Wall clock time and date at job start Tue Mar 31 2020 13:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47066 * 2 1 4 4 H 1.09003 * 109.47674 * 180.42234 * 3 2 1 5 5 C 1.50703 * 109.47281 * 60.42632 * 3 2 1 6 6 H 1.08009 * 119.99855 * 239.99946 * 5 3 2 7 7 C 1.37873 * 120.00402 * 60.27572 * 5 3 2 8 8 N 1.31514 * 119.99282 * 359.72365 * 7 5 3 9 9 Si 1.86794 * 120.00221 * 179.72627 * 7 5 3 10 10 H 1.48490 * 109.47287 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46804 * 119.99991 * 9 7 5 12 12 H 1.48499 * 109.47102 * 239.99879 * 9 7 5 13 13 N 1.46905 * 109.47206 * 300.42683 * 3 2 1 14 14 C 1.47097 * 110.99385 * 301.22550 * 13 3 2 15 15 C 1.54033 * 106.85554 * 219.08281 * 14 13 3 16 16 H 1.09001 * 112.98882 * 264.45006 * 15 14 13 17 17 C 1.51340 * 108.93955 * 137.24315 * 15 14 13 18 18 O 1.21307 * 124.88688 * 87.16013 * 17 15 14 19 19 N 1.34376 * 110.23187 * 267.15569 * 17 15 14 20 20 C 1.40715 * 124.34424 * 180.02562 * 19 17 15 21 21 C 1.38803 * 122.62248 * 359.71160 * 20 19 17 22 22 C 1.33360 * 114.89457 * 179.79998 * 21 20 19 23 23 S 1.75857 * 109.70883 * 0.44644 * 22 21 20 24 24 C 1.33817 * 122.62565 * 179.97438 * 20 19 17 25 25 C 1.46764 * 111.31640 * 0.02562 * 19 17 15 26 26 C 1.54266 * 105.51229 * 342.73710 * 25 19 17 27 27 H 1.08999 * 113.73517 * 263.89688 * 26 25 19 28 28 C 1.47025 * 111.00202 * 179.55198 * 13 3 2 29 29 H 1.09003 * 109.46907 * 296.35583 * 1 2 3 30 30 H 1.08992 * 109.47140 * 56.35444 * 1 2 3 31 31 H 1.09001 * 109.46911 * 176.35964 * 1 2 3 32 32 H 1.08995 * 109.47019 * 239.99959 * 2 1 3 33 33 H 1.09001 * 109.47446 * 119.99398 * 2 1 3 34 34 H 0.97007 * 119.99956 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.98771 * 338.43882 * 14 13 3 36 36 H 1.09007 * 109.98157 * 99.73864 * 14 13 3 37 37 H 1.08000 * 122.55158 * 0.02562 * 21 20 19 38 38 H 1.08002 * 125.14928 * 180.18608 * 22 21 20 39 39 H 1.08001 * 125.19802 * 0.02749 * 24 20 19 40 40 H 1.09006 * 110.23487 * 223.73046 * 25 19 17 41 41 H 1.08993 * 110.24237 * 101.75302 * 25 19 17 42 42 H 1.09005 * 109.74976 * 243.65302 * 28 13 3 43 43 H 1.09006 * 109.75058 * 4.32363 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 -0.0076 5 6 1.5463 2.1499 1.2357 6 1 0.9247 3.0283 1.1431 7 6 1.8928 1.6792 2.4844 8 7 2.6497 0.6096 2.5971 9 14 1.2872 2.5605 4.0160 10 1 0.4578 3.7270 3.6205 11 1 0.4706 1.6276 4.8335 12 1 2.4511 3.0269 4.8115 13 7 1.5419 2.1380 -1.1943 14 6 1.9809 1.4572 -2.4221 15 6 2.3355 2.5572 -3.4403 16 1 1.5156 2.7879 -4.1206 17 6 3.6190 2.1775 -4.1466 18 8 3.6853 1.4858 -5.1409 19 7 4.6747 2.7169 -3.5139 20 6 6.0120 2.5534 -3.9199 21 6 6.3705 1.8006 -5.0296 22 6 7.6802 1.7526 -5.2762 23 16 8.5469 2.6832 -4.0615 24 6 7.0381 3.1074 -3.2635 25 6 4.2539 3.4984 -2.3451 26 6 2.7471 3.7616 -2.5454 27 1 2.5269 4.7293 -2.9961 28 6 2.0043 3.5333 -1.2227 29 1 -0.3633 0.4562 0.9209 30 1 -0.3633 0.5693 -0.8554 31 1 -0.3633 -1.0256 -0.0653 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.8938 0.2785 3.4756 35 1 2.8582 0.8444 -2.2150 36 1 1.1750 0.8350 -2.8115 37 1 5.6437 1.2952 -5.6483 38 1 8.1396 1.2193 -6.0953 39 1 6.9528 3.7204 -2.3784 40 1 4.7994 4.4414 -2.3058 41 1 4.4189 2.9283 -1.4310 42 1 1.1490 4.2062 -1.1594 43 1 2.6784 3.7151 -0.3856 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255169794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:08 Heat of formation + Delta-G solvation = 4.397189 kcal Electronic energy + Delta-G solvation = -25599.977845 eV Core-core repulsion = 22157.431188 eV Total energy + Delta-G solvation = -3442.546657 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.61843 -39.83907 -38.59762 -37.22471 -35.26461 -33.39300 -31.67285 -30.94860 -30.03415 -28.12587 -27.23012 -25.31973 -24.89887 -23.07710 -22.00299 -21.54213 -20.70497 -19.82391 -18.85279 -18.09795 -17.64213 -17.55227 -16.86520 -16.36904 -16.08327 -15.90372 -15.30990 -15.08272 -14.79126 -14.62024 -14.45236 -14.08504 -14.06790 -13.81619 -13.68763 -13.59129 -13.39302 -12.99172 -12.82268 -12.76042 -12.42611 -12.28946 -12.16454 -12.02380 -11.89265 -11.75564 -11.52432 -11.26403 -11.10390 -10.90218 -10.80914 -10.46360 -9.77160 -8.90851 -8.82302 -8.05621 -6.15295 -0.10231 0.60135 0.87924 1.06201 1.43504 1.47821 1.57330 1.87126 1.93332 2.45854 2.95645 3.18646 3.24086 3.57326 3.63934 3.72376 3.91855 4.10429 4.23508 4.31065 4.38890 4.44764 4.48572 4.59565 4.72324 4.75227 4.78894 4.82079 4.85272 4.89482 4.97965 5.07413 5.10597 5.23671 5.29660 5.43086 5.48711 5.60478 5.74744 5.77988 5.86465 5.92546 6.30372 6.42220 6.67221 6.85531 6.98281 7.53065 9.00255 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016145 B = 0.003830 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.886864 B = 7309.664151 C = 8055.704514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.111 4.111 3 C 0.225 3.775 4 H -0.040 1.040 5 C -0.497 4.497 6 H 0.064 0.936 7 C 0.015 3.985 8 N -0.922 5.922 9 Si 0.950 3.050 10 H -0.262 1.262 11 H -0.288 1.288 12 H -0.286 1.286 13 N -0.519 5.519 14 C 0.070 3.930 15 C -0.116 4.116 16 H 0.146 0.854 17 C 0.521 3.479 18 O -0.547 6.547 19 N -0.549 5.549 20 C 0.129 3.871 21 C -0.179 4.179 22 C -0.188 4.188 23 S 0.162 5.838 24 C -0.276 4.276 25 C 0.103 3.897 26 C -0.098 4.098 27 H 0.147 0.853 28 C 0.063 3.937 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.016 0.984 33 H 0.060 0.940 34 H 0.258 0.742 35 H 0.013 0.987 36 H 0.083 0.917 37 H 0.145 0.855 38 H 0.196 0.804 39 H 0.178 0.822 40 H 0.114 0.886 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.250 7.995 -12.840 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.149 4.149 3 C 0.118 3.882 4 H -0.023 1.023 5 C -0.535 4.535 6 H 0.082 0.918 7 C -0.183 4.183 8 N -0.562 5.562 9 Si 0.777 3.223 10 H -0.186 1.186 11 H -0.214 1.214 12 H -0.212 1.212 13 N -0.243 5.243 14 C -0.058 4.058 15 C -0.138 4.138 16 H 0.164 0.836 17 C 0.311 3.689 18 O -0.425 6.425 19 N -0.273 5.273 20 C 0.024 3.976 21 C -0.211 4.211 22 C -0.324 4.324 23 S 0.423 5.577 24 C -0.415 4.415 25 C -0.019 4.019 26 C -0.118 4.118 27 H 0.165 0.835 28 C -0.065 4.065 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.101 0.899 37 H 0.163 0.837 38 H 0.213 0.787 39 H 0.195 0.805 40 H 0.133 0.867 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.363 7.831 -12.909 17.260 hybrid contribution -0.685 -0.599 0.980 1.338 sum 7.678 7.233 -11.929 15.923 Atomic orbital electron populations 1.21317 0.95416 0.98546 1.01223 1.21469 0.96784 0.97977 0.98708 1.19212 0.90163 0.91442 0.87399 1.02289 1.21270 1.30328 1.11787 0.90158 0.91831 1.25595 0.95432 0.95661 1.01661 1.70037 1.38075 1.24242 1.23878 0.85612 0.77945 0.78865 0.79875 1.18610 1.21433 1.21194 1.63229 1.58000 1.01972 1.01108 1.22454 0.98195 0.95379 0.89822 1.23001 0.95544 0.96996 0.98230 0.83579 1.21317 0.87006 0.78019 0.82590 1.90600 1.86965 1.38768 1.26175 1.45859 1.03558 1.49554 1.28320 1.17072 0.83575 1.00394 0.96521 1.20349 0.97718 1.03682 0.99319 1.25902 0.96037 1.05529 1.04889 1.83917 1.06120 1.47252 1.20393 1.25297 0.95381 1.12499 1.08330 1.22529 0.96464 0.96679 0.86183 1.23280 0.92317 0.99913 0.96256 0.83544 1.22497 0.98693 0.90587 0.94770 0.94439 0.92383 0.94840 0.96534 0.92198 0.93297 0.96852 0.89921 0.83747 0.78677 0.80462 0.86741 0.92261 0.89352 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.57 9.49 71.98 0.68 -3.89 16 2 C -0.11 -5.27 5.21 30.59 0.16 -5.11 16 3 C 0.22 10.62 1.31 44.17 0.06 10.67 16 4 H -0.04 -2.18 8.11 -2.39 -0.02 -2.20 16 5 C -0.50 -25.00 6.50 25.60 0.17 -24.84 16 6 H 0.06 3.15 7.41 -2.91 -0.02 3.13 16 7 C 0.01 0.78 5.31 84.65 0.45 1.23 16 8 N -0.92 -51.48 11.32 21.45 0.24 -51.24 16 9 Si 0.95 41.72 29.54 68.60 2.03 43.75 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 13 N -0.52 -19.68 4.13 -871.53 -3.60 -23.28 16 14 C 0.07 2.44 4.93 86.61 0.43 2.87 16 15 C -0.12 -3.20 4.12 -10.09 -0.04 -3.25 16 16 H 0.15 3.38 8.14 -2.39 -0.02 3.37 16 17 C 0.52 16.80 6.93 87.92 0.61 17.41 16 18 O -0.55 -20.43 15.13 -3.11 -0.05 -20.48 16 19 N -0.55 -16.24 3.16 -631.82 -2.00 -18.24 16 20 C 0.13 3.69 6.53 36.84 0.24 3.93 16 21 C -0.18 -5.01 9.37 21.30 0.20 -4.81 16 22 C -0.19 -3.93 11.22 66.72 0.75 -3.18 16 23 S 0.16 3.07 23.33 -56.49 -1.32 1.76 16 24 C -0.28 -6.57 10.50 66.81 0.70 -5.87 16 25 C 0.10 2.65 5.84 86.76 0.51 3.16 16 26 C -0.10 -2.34 4.21 -9.33 -0.04 -2.38 16 27 H 0.15 2.41 8.14 -2.39 -0.02 2.39 16 28 C 0.06 1.95 5.40 86.42 0.47 2.41 16 29 H 0.04 1.71 7.36 -2.39 -0.02 1.69 16 30 H 0.06 2.30 7.48 -2.39 -0.02 2.28 16 31 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.02 0.73 6.87 -2.39 -0.02 0.72 16 33 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 34 H 0.26 13.87 8.31 -92.70 -0.77 13.10 16 35 H 0.01 0.53 6.75 -2.39 -0.02 0.52 16 36 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 37 H 0.15 4.61 5.80 -2.91 -0.02 4.59 16 38 H 0.20 2.83 8.06 -2.91 -0.02 2.80 16 39 H 0.18 3.66 7.49 -2.91 -0.02 3.63 16 40 H 0.11 2.22 7.74 -2.38 -0.02 2.21 16 41 H 0.06 1.89 7.56 -2.39 -0.02 1.87 16 42 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 43 H 0.05 1.93 6.51 -2.38 -0.02 1.91 16 Total: -1.00 -63.33 347.06 1.66 -61.68 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.02 Total: 17.69 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 5.33 Total: -11.64 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -5.36 Total: -92.76 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.05 Total: -20.48 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.32 Total: 1.76 kcal Total: -63.33 1.66 -61.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.075 kcal (2) G-P(sol) polarization free energy of solvation -63.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds