Wall clock time and date at job start Tue Mar 31 2020 12:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.49413 * 2 1 4 4 C 1.53096 * 109.48163 * 120.03371 * 2 1 3 5 5 C 1.53178 * 109.21543 * 177.62115 * 4 2 1 6 6 H 1.09002 * 109.54411 * 62.85301 * 5 4 2 7 7 C 1.50702 * 109.54480 * 183.11957 * 5 4 2 8 8 O 1.20825 * 119.99716 * 359.97438 * 7 5 4 9 9 O 1.34261 * 120.00162 * 179.97438 * 7 5 4 10 10 C 1.35927 * 116.99863 * 175.01127 * 9 7 5 11 11 C 1.38829 * 120.01748 * 255.28695 * 10 9 7 12 12 C 1.38187 * 120.07379 * 180.02562 * 11 10 9 13 13 C 1.38146 * 120.13103 * 359.95447 * 12 11 10 14 14 C 1.38896 * 120.03890 * 0.02562 * 13 12 11 15 15 O 1.35754 * 120.04174 * 180.02562 * 14 13 12 16 16 C 1.34834 * 116.99743 * 185.61241 * 15 14 13 17 17 H 1.07994 * 120.00174 * 354.95014 * 16 15 14 18 18 C 1.38657 * 119.99620 * 174.95226 * 16 15 14 19 19 N 1.31552 * 120.00079 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99765 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47078 * 90.00596 * 20 18 16 22 22 H 1.48498 * 109.47478 * 210.00280 * 20 18 16 23 23 H 1.48498 * 109.47437 * 330.00471 * 20 18 16 24 24 C 1.38564 * 120.02007 * 75.01290 * 10 9 7 25 25 C 1.53180 * 109.03457 * 302.98425 * 5 4 2 26 26 C 1.53093 * 109.16285 * 56.98484 * 25 5 4 27 27 O 1.42906 * 109.41408 * 302.38559 * 26 25 5 28 28 H 1.09002 * 109.46602 * 299.97294 * 1 2 3 29 29 H 1.08994 * 109.47127 * 59.96691 * 1 2 3 30 30 H 1.08993 * 109.47221 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47567 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47396 * 300.02936 * 3 2 1 33 33 H 1.09003 * 109.47317 * 60.02878 * 3 2 1 34 34 H 1.08994 * 109.52464 * 57.67884 * 4 2 1 35 35 H 1.09002 * 109.51741 * 297.55718 * 4 2 1 36 36 H 1.07996 * 119.96306 * 359.97438 * 11 10 9 37 37 H 1.08004 * 119.93401 * 179.97438 * 12 11 10 38 38 H 1.08002 * 119.98204 * 180.02562 * 13 12 11 39 39 H 0.97001 * 120.00077 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.06376 * 359.97438 * 24 10 9 41 41 H 1.09008 * 109.52104 * 176.88691 * 25 5 4 42 42 H 1.08998 * 109.52322 * 297.00884 * 25 5 4 43 43 H 1.08993 * 109.48138 * 62.37509 * 26 25 5 44 44 H 1.08997 * 109.47642 * 182.40916 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0405 1.4422 0.0000 4 6 2.0405 -0.7224 1.2495 5 6 3.5711 -0.7710 1.2137 6 1 3.9690 0.2434 1.2424 7 6 4.0788 -1.5473 2.4014 8 8 3.2980 -2.0142 3.1965 9 8 5.3988 -1.7201 2.5760 10 6 5.7941 -2.3387 3.7200 11 6 6.3518 -1.5977 4.7531 12 6 6.7546 -2.2254 5.9164 13 6 6.6029 -3.5915 6.0556 14 6 6.0451 -4.3376 5.0254 15 8 5.8955 -5.6799 5.1623 16 6 5.4566 -6.3600 4.0840 17 1 5.1637 -5.8268 3.1917 18 6 5.3811 -7.7441 4.1208 19 7 5.7374 -8.3935 5.2080 20 14 4.7723 -8.6862 2.6272 21 1 5.9229 -9.0203 1.7499 22 1 4.1069 -9.9381 3.0690 23 1 3.8031 -7.8494 1.8752 24 6 5.6355 -3.7083 3.8580 25 6 4.0189 -1.4607 -0.0787 26 6 3.4333 -0.7104 -1.2777 27 8 2.0090 -0.6752 -1.1666 28 1 -0.3632 0.5134 0.8903 29 1 -0.3633 0.5143 -0.8896 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1306 1.4419 -0.0005 32 1 1.6770 1.9564 -0.8897 33 1 1.6778 1.9561 0.8902 34 1 1.6442 -1.7375 1.2709 35 1 1.7139 -0.1850 2.1399 36 1 6.4718 -0.5297 4.6472 37 1 7.1886 -1.6469 6.7185 38 1 6.9182 -4.0795 6.9660 39 1 5.6843 -9.3617 5.2338 40 1 5.1973 -4.2856 3.0573 41 1 5.1073 -1.4505 -0.1388 42 1 3.6636 -2.4912 -0.0836 43 1 3.8219 0.3078 -1.2945 44 1 3.7134 -1.2217 -2.1986 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262800878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:48 Heat of formation + Delta-G solvation = -131.796541 kcal Electronic energy + Delta-G solvation = -27243.650547 eV Core-core repulsion = 23320.152465 eV Total energy + Delta-G solvation = -3923.498082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.23494 -40.03432 -38.76281 -37.10202 -35.74653 -34.04767 -33.84073 -32.32572 -29.79579 -28.96211 -28.61844 -27.63478 -25.79160 -25.27158 -23.20950 -22.29668 -21.62675 -20.39041 -19.46006 -18.32027 -17.89047 -17.23674 -16.42583 -16.33257 -16.09869 -15.42280 -15.16136 -14.98438 -14.62333 -14.44138 -14.32026 -13.87363 -13.65597 -13.48435 -13.28170 -13.02853 -12.78057 -12.56924 -12.40795 -12.18425 -12.01466 -11.91021 -11.66846 -11.48886 -11.38282 -11.35899 -11.08745 -11.04383 -10.85795 -10.52461 -10.50069 -10.32274 -10.29056 -9.72814 -9.53512 -8.89387 -8.19340 -7.38054 -6.50206 -4.09613 1.73368 2.18421 2.29226 2.99947 3.11922 3.12245 3.17055 3.48482 3.93274 4.25523 4.39680 4.43803 4.51000 4.60695 4.68538 4.87253 4.99256 5.02207 5.06794 5.12157 5.21713 5.27823 5.38671 5.40740 5.46990 5.51952 5.56834 5.62950 5.73139 5.75505 5.78619 5.86567 5.95434 5.97927 6.06771 6.13439 6.29820 6.53061 6.87048 6.97036 7.00612 7.06275 7.10887 7.30696 7.56532 7.93342 8.12521 8.94886 9.60755 10.67258 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012635 B = 0.003670 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.488870 B = 7626.749970 C = 9151.391376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.113 3.887 3 C -0.182 4.182 4 C -0.129 4.129 5 C -0.077 4.077 6 H 0.110 0.890 7 C 0.457 3.543 8 O -0.480 6.480 9 O -0.295 6.295 10 C 0.119 3.881 11 C -0.213 4.213 12 C -0.065 4.065 13 C -0.187 4.187 14 C 0.164 3.836 15 O -0.170 6.170 16 C -0.393 4.393 17 H 0.091 0.909 18 C 0.042 3.958 19 N -0.859 5.859 20 Si 0.940 3.060 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.267 1.267 24 C -0.229 4.229 25 C -0.151 4.151 26 C 0.062 3.938 27 O -0.373 6.373 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.271 0.729 40 H 0.131 0.869 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.038 18.351 -11.162 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.074 3.926 3 C -0.240 4.240 4 C -0.167 4.167 5 C -0.096 4.096 6 H 0.128 0.872 7 C 0.299 3.701 8 O -0.364 6.364 9 O -0.211 6.211 10 C 0.079 3.921 11 C -0.232 4.232 12 C -0.083 4.083 13 C -0.206 4.206 14 C 0.109 3.891 15 O -0.073 6.073 16 C -0.469 4.469 17 H 0.108 0.892 18 C -0.163 4.163 19 N -0.494 5.494 20 Si 0.765 3.235 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.249 4.249 25 C -0.189 4.189 26 C -0.014 4.014 27 O -0.292 6.292 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.081 0.919 40 H 0.149 0.851 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.372 17.673 -10.762 21.378 hybrid contribution -0.002 -0.457 -0.443 0.637 sum -5.373 17.216 -11.206 21.233 Atomic orbital electron populations 1.21742 0.91928 1.03246 1.02543 1.21516 0.95164 0.91011 0.84927 1.22496 1.01994 0.96383 1.03084 1.22156 0.92316 1.03481 0.98711 1.21123 0.97143 0.99927 0.91436 0.87205 1.23900 0.80779 0.78541 0.86883 1.90726 1.56295 1.44799 1.44577 1.84504 1.25754 1.71122 1.39688 1.18232 0.98733 0.90386 0.84773 1.20491 1.10110 0.98964 0.93664 1.20482 0.98180 0.93520 0.96130 1.20335 1.07081 0.93466 0.99756 1.19123 0.92108 0.85547 0.92278 1.83998 1.72995 1.12832 1.37446 1.21319 1.44128 0.89112 0.92385 0.89196 1.25285 0.96759 0.95537 0.98680 1.70031 1.43763 1.08771 1.26797 0.85717 0.79031 0.79036 0.79750 1.19701 1.20057 1.19135 1.21198 1.09487 0.93538 1.00700 1.22245 1.02646 1.01061 0.92940 1.22585 0.81207 0.99677 0.97980 1.88013 1.20820 1.77352 1.43011 0.90915 0.91662 0.91517 0.91819 0.91547 0.91199 0.89638 0.89840 0.86811 0.85977 0.85846 0.91869 0.85111 0.89104 0.90061 0.92487 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.85 37.15 0.33 -0.80 16 2 C 0.11 1.05 1.11 -90.58 -0.10 0.95 16 3 C -0.18 -1.34 7.94 37.15 0.29 -1.04 16 4 C -0.13 -1.44 3.51 -26.59 -0.09 -1.54 16 5 C -0.08 -0.90 2.41 -91.59 -0.22 -1.12 16 6 H 0.11 1.02 6.62 -51.93 -0.34 0.68 16 7 C 0.46 7.59 7.12 36.01 0.26 7.85 16 8 O -0.48 -9.73 15.39 -18.75 -0.29 -10.02 16 9 O -0.30 -5.29 9.96 -23.62 -0.24 -5.52 16 10 C 0.12 2.45 5.19 -39.24 -0.20 2.25 16 11 C -0.21 -3.93 9.99 -39.38 -0.39 -4.32 16 12 C -0.06 -1.17 10.03 -39.63 -0.40 -1.57 16 13 C -0.19 -3.99 9.99 -39.37 -0.39 -4.38 16 14 C 0.16 4.09 6.64 -39.13 -0.26 3.83 16 15 O -0.17 -4.93 9.76 0.02 0.00 -4.93 16 16 C -0.39 -11.27 9.49 30.89 0.29 -10.98 16 17 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 18 C 0.04 1.18 5.49 -17.52 -0.10 1.08 16 19 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 20 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 C -0.23 -5.40 8.56 -39.25 -0.34 -5.74 16 25 C -0.15 -1.59 5.36 -26.59 -0.14 -1.73 16 26 C 0.06 0.54 6.52 37.21 0.24 0.78 16 27 O -0.37 -3.98 10.24 -35.23 -0.36 -4.34 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.44 4.98 -51.92 -0.26 0.18 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 1.13 8.02 -51.93 -0.42 0.71 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16 38 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 40 H 0.13 3.18 5.64 -52.48 -0.30 2.89 16 41 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.41 6.34 -51.93 -0.33 0.08 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -33.27 360.67 -7.06 -40.33 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.13 Total: 4.17 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -1.22 Total: -16.45 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.76 Total: -24.55 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.88 Total: -24.81 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.27 -7.06 -40.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262800878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.467 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds