Wall clock time and date at job start Tue Mar 31 2020 12:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47098 * 2 1 4 4 C 1.53000 * 109.47036 * 141.71894 * 3 2 1 5 5 C 1.53003 * 109.47216 * 179.49668 * 4 3 2 6 6 C 1.52999 * 109.47121 * 261.71887 * 3 2 1 7 7 N 1.46495 * 109.47321 * 56.17994 * 6 3 2 8 8 C 1.46504 * 120.00076 * 275.24694 * 7 6 3 9 9 C 1.50704 * 109.47324 * 273.67495 * 8 7 6 10 10 H 1.07998 * 119.99634 * 359.97438 * 9 8 7 11 11 C 1.37869 * 119.99876 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00229 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99846 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47323 * 60.00379 * 13 11 9 15 15 H 1.48503 * 109.47415 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47179 * 300.00267 * 13 11 9 17 17 C 1.34777 * 120.00309 * 95.25123 * 7 6 3 18 18 O 1.21621 * 120.00127 * 182.55436 * 17 7 6 19 19 C 1.47317 * 119.99779 * 2.54507 * 17 7 6 20 20 C 1.36564 * 122.96725 * 324.38469 * 19 17 7 21 21 S 1.70591 * 110.55655 * 180.02562 * 20 19 17 22 22 C 1.75687 * 91.86115 * 359.97438 * 21 20 19 23 23 C 1.43197 * 125.05860 * 180.26700 * 22 21 20 24 24 N 9.25049 * 83.81185 * 341.72206 * 2 1 3 25 25 C 1.34875 * 109.88788 * 0.02562 * 22 21 20 26 26 H 1.08999 * 109.46803 * 315.49538 * 1 2 3 27 27 H 1.08993 * 109.46925 * 75.49543 * 1 2 3 28 28 H 1.08997 * 109.46834 * 195.49298 * 1 2 3 29 29 H 1.09004 * 109.46572 * 240.00336 * 2 1 3 30 30 H 1.08991 * 109.47067 * 120.00439 * 2 1 3 31 31 H 1.08998 * 109.47097 * 21.71797 * 3 2 1 32 32 H 1.08993 * 109.46950 * 299.49991 * 4 3 2 33 33 H 1.09003 * 109.47017 * 59.49731 * 4 3 2 34 34 H 1.09005 * 109.46841 * 296.33127 * 5 4 3 35 35 H 1.08997 * 109.46888 * 56.32929 * 5 4 3 36 36 H 1.09000 * 109.46683 * 176.33049 * 5 4 3 37 37 H 1.09001 * 109.47285 * 296.17309 * 6 3 2 38 38 H 1.09001 * 109.47080 * 176.18029 * 6 3 2 39 39 H 1.09002 * 109.46828 * 33.66948 * 8 7 6 40 40 H 1.08994 * 109.47327 * 153.66832 * 8 7 6 41 41 H 0.96999 * 119.99725 * 179.97438 * 12 11 9 42 42 H 1.08000 * 124.72066 * 0.05277 * 20 19 17 43 43 H 1.08000 * 123.18905 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.2776 1.5458 0.8937 5 6 3.7951 2.9857 0.8838 6 6 2.4059 1.8541 -1.4275 7 7 1.2454 1.6683 -2.3019 8 6 0.9769 0.3553 -2.8938 9 6 1.7505 0.2162 -4.1796 10 1 2.3789 1.0251 -4.5219 11 6 1.6559 -0.9437 -4.9190 12 7 0.8902 -1.9285 -4.5024 13 14 2.6142 -1.1158 -6.5131 14 1 4.0669 -0.9859 -6.2339 15 1 2.3421 -2.4468 -7.1131 16 1 2.1950 -0.0515 -7.4601 17 6 0.4247 2.7053 -2.5620 18 8 -0.5644 2.5402 -3.2502 19 6 0.7257 4.0386 -2.0126 20 6 1.2866 4.2258 -0.7816 21 16 1.4954 5.8890 -0.4652 22 6 0.8134 6.3296 -2.0232 23 6 0.6575 7.6696 -2.5036 24 7 0.5329 8.7326 -2.8843 25 6 0.4635 5.2178 -2.7018 26 1 -0.3633 0.7329 0.7204 27 1 -0.3633 0.2574 -0.9949 28 1 -0.3633 -0.9903 0.2745 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.2611 2.1032 0.3803 32 1 3.0149 1.2612 1.9124 33 1 4.0535 0.8784 0.5185 34 1 4.1188 3.2485 -0.1234 35 1 2.9982 3.6602 1.1969 36 1 4.6368 3.0739 1.5706 37 1 3.2314 1.2374 -1.7831 38 1 2.7048 2.9022 -1.4381 39 1 1.2839 -0.4262 -2.1987 40 1 -0.0894 0.2605 -3.0991 41 1 0.8234 -2.7443 -5.0228 42 1 1.5603 3.4314 -0.1031 43 1 0.0222 5.2410 -3.6873 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347814286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:38 Heat of formation + Delta-G solvation = 35.060521 kcal Electronic energy + Delta-G solvation = -25423.819980 eV Core-core repulsion = 21982.602985 eV Total energy + Delta-G solvation = -3441.216995 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.23196 -37.85192 -37.14986 -36.25737 -34.13135 -32.59363 -32.05689 -30.42223 -28.28550 -26.95769 -25.63892 -24.41843 -23.62972 -21.85236 -21.28848 -20.66056 -19.06014 -18.12531 -16.84094 -16.74703 -16.18895 -15.48115 -15.02399 -14.60459 -14.40470 -14.23517 -14.04121 -13.94414 -13.58707 -13.52308 -13.07478 -12.85574 -12.71486 -12.69003 -12.58741 -12.31260 -12.13085 -11.88317 -11.57338 -11.35528 -11.26861 -11.22588 -11.00070 -10.93604 -10.77139 -10.38864 -10.33923 -10.11812 -9.90637 -9.59740 -9.17481 -9.01229 -8.67725 -8.43277 -7.69118 -6.08298 -4.12865 0.24151 0.96261 1.56553 1.85719 2.72067 3.10178 3.29248 3.34467 3.36342 3.51470 3.77748 3.95338 4.41576 4.65385 4.78122 4.92309 5.00016 5.10795 5.16127 5.26241 5.27486 5.45276 5.49872 5.56740 5.65216 5.71814 5.81810 5.87340 5.91152 5.97784 6.03010 6.07237 6.12564 6.29267 6.35382 6.44893 6.59610 6.78599 7.12578 7.25712 7.38781 7.49862 7.88070 8.19429 8.29998 8.82174 8.98024 9.52065 10.99212 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.004862 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.895435 B = 5757.222434 C = 7191.623097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C -0.116 4.116 4 C -0.119 4.119 5 C -0.163 4.163 6 C 0.099 3.901 7 N -0.578 5.578 8 C 0.235 3.765 9 C -0.531 4.531 10 H 0.057 0.943 11 C 0.064 3.936 12 N -0.893 5.893 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.277 1.277 17 C 0.563 3.437 18 O -0.533 6.533 19 C -0.140 4.140 20 C -0.222 4.222 21 S 0.248 5.752 22 C -0.179 4.179 23 C 0.288 3.712 24 N -0.412 5.412 25 C -0.011 4.011 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.264 0.736 42 H 0.204 0.796 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.079 9.509 14.332 17.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C -0.136 4.136 4 C -0.157 4.157 5 C -0.220 4.220 6 C -0.025 4.025 7 N -0.308 5.308 8 C 0.117 3.883 9 C -0.570 4.570 10 H 0.075 0.925 11 C -0.138 4.138 12 N -0.531 5.531 13 Si 0.723 3.277 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C 0.347 3.653 18 O -0.411 6.411 19 C -0.157 4.157 20 C -0.361 4.361 21 S 0.516 5.484 22 C -0.299 4.299 23 C -0.028 4.028 24 N -0.089 5.089 25 C -0.047 4.047 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.220 0.780 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.893 11.657 14.557 19.281 hybrid contribution 0.020 -1.493 -1.965 2.468 sum 4.913 10.165 12.592 16.912 Atomic orbital electron populations 1.21953 0.95692 1.00700 1.02876 1.21847 0.96449 0.95178 1.02947 1.22003 0.97350 0.98335 0.95866 1.21631 0.97492 0.97041 0.99526 1.21995 1.00875 0.96839 1.02338 1.21953 0.89936 1.01853 0.88759 1.48058 1.24870 1.11925 1.45937 1.19702 0.98452 0.77022 0.93129 1.21424 1.27720 1.00944 1.06925 0.92498 1.24891 0.95448 0.95678 0.97825 1.69910 1.38314 1.05783 1.39117 0.86602 0.80165 0.77271 0.83643 1.20266 1.21204 1.20226 1.17506 0.83823 0.82933 0.81031 1.90795 1.27462 1.83873 1.38995 1.19372 1.05051 0.96090 0.95161 1.27382 1.03766 1.02764 1.02178 1.82992 1.56175 0.97033 1.12230 1.19801 1.17936 0.89775 1.02342 1.24263 0.93460 0.91255 0.93792 1.81283 1.09344 1.10740 1.07539 1.20386 0.94986 0.88518 1.00773 0.93957 0.91037 0.93218 0.89074 0.92716 0.91026 0.91731 0.91149 0.91970 0.93210 0.92437 0.89563 0.90456 0.92887 0.93517 0.92634 0.78033 0.82194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.36 37.16 0.35 -1.99 16 2 C -0.13 -1.77 5.11 -26.73 -0.14 -1.90 16 3 C -0.12 -1.37 1.74 -90.62 -0.16 -1.53 16 4 C -0.12 -1.08 5.23 -26.73 -0.14 -1.22 16 5 C -0.16 -1.24 8.78 37.16 0.33 -0.92 16 6 C 0.10 1.43 3.92 -4.04 -0.02 1.41 16 7 N -0.58 -10.98 1.83 -176.37 -0.32 -11.31 16 8 C 0.24 5.56 3.12 -5.19 -0.02 5.55 16 9 C -0.53 -14.13 9.39 -34.44 -0.32 -14.45 16 10 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 13 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 C 0.56 10.95 7.47 -12.57 -0.09 10.85 16 18 O -0.53 -12.73 16.47 5.26 0.09 -12.64 16 19 C -0.14 -2.04 5.23 -106.50 -0.56 -2.60 16 20 C -0.22 -2.45 7.89 30.13 0.24 -2.21 16 21 S 0.25 2.18 23.03 -107.50 -2.48 -0.30 16 22 C -0.18 -2.04 6.24 -38.85 -0.24 -2.28 16 23 C 0.29 3.61 15.79 -22.47 -0.35 3.26 16 24 N -0.41 -5.86 18.54 41.84 0.78 -5.09 16 25 C -0.01 -0.15 9.86 -40.46 -0.40 -0.55 16 26 H 0.04 0.56 7.71 -51.93 -0.40 0.16 16 27 H 0.07 1.31 5.43 -51.93 -0.28 1.03 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.54 4.91 -51.93 -0.26 1.29 16 30 H 0.05 0.66 7.72 -51.93 -0.40 0.26 16 31 H 0.07 0.81 5.22 -51.93 -0.27 0.54 16 32 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.49 6.71 -51.93 -0.35 0.14 16 35 H 0.05 0.34 6.80 -51.93 -0.35 -0.02 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 38 H 0.08 0.96 3.68 -51.93 -0.19 0.77 16 39 H 0.05 1.24 4.33 -51.93 -0.22 1.01 16 40 H 0.05 1.28 6.97 -51.93 -0.36 0.92 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.20 2.04 1.38 -52.49 -0.07 1.97 16 43 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -30.84 354.32 -7.74 -38.59 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.24 Total: 0.76 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -1.62 Total: -6.94 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 1.19 Total: -40.90 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.48 Total: -0.30 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.84 -7.74 -38.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347814286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.647 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds