Wall clock time and date at job start Tue Mar 31 2020 12:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47155 * 2 1 4 4 C 1.53002 * 109.47098 * 240.00191 * 2 1 3 5 5 C 1.53002 * 109.47085 * 119.99853 * 2 1 3 6 6 N 1.46903 * 109.46885 * 89.83385 * 5 2 1 7 7 C 1.46897 * 111.00142 * 75.22845 * 6 5 2 8 8 C 1.50699 * 109.47440 * 83.29468 * 7 6 5 9 9 H 1.07996 * 119.99925 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00109 * 180.02562 * 8 7 6 11 11 N 1.31522 * 119.99969 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00145 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47166 * 59.99555 * 12 10 8 14 14 H 1.48500 * 109.47545 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47026 * 299.99654 * 12 10 8 16 16 C 1.46896 * 110.99971 * 311.26958 * 6 5 2 17 17 C 1.50701 * 109.47383 * 278.12918 * 16 6 5 18 18 C 1.38362 * 119.91844 * 257.38909 * 17 16 6 19 19 C 1.38448 * 120.29242 * 179.72085 * 18 17 16 20 20 Cl 1.73603 * 119.93898 * 180.29774 * 19 18 17 21 21 C 1.38096 * 120.12536 * 0.55154 * 19 18 17 22 22 C 1.39596 * 119.82875 * 359.72511 * 21 19 18 23 23 C 1.43195 * 120.14199 * 180.02562 * 22 21 19 24 24 N 6.12214 * 40.19402 * 96.06957 * 2 1 3 25 25 C 1.37931 * 119.91775 * 77.65922 * 17 16 6 26 26 H 1.09001 * 109.46962 * 292.93321 * 1 2 3 27 27 H 1.08998 * 109.46833 * 52.93667 * 1 2 3 28 28 H 1.08996 * 109.47070 * 172.93522 * 1 2 3 29 29 H 1.08999 * 109.47141 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46722 * 300.00268 * 3 2 1 31 31 H 1.09005 * 109.46994 * 59.99766 * 3 2 1 32 32 H 1.09005 * 109.46603 * 277.26581 * 4 2 1 33 33 H 1.08997 * 109.47437 * 37.26854 * 4 2 1 34 34 H 1.09006 * 109.47015 * 157.26978 * 4 2 1 35 35 H 1.08996 * 109.47298 * 329.83230 * 5 2 1 36 36 H 1.08999 * 109.46814 * 209.83028 * 5 2 1 37 37 H 1.09005 * 109.46722 * 203.29885 * 7 6 5 38 38 H 1.09001 * 109.46843 * 323.29114 * 7 6 5 39 39 H 0.96998 * 119.99690 * 180.02562 * 11 10 8 40 40 H 1.09003 * 109.47495 * 158.12782 * 16 6 5 41 41 H 1.08999 * 109.47255 * 38.12751 * 16 6 5 42 42 H 1.08002 * 119.85145 * 359.97438 * 18 17 16 43 43 H 1.07998 * 120.08411 * 179.74816 * 21 19 18 44 44 H 1.08008 * 120.06039 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2493 6 7 2.1994 -2.1522 0.9577 7 6 3.3966 -2.3929 0.1412 8 6 4.6079 -2.4659 1.0348 9 1 4.4993 -2.3451 2.1024 10 6 5.8548 -2.6859 0.4891 11 7 5.9871 -2.8325 -0.8112 12 14 7.3561 -2.7770 1.5968 13 1 7.1883 -3.8880 2.5676 14 1 8.5664 -3.0203 0.7713 15 1 7.5073 -1.4957 2.3321 16 6 0.9996 -2.6934 0.3055 17 6 -0.0385 -3.0141 1.3497 18 6 -0.2428 -4.3258 1.7397 19 6 -1.1905 -4.6285 2.7025 20 17 -1.4338 -6.2767 3.1906 21 6 -1.9462 -3.6226 3.2716 22 6 -1.7484 -2.2980 2.8778 23 6 -2.5280 -1.2495 3.4640 24 7 -3.1465 -0.4178 3.9289 25 6 -0.7866 -1.9998 1.9102 26 1 -0.3633 0.4004 0.9465 27 1 -0.3633 0.6194 -0.8200 28 1 -0.3633 -1.0198 -0.1264 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 2.0385 -1.7970 -1.0737 33 1 1.3901 -0.4899 -2.0932 34 1 3.0548 -0.3906 -1.4709 35 1 1.3235 -0.5933 2.0606 36 1 3.0016 -0.3012 1.5441 37 1 3.2854 -3.3338 -0.3979 38 1 3.5197 -1.5779 -0.5721 39 1 6.8643 -2.9876 -1.1950 40 1 1.2601 -3.6012 -0.2387 41 1 0.5997 -1.9552 -0.3897 42 1 0.3425 -5.1165 1.2940 43 1 -2.6881 -3.8600 4.0197 44 1 -0.6285 -0.9769 1.6017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307486673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:52 Heat of formation + Delta-G solvation = 94.023581 kcal Electronic energy + Delta-G solvation = -25243.622581 eV Core-core repulsion = 21802.918710 eV Total energy + Delta-G solvation = -3440.703871 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76911 -40.01015 -37.78459 -37.23812 -35.59475 -34.48346 -32.90489 -32.21362 -29.38975 -28.95126 -28.22263 -27.26251 -25.46855 -24.91710 -23.08464 -21.90496 -20.02625 -19.28931 -18.38030 -17.44065 -17.19772 -16.80593 -16.38980 -16.33932 -15.58569 -15.46418 -15.29707 -15.15373 -14.47603 -14.43634 -14.15840 -14.03613 -14.00531 -13.91952 -13.38325 -12.97223 -12.94258 -12.81778 -12.76149 -12.56821 -12.44132 -12.31612 -12.23308 -12.13613 -12.09160 -11.92934 -11.75566 -11.52425 -11.39749 -11.10177 -10.94367 -10.41938 -9.91742 -9.73110 -8.65840 -8.05884 -6.13893 -0.32096 0.13218 1.05291 1.44132 1.45019 1.52492 1.59548 1.81408 2.46399 2.70508 2.77537 3.23618 3.51522 3.76466 3.91486 3.94110 3.99108 4.02497 4.10485 4.18702 4.29251 4.47994 4.58204 4.62335 4.73060 4.74834 4.79495 4.83222 4.95691 4.99854 5.06003 5.09988 5.15570 5.20465 5.27590 5.33758 5.37528 5.47064 5.51556 5.56205 5.61109 5.63852 5.80510 6.24908 6.37027 6.54748 6.76528 7.01166 7.53096 8.99811 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.010698 B = 0.004445 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.650550 B = 6297.923304 C = 7942.791523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.098 4.098 3 C -0.133 4.133 4 C -0.165 4.165 5 C 0.068 3.932 6 N -0.533 5.533 7 C 0.176 3.824 8 C -0.512 4.512 9 H 0.050 0.950 10 C 0.008 3.992 11 N -0.931 5.931 12 Si 0.950 3.050 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.273 1.273 16 C 0.053 3.947 17 C -0.052 4.052 18 C -0.069 4.069 19 C -0.039 4.039 20 Cl -0.060 7.060 21 C -0.061 4.061 22 C -0.021 4.021 23 C 0.282 3.718 24 N -0.450 5.450 25 C -0.080 4.080 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.051 0.949 37 H -0.001 1.001 38 H 0.033 0.967 39 H 0.260 0.740 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.140 0.860 43 H 0.159 0.841 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.316 0.145 2.504 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.100 4.100 3 C -0.191 4.191 4 C -0.222 4.222 5 C -0.061 4.061 6 N -0.256 5.256 7 C 0.051 3.949 8 C -0.551 4.551 9 H 0.069 0.931 10 C -0.190 4.190 11 N -0.572 5.572 12 Si 0.777 3.223 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.073 4.073 17 C -0.053 4.053 18 C -0.089 4.089 19 C -0.065 4.065 20 Cl -0.031 7.031 21 C -0.082 4.082 22 C -0.024 4.024 23 C -0.033 4.033 24 N -0.125 5.125 25 C -0.100 4.100 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.017 0.983 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.158 0.842 43 H 0.177 0.823 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.082 0.991 3.589 17.483 hybrid contribution 1.604 -0.361 -0.460 1.707 sum -15.478 0.630 3.129 15.804 Atomic orbital electron populations 1.22739 0.93331 1.03144 1.02498 1.21143 0.96672 0.96301 0.95845 1.21825 1.00037 0.94987 1.02223 1.22830 0.99596 1.02271 0.97471 1.22323 1.00431 0.87122 0.96211 1.62087 1.01907 1.14663 1.46937 1.20304 0.86403 0.95849 0.92303 1.21550 0.92446 1.47042 0.94067 0.93146 1.25639 1.01510 0.95747 0.96105 1.70034 1.24233 1.51361 1.11619 0.85726 0.79057 0.78646 0.78887 1.19957 1.21205 1.19867 1.21960 0.89910 1.01451 0.93998 1.19715 0.95603 0.92109 0.97847 1.21350 0.95306 0.97374 0.94823 1.20627 0.99875 0.86356 0.99683 1.98387 1.96172 1.17725 1.90779 1.21104 0.98750 0.89391 0.98999 1.15690 0.98117 0.88691 0.99932 1.25547 0.92512 0.92609 0.92636 1.81280 1.10704 1.10597 1.09927 1.22133 0.92325 1.02169 0.93423 0.91161 0.91138 0.90035 0.94503 0.91836 0.91680 0.90483 0.92042 0.94550 0.90485 0.93071 0.98323 0.94947 0.93099 0.91125 0.88183 0.84245 0.82291 0.81921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 6.39 71.98 0.46 -2.75 16 2 C -0.10 -2.63 0.77 -52.18 -0.04 -2.67 16 3 C -0.13 -3.38 8.19 71.98 0.59 -2.79 16 4 C -0.17 -5.17 6.20 71.98 0.45 -4.73 16 5 C 0.07 2.20 4.85 86.30 0.42 2.62 16 6 N -0.53 -19.64 4.46 -905.37 -4.04 -23.68 16 7 C 0.18 8.29 3.41 85.56 0.29 8.59 16 8 C -0.51 -27.59 8.94 25.60 0.23 -27.36 16 9 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 10 C 0.01 0.42 5.46 84.65 0.46 0.88 16 11 N -0.93 -53.57 13.29 21.45 0.28 -53.29 16 12 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 13 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 14 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 15 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 16 C 0.05 1.53 3.71 85.56 0.32 1.85 16 17 C -0.05 -1.24 5.30 -19.91 -0.11 -1.34 16 18 C -0.07 -1.57 9.44 22.35 0.21 -1.36 16 19 C -0.04 -0.78 6.31 22.29 0.14 -0.64 16 20 Cl -0.06 -1.14 28.95 -2.72 -0.08 -1.22 16 21 C -0.06 -1.09 9.54 22.56 0.22 -0.88 16 22 C -0.02 -0.40 5.73 -21.37 -0.12 -0.52 16 23 C 0.28 6.09 15.33 88.33 1.35 7.45 16 24 N -0.45 -11.55 18.54 19.00 0.35 -11.20 16 25 C -0.08 -1.68 7.38 22.54 0.17 -1.52 16 26 H 0.07 1.25 6.40 -2.39 -0.02 1.23 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.57 3.60 -2.39 -0.01 1.56 16 29 H 0.04 1.09 8.09 -2.39 -0.02 1.07 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.08 2.64 2.69 -2.38 -0.01 2.64 16 33 H 0.06 1.60 7.94 -2.39 -0.02 1.59 16 34 H 0.04 1.36 6.75 -2.38 -0.02 1.35 16 35 H 0.08 2.19 6.09 -2.39 -0.01 2.17 16 36 H 0.05 1.97 7.36 -2.39 -0.02 1.96 16 37 H 0.00 -0.06 7.38 -2.38 -0.02 -0.08 16 38 H 0.03 1.59 3.84 -2.39 -0.01 1.58 16 39 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 40 H 0.07 2.15 7.21 -2.39 -0.02 2.13 16 41 H 0.10 2.55 2.35 -2.39 -0.01 2.54 16 42 H 0.14 3.20 8.01 -2.91 -0.02 3.18 16 43 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 44 H 0.16 3.19 2.65 -2.91 -0.01 3.18 16 Total: -1.00 -60.38 352.02 4.62 -55.75 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 1.05 Total: 13.09 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 5.03 Total: -25.18 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -3.40 Total: -88.17 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -60.38 4.62 -55.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307486673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.776 kcal (2) G-P(sol) polarization free energy of solvation -60.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds