Wall clock time and date at job start Tue Mar 31 2020 12:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47098 * 2 1 4 4 C 1.53000 * 109.47036 * 141.71894 * 3 2 1 5 5 C 1.53003 * 109.47216 * 179.49668 * 4 3 2 6 6 C 1.52999 * 109.47121 * 261.71887 * 3 2 1 7 7 N 1.46495 * 109.47321 * 56.17994 * 6 3 2 8 8 C 1.46504 * 120.00076 * 275.24694 * 7 6 3 9 9 C 1.50704 * 109.47324 * 273.67495 * 8 7 6 10 10 H 1.07998 * 119.99634 * 359.97438 * 9 8 7 11 11 C 1.37869 * 119.99876 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00229 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99846 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47323 * 60.00379 * 13 11 9 15 15 H 1.48503 * 109.47415 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47179 * 300.00267 * 13 11 9 17 17 C 1.34777 * 120.00309 * 95.25123 * 7 6 3 18 18 O 1.21621 * 120.00127 * 182.55436 * 17 7 6 19 19 C 1.47317 * 119.99779 * 2.54507 * 17 7 6 20 20 C 1.36564 * 122.96725 * 324.38469 * 19 17 7 21 21 S 1.70591 * 110.55655 * 180.02562 * 20 19 17 22 22 C 1.75687 * 91.86115 * 359.97438 * 21 20 19 23 23 C 1.43197 * 125.05860 * 180.26700 * 22 21 20 24 24 N 9.25049 * 83.81185 * 341.72206 * 2 1 3 25 25 C 1.34875 * 109.88788 * 0.02562 * 22 21 20 26 26 H 1.08999 * 109.46803 * 315.49538 * 1 2 3 27 27 H 1.08993 * 109.46925 * 75.49543 * 1 2 3 28 28 H 1.08997 * 109.46834 * 195.49298 * 1 2 3 29 29 H 1.09004 * 109.46572 * 240.00336 * 2 1 3 30 30 H 1.08991 * 109.47067 * 120.00439 * 2 1 3 31 31 H 1.08998 * 109.47097 * 21.71797 * 3 2 1 32 32 H 1.08993 * 109.46950 * 299.49991 * 4 3 2 33 33 H 1.09003 * 109.47017 * 59.49731 * 4 3 2 34 34 H 1.09005 * 109.46841 * 296.33127 * 5 4 3 35 35 H 1.08997 * 109.46888 * 56.32929 * 5 4 3 36 36 H 1.09000 * 109.46683 * 176.33049 * 5 4 3 37 37 H 1.09001 * 109.47285 * 296.17309 * 6 3 2 38 38 H 1.09001 * 109.47080 * 176.18029 * 6 3 2 39 39 H 1.09002 * 109.46828 * 33.66948 * 8 7 6 40 40 H 1.08994 * 109.47327 * 153.66832 * 8 7 6 41 41 H 0.96999 * 119.99725 * 179.97438 * 12 11 9 42 42 H 1.08000 * 124.72066 * 0.05277 * 20 19 17 43 43 H 1.08000 * 123.18905 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.2776 1.5458 0.8937 5 6 3.7951 2.9857 0.8838 6 6 2.4059 1.8541 -1.4275 7 7 1.2454 1.6683 -2.3019 8 6 0.9769 0.3553 -2.8938 9 6 1.7505 0.2162 -4.1796 10 1 2.3789 1.0251 -4.5219 11 6 1.6559 -0.9437 -4.9190 12 7 0.8902 -1.9285 -4.5024 13 14 2.6142 -1.1158 -6.5131 14 1 4.0669 -0.9859 -6.2339 15 1 2.3421 -2.4468 -7.1131 16 1 2.1950 -0.0515 -7.4601 17 6 0.4247 2.7053 -2.5620 18 8 -0.5644 2.5402 -3.2502 19 6 0.7257 4.0386 -2.0126 20 6 1.2866 4.2258 -0.7816 21 16 1.4954 5.8890 -0.4652 22 6 0.8134 6.3296 -2.0232 23 6 0.6575 7.6696 -2.5036 24 7 0.5329 8.7326 -2.8843 25 6 0.4635 5.2178 -2.7018 26 1 -0.3633 0.7329 0.7204 27 1 -0.3633 0.2574 -0.9949 28 1 -0.3633 -0.9903 0.2745 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.2611 2.1032 0.3803 32 1 3.0149 1.2612 1.9124 33 1 4.0535 0.8784 0.5185 34 1 4.1188 3.2485 -0.1234 35 1 2.9982 3.6602 1.1969 36 1 4.6368 3.0739 1.5706 37 1 3.2314 1.2374 -1.7831 38 1 2.7048 2.9022 -1.4381 39 1 1.2839 -0.4262 -2.1987 40 1 -0.0894 0.2605 -3.0991 41 1 0.8234 -2.7443 -5.0228 42 1 1.5603 3.4314 -0.1031 43 1 0.0222 5.2410 -3.6873 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347814286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:37 Heat of formation + Delta-G solvation = 18.044085 kcal Electronic energy + Delta-G solvation = -25424.557868 eV Core-core repulsion = 21982.602985 eV Total energy + Delta-G solvation = -3441.954883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54670 -38.93168 -38.44756 -37.37325 -35.68119 -34.43631 -33.13124 -31.54665 -29.71114 -28.42637 -26.72870 -25.55689 -25.27755 -22.85038 -22.72744 -21.66291 -20.01560 -19.44326 -18.70929 -18.00304 -17.44230 -16.92315 -16.45214 -16.21824 -15.47933 -15.33522 -15.32420 -14.96873 -14.88228 -14.47468 -14.32354 -14.07234 -13.96867 -13.75199 -13.69009 -13.50259 -13.39692 -13.23259 -13.04961 -12.82712 -12.64220 -12.51132 -12.28642 -12.21875 -12.13229 -11.78027 -11.65147 -11.29330 -11.29181 -11.14987 -10.72357 -10.51910 -9.97365 -9.62336 -9.28357 -8.17244 -6.30472 -0.72470 0.08145 0.61922 0.71920 1.38210 1.41709 1.48453 1.69086 1.99877 2.19022 2.41780 2.49833 2.81559 3.12279 3.62529 3.81455 3.89231 3.99253 4.11212 4.18770 4.43697 4.50351 4.52929 4.57761 4.62835 4.67341 4.81945 4.83169 4.94748 4.99687 5.10330 5.12215 5.15197 5.26977 5.32429 5.38062 5.46749 5.50813 5.56602 5.64892 5.66840 5.93693 6.15080 6.26623 6.75259 6.80737 7.31125 7.47487 8.88487 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.004862 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.895435 B = 5757.222434 C = 7191.623097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.113 4.113 5 C -0.167 4.167 6 C 0.095 3.905 7 N -0.580 5.580 8 C 0.255 3.745 9 C -0.546 4.546 10 H 0.051 0.949 11 C 0.013 3.987 12 N -0.924 5.924 13 Si 0.958 3.042 14 H -0.261 1.261 15 H -0.281 1.281 16 H -0.281 1.281 17 C 0.556 3.444 18 O -0.596 6.596 19 C -0.168 4.168 20 C -0.214 4.214 21 S 0.380 5.620 22 C -0.188 4.188 23 C 0.306 3.694 24 N -0.442 5.442 25 C -0.024 4.024 26 H 0.065 0.935 27 H 0.029 0.971 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.057 0.943 40 H -0.004 1.004 41 H 0.265 0.735 42 H 0.215 0.785 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.567 11.499 17.244 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.128 4.128 4 C -0.151 4.151 5 C -0.224 4.224 6 C -0.028 4.028 7 N -0.308 5.308 8 C 0.134 3.866 9 C -0.585 4.585 10 H 0.069 0.931 11 C -0.186 4.186 12 N -0.564 5.564 13 Si 0.783 3.217 14 H -0.185 1.185 15 H -0.206 1.206 16 H -0.207 1.207 17 C 0.343 3.657 18 O -0.478 6.478 19 C -0.184 4.184 20 C -0.354 4.354 21 S 0.649 5.351 22 C -0.308 4.308 23 C -0.010 4.010 24 N -0.120 5.120 25 C -0.060 4.060 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.122 0.878 39 H 0.074 0.926 40 H 0.014 0.986 41 H 0.074 0.926 42 H 0.231 0.769 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.428 13.673 17.508 23.423 hybrid contribution -0.753 -2.072 -2.754 3.528 sum 6.675 11.601 14.754 19.920 Atomic orbital electron populations 1.21919 0.96836 1.01310 1.00954 1.21780 0.95360 0.96742 1.02258 1.21957 0.99297 0.96870 0.94639 1.21604 0.95607 0.98455 0.99439 1.22047 1.01973 0.95688 1.02727 1.22262 0.87787 1.03295 0.89410 1.47983 1.26174 1.10335 1.46291 1.19151 0.94866 0.79836 0.92707 1.21773 1.27712 1.00771 1.08229 0.93075 1.25713 0.96395 0.95437 1.01051 1.70031 1.39636 1.06254 1.40463 0.85614 0.79577 0.77073 0.79425 1.18513 1.20579 1.20724 1.18238 0.82746 0.84626 0.80094 1.90744 1.30000 1.85126 1.41939 1.18798 1.09082 0.93384 0.97162 1.27557 1.01499 1.05736 1.00583 1.82651 1.51840 0.92727 1.07930 1.19863 1.18190 0.88533 1.04223 1.24286 0.92584 0.91097 0.93000 1.81307 1.10377 1.11901 1.08385 1.20175 0.96108 0.88913 1.00767 0.91624 0.95209 0.93274 0.92764 0.90107 0.89774 0.89911 0.91570 0.92325 0.91769 0.90798 0.90778 0.87844 0.92579 0.98598 0.92560 0.76924 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 9.36 71.98 0.67 -4.04 16 2 C -0.12 -3.41 5.11 30.60 0.16 -3.25 16 3 C -0.11 -2.35 1.74 -10.79 -0.02 -2.37 16 4 C -0.11 -1.63 5.23 30.60 0.16 -1.47 16 5 C -0.17 -1.73 8.78 71.98 0.63 -1.09 16 6 C 0.09 2.68 3.92 86.38 0.34 3.01 16 7 N -0.58 -23.11 1.83 -830.16 -1.52 -24.63 16 8 C 0.25 12.97 3.12 85.63 0.27 13.24 16 9 C -0.55 -30.54 9.39 25.60 0.24 -30.30 16 10 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 11 C 0.01 0.75 5.46 84.65 0.46 1.21 16 12 N -0.92 -54.61 13.29 21.44 0.28 -54.32 16 13 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 14 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 17 C 0.56 22.80 7.47 86.63 0.65 23.45 16 18 O -0.60 -30.91 16.47 -4.10 -0.07 -30.98 16 19 C -0.17 -4.82 5.23 -21.08 -0.11 -4.93 16 20 C -0.21 -4.05 7.89 67.43 0.53 -3.52 16 21 S 0.38 4.81 23.03 -56.49 -1.30 3.51 16 22 C -0.19 -3.85 6.24 22.74 0.14 -3.71 16 23 C 0.31 7.10 15.79 88.33 1.39 8.49 16 24 N -0.44 -11.99 18.54 19.00 0.35 -11.64 16 25 C -0.02 -0.64 9.86 21.70 0.21 -0.43 16 26 H 0.06 1.67 7.71 -2.39 -0.02 1.65 16 27 H 0.03 1.16 5.43 -2.39 -0.01 1.15 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.91 4.91 -2.38 -0.01 1.90 16 30 H 0.08 1.79 7.72 -2.39 -0.02 1.77 16 31 H 0.08 1.64 5.22 -2.39 -0.01 1.63 16 32 H 0.08 0.96 8.13 -2.39 -0.02 0.94 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 0.66 6.71 -2.38 -0.02 0.64 16 35 H 0.06 0.47 6.80 -2.39 -0.02 0.46 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 2.28 8.11 -2.39 -0.02 2.26 16 38 H 0.10 2.34 3.68 -2.39 -0.01 2.33 16 39 H 0.06 2.82 4.33 -2.39 -0.01 2.81 16 40 H 0.00 -0.25 6.97 -2.39 -0.02 -0.26 16 41 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.21 3.48 1.38 -2.91 0.00 3.47 16 43 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -74.10 354.32 6.57 -67.54 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.06 Total: 9.89 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 5.73 Total: -5.69 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -0.88 Total: -90.59 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.07 Total: -30.98 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -1.30 Total: 3.51 kcal Total: -74.10 6.57 -67.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347814286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.581 kcal (2) G-P(sol) polarization free energy of solvation -74.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds