Wall clock time and date at job start Tue Mar 31 2020 12:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47155 * 2 1 4 4 C 1.53002 * 109.47098 * 240.00191 * 2 1 3 5 5 C 1.53002 * 109.47085 * 119.99853 * 2 1 3 6 6 N 1.46903 * 109.46885 * 89.83385 * 5 2 1 7 7 C 1.46897 * 111.00142 * 75.22845 * 6 5 2 8 8 C 1.50699 * 109.47440 * 83.29468 * 7 6 5 9 9 H 1.07996 * 119.99925 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00109 * 180.02562 * 8 7 6 11 11 N 1.31522 * 119.99969 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00145 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47166 * 59.99555 * 12 10 8 14 14 H 1.48500 * 109.47545 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47026 * 299.99654 * 12 10 8 16 16 C 1.46896 * 110.99971 * 311.26958 * 6 5 2 17 17 C 1.50701 * 109.47383 * 278.12918 * 16 6 5 18 18 C 1.38362 * 119.91844 * 257.38909 * 17 16 6 19 19 C 1.38448 * 120.29242 * 179.72085 * 18 17 16 20 20 Cl 1.73603 * 119.93898 * 180.29774 * 19 18 17 21 21 C 1.38096 * 120.12536 * 0.55154 * 19 18 17 22 22 C 1.39596 * 119.82875 * 359.72511 * 21 19 18 23 23 C 1.43195 * 120.14199 * 180.02562 * 22 21 19 24 24 N 6.12214 * 40.19402 * 96.06957 * 2 1 3 25 25 C 1.37931 * 119.91775 * 77.65922 * 17 16 6 26 26 H 1.09001 * 109.46962 * 292.93321 * 1 2 3 27 27 H 1.08998 * 109.46833 * 52.93667 * 1 2 3 28 28 H 1.08996 * 109.47070 * 172.93522 * 1 2 3 29 29 H 1.08999 * 109.47141 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46722 * 300.00268 * 3 2 1 31 31 H 1.09005 * 109.46994 * 59.99766 * 3 2 1 32 32 H 1.09005 * 109.46603 * 277.26581 * 4 2 1 33 33 H 1.08997 * 109.47437 * 37.26854 * 4 2 1 34 34 H 1.09006 * 109.47015 * 157.26978 * 4 2 1 35 35 H 1.08996 * 109.47298 * 329.83230 * 5 2 1 36 36 H 1.08999 * 109.46814 * 209.83028 * 5 2 1 37 37 H 1.09005 * 109.46722 * 203.29885 * 7 6 5 38 38 H 1.09001 * 109.46843 * 323.29114 * 7 6 5 39 39 H 0.96998 * 119.99690 * 180.02562 * 11 10 8 40 40 H 1.09003 * 109.47495 * 158.12782 * 16 6 5 41 41 H 1.08999 * 109.47255 * 38.12751 * 16 6 5 42 42 H 1.08002 * 119.85145 * 359.97438 * 18 17 16 43 43 H 1.07998 * 120.08411 * 179.74816 * 21 19 18 44 44 H 1.08008 * 120.06039 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2493 6 7 2.1994 -2.1522 0.9577 7 6 3.3966 -2.3929 0.1412 8 6 4.6079 -2.4659 1.0348 9 1 4.4993 -2.3451 2.1024 10 6 5.8548 -2.6859 0.4891 11 7 5.9871 -2.8325 -0.8112 12 14 7.3561 -2.7770 1.5968 13 1 7.1883 -3.8880 2.5676 14 1 8.5664 -3.0203 0.7713 15 1 7.5073 -1.4957 2.3321 16 6 0.9996 -2.6934 0.3055 17 6 -0.0385 -3.0141 1.3497 18 6 -0.2428 -4.3258 1.7397 19 6 -1.1905 -4.6285 2.7025 20 17 -1.4338 -6.2767 3.1906 21 6 -1.9462 -3.6226 3.2716 22 6 -1.7484 -2.2980 2.8778 23 6 -2.5280 -1.2495 3.4640 24 7 -3.1465 -0.4178 3.9289 25 6 -0.7866 -1.9998 1.9102 26 1 -0.3633 0.4004 0.9465 27 1 -0.3633 0.6194 -0.8200 28 1 -0.3633 -1.0198 -0.1264 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 2.0385 -1.7970 -1.0737 33 1 1.3901 -0.4899 -2.0932 34 1 3.0548 -0.3906 -1.4709 35 1 1.3235 -0.5933 2.0606 36 1 3.0016 -0.3012 1.5441 37 1 3.2854 -3.3338 -0.3979 38 1 3.5197 -1.5779 -0.5721 39 1 6.8643 -2.9876 -1.1950 40 1 1.2601 -3.6012 -0.2387 41 1 0.5997 -1.9552 -0.3897 42 1 0.3425 -5.1165 1.2940 43 1 -2.6881 -3.8600 4.0197 44 1 -0.6285 -0.9769 1.6017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307486673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:52 Heat of formation + Delta-G solvation = 107.530765 kcal Electronic energy + Delta-G solvation = -25243.036865 eV Core-core repulsion = 21802.918710 eV Total energy + Delta-G solvation = -3440.118156 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.60898 -38.94305 -36.84950 -36.29529 -34.17343 -32.83999 -31.59225 -31.26506 -27.93710 -27.71985 -26.88202 -26.07217 -24.16553 -23.71894 -21.85789 -20.51909 -18.90269 -18.21430 -16.53424 -16.45287 -16.18543 -15.41097 -15.25015 -14.79012 -14.35511 -14.23161 -14.12459 -13.86921 -13.39765 -13.25238 -13.14790 -13.01926 -12.92210 -12.38101 -12.30356 -11.75180 -11.68603 -11.46080 -11.39011 -11.30187 -11.15460 -11.06475 -11.00547 -10.87308 -10.75616 -10.53182 -10.47961 -10.04056 -9.82846 -9.80930 -9.20276 -8.94570 -8.81533 -8.38213 -7.17408 -6.01775 -4.01778 0.60883 1.04893 1.93372 2.54950 2.77632 3.33176 3.37626 3.40935 3.65099 3.72614 4.42339 4.60794 4.82868 4.92824 4.99760 5.06546 5.08439 5.15623 5.23787 5.31964 5.33285 5.56172 5.60333 5.69698 5.81880 5.84208 5.91666 5.92024 6.02079 6.04413 6.06636 6.18069 6.24322 6.34452 6.42918 6.52771 6.55861 6.59493 6.72100 6.79451 7.13829 7.31530 7.36876 7.81101 8.05229 8.14226 8.51415 9.04790 9.61350 11.07385 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.010698 B = 0.004445 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.650550 B = 6297.923304 C = 7942.791523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.103 4.103 3 C -0.135 4.135 4 C -0.169 4.169 5 C 0.066 3.934 6 N -0.523 5.523 7 C 0.161 3.839 8 C -0.501 4.501 9 H 0.060 0.940 10 C 0.056 3.944 11 N -0.901 5.901 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.278 1.278 16 C 0.049 3.951 17 C -0.041 4.041 18 C -0.065 4.065 19 C -0.036 4.036 20 Cl -0.066 7.066 21 C -0.075 4.075 22 C -0.023 4.023 23 C 0.261 3.739 24 N -0.420 5.420 25 C -0.086 4.086 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.024 0.976 38 H 0.040 0.960 39 H 0.260 0.740 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.488 -0.222 1.575 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.104 4.104 3 C -0.193 4.193 4 C -0.225 4.225 5 C -0.063 4.063 6 N -0.245 5.245 7 C 0.038 3.962 8 C -0.540 4.540 9 H 0.078 0.922 10 C -0.145 4.145 11 N -0.541 5.541 12 Si 0.722 3.278 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.204 1.204 16 C -0.078 4.078 17 C -0.042 4.042 18 C -0.085 4.085 19 C -0.063 4.063 20 Cl -0.037 7.037 21 C -0.097 4.097 22 C -0.026 4.026 23 C -0.054 4.054 24 N -0.095 5.095 25 C -0.107 4.107 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.160 0.840 43 H 0.155 0.845 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.236 0.621 2.647 15.477 hybrid contribution 1.083 -0.196 -0.184 1.116 sum -14.153 0.425 2.463 14.372 Atomic orbital electron populations 1.22803 0.96039 1.02365 1.00986 1.21213 0.94604 0.96492 0.98127 1.21857 1.01521 0.95228 1.00718 1.22946 1.00894 1.03086 0.95607 1.22351 1.01456 0.88057 0.94432 1.62244 1.01823 1.13163 1.47289 1.20638 0.85280 0.97468 0.92857 1.21179 0.90808 1.47879 0.94096 0.92166 1.24925 0.98855 0.95772 0.94952 1.69927 1.23792 1.50164 1.10235 0.86633 0.82123 0.78581 0.80490 1.20297 1.21503 1.20403 1.22002 0.90939 1.01670 0.93187 1.19978 0.95334 0.91468 0.97411 1.21303 0.95057 0.97547 0.94604 1.20640 1.00008 0.85783 0.99861 1.98380 1.96242 1.18198 1.90909 1.20886 0.99214 0.90048 0.99506 1.15779 0.98256 0.88633 0.99974 1.25595 0.93233 0.93130 0.93451 1.81245 1.09654 1.09712 1.08873 1.22144 0.92631 1.02231 0.93666 0.92527 0.92812 0.90430 0.92107 0.93382 0.93195 0.89034 0.94343 0.91274 0.92389 0.89884 0.95768 0.94276 0.92994 0.90131 0.89710 0.84048 0.84472 0.82513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 6.39 37.16 0.24 -1.66 16 2 C -0.10 -1.43 0.77 -154.50 -0.12 -1.55 16 3 C -0.14 -1.80 8.19 37.16 0.30 -1.49 16 4 C -0.17 -2.64 6.20 37.16 0.23 -2.41 16 5 C 0.07 1.08 4.85 -3.82 -0.02 1.06 16 6 N -0.52 -9.50 4.46 -237.52 -1.06 -10.56 16 7 C 0.16 3.64 3.41 -4.98 -0.02 3.63 16 8 C -0.50 -13.09 8.94 -34.44 -0.31 -13.40 16 9 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.06 1.49 5.46 -17.82 -0.10 1.40 16 11 N -0.90 -25.21 13.29 55.43 0.74 -24.48 16 12 Si 0.89 21.01 29.54 -169.99 -5.02 15.98 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.05 0.71 3.71 -4.98 -0.02 0.69 16 17 C -0.04 -0.52 5.30 -104.69 -0.56 -1.07 16 18 C -0.07 -0.79 9.44 -39.46 -0.37 -1.16 16 19 C -0.04 -0.40 6.31 -39.56 -0.25 -0.65 16 20 Cl -0.07 -0.70 28.95 -51.86 -1.50 -2.20 16 21 C -0.08 -0.78 9.54 -39.13 -0.37 -1.15 16 22 C -0.02 -0.25 5.73 -106.94 -0.61 -0.87 16 23 C 0.26 3.18 15.33 -22.47 -0.34 2.83 16 24 N -0.42 -5.86 18.54 41.84 0.78 -5.09 16 25 C -0.09 -1.01 7.38 -39.17 -0.29 -1.30 16 26 H 0.06 0.61 6.40 -51.93 -0.33 0.28 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.86 3.60 -51.93 -0.19 0.67 16 29 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.54 2.69 -51.93 -0.14 1.40 16 33 H 0.04 0.52 7.94 -51.93 -0.41 0.11 16 34 H 0.07 1.25 6.75 -51.93 -0.35 0.90 16 35 H 0.06 0.87 6.09 -51.93 -0.32 0.55 16 36 H 0.08 1.56 7.36 -51.93 -0.38 1.18 16 37 H 0.02 0.59 7.38 -51.93 -0.38 0.21 16 38 H 0.04 0.91 3.84 -51.93 -0.20 0.71 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.08 1.20 7.21 -51.93 -0.37 0.82 16 41 H 0.09 1.13 2.35 -51.93 -0.12 1.01 16 42 H 0.14 1.65 8.01 -52.49 -0.42 1.23 16 43 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.16 1.77 2.65 -52.48 -0.14 1.63 16 LS Contribution 352.02 15.07 5.30 5.30 Total: -1.00 -27.64 352.02 -8.78 -36.42 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.42 Total: 1.71 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -2.60 Total: -17.10 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.45 Total: -40.12 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.64 -8.78 -36.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307486673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.955 kcal (2) G-P(sol) polarization free energy of solvation -27.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds