Wall clock time and date at job start Tue Mar 31 2020 12:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30268 * 126.28166 * 2 1 4 4 N 1.28666 * 109.38347 * 180.02562 * 3 2 1 5 5 C 1.30278 * 109.37750 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.28139 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47000 * 165.02493 * 6 5 4 8 8 C 1.52995 * 109.47256 * 285.02262 * 6 5 4 9 9 N 1.46502 * 109.47191 * 45.02698 * 6 5 4 10 10 C 1.34776 * 120.00065 * 154.99918 * 9 6 5 11 11 O 1.21594 * 119.99804 * 359.97438 * 10 9 6 12 12 N 1.34776 * 120.00060 * 180.02562 * 10 9 6 13 13 C 1.40193 * 120.00043 * 180.02562 * 12 10 9 14 14 C 1.40402 * 125.97069 * 359.97438 * 13 12 10 15 15 C 1.35245 * 107.86627 * 179.77501 * 14 13 12 16 16 N 1.34963 * 107.85990 * 0.22862 * 15 14 13 17 17 C 1.46495 * 125.98010 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47319 * 125.00174 * 17 16 15 19 19 H 1.07996 * 120.00446 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99818 * 180.02562 * 18 17 16 21 21 N 1.31503 * 120.00345 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99856 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47124 * 59.99762 * 22 20 18 24 24 H 1.48490 * 109.47143 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46858 * 300.00110 * 22 20 18 26 26 N 1.31205 * 125.97551 * 180.17889 * 13 12 10 27 27 O 1.34359 * 107.43699 * 0.24473 * 5 4 3 28 28 H 1.08995 * 109.47376 * 89.97587 * 1 2 3 29 29 H 1.09003 * 109.47202 * 209.97854 * 1 2 3 30 30 H 1.09002 * 109.47121 * 329.97273 * 1 2 3 31 31 H 1.09001 * 109.46927 * 60.00187 * 8 6 5 32 32 H 1.09000 * 109.47260 * 179.97438 * 8 6 5 33 33 H 1.09000 * 109.47805 * 300.00565 * 8 6 5 34 34 H 0.96998 * 119.99397 * 335.00388 * 9 6 5 35 35 H 0.96998 * 119.99402 * 359.97438 * 12 10 9 36 36 H 1.08002 * 126.07048 * 0.04567 * 14 13 12 37 37 H 1.07999 * 126.07438 * 180.24830 * 15 14 13 38 38 H 1.09005 * 109.47217 * 245.00508 * 17 16 15 39 39 H 1.09005 * 109.47021 * 4.99647 * 17 16 15 40 40 H 0.97001 * 120.00648 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0004 6 6 4.8176 -1.4638 -0.0014 7 1 4.5675 -2.4909 0.2646 8 6 5.4481 -1.4371 -1.3951 9 7 5.7675 -0.9241 0.9748 10 6 6.7004 -1.7278 1.5227 11 8 6.7534 -2.9009 1.2072 12 7 7.5739 -1.2314 2.4211 13 6 8.5446 -2.0672 2.9906 14 6 8.7193 -3.4334 2.7180 15 6 9.7593 -3.8752 3.4612 16 7 10.2248 -2.8336 4.1822 17 6 11.3473 -2.8711 5.1228 18 6 12.3586 -1.8214 4.7403 19 1 12.1830 -1.1897 3.8821 20 6 13.5086 -1.6681 5.4854 21 7 13.7227 -2.4376 6.5301 22 14 14.7625 -0.3674 5.0108 23 1 14.1256 0.9733 5.0541 24 1 15.9002 -0.4054 5.9643 25 1 15.2582 -0.6358 3.6369 26 7 9.4464 -1.7104 3.8745 27 8 2.3021 -1.0831 -0.0051 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5143 31 1 5.6983 -0.4101 -1.6611 32 1 6.3541 -2.0432 -1.3957 33 1 4.7415 -1.8386 -2.1215 34 1 5.7248 0.0116 1.2267 35 1 7.5312 -0.2957 2.6730 36 1 8.1308 -4.0254 2.0327 37 1 10.1484 -4.8826 3.4752 38 1 10.9831 -2.6744 6.1312 39 1 11.8151 -3.8551 5.0911 40 1 14.5315 -2.3296 7.0545 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365767503.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:33 Heat of formation + Delta-G solvation = 99.771892 kcal Electronic energy + Delta-G solvation = -25440.754925 eV Core-core repulsion = 21488.343563 eV Total energy + Delta-G solvation = -3952.411363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.71032 -40.82076 -39.75644 -36.67142 -36.45219 -34.71867 -33.45590 -33.11984 -31.47242 -30.37984 -29.28460 -28.47852 -26.64491 -25.20158 -23.50801 -23.01847 -22.45088 -21.33475 -20.42500 -19.96855 -18.49072 -17.92930 -17.34801 -16.97983 -16.56843 -16.15259 -15.58304 -15.31221 -15.11694 -14.81185 -14.31919 -14.21888 -14.01196 -13.84644 -13.46733 -13.33541 -12.87634 -12.82666 -12.59079 -12.34374 -12.29956 -12.22894 -12.07482 -11.78207 -11.33771 -11.06748 -10.86370 -10.48302 -10.25962 -10.18933 -10.01340 -9.74152 -9.60366 -9.48675 -8.62066 -8.12613 -7.44399 -6.23336 -4.28418 0.61087 1.53914 1.89104 2.37683 2.59694 3.03622 3.23809 3.26610 3.29841 3.34121 3.51895 3.78570 3.89676 4.20778 4.34642 4.35070 4.58517 4.67011 4.69862 4.80303 4.98665 5.00535 5.11733 5.25059 5.28413 5.39419 5.52634 5.77901 5.80234 5.97791 6.20540 6.48309 6.52421 6.83550 6.96644 7.08628 7.44771 7.69128 7.77404 7.82363 7.92971 8.05967 8.43838 8.64692 8.80991 9.37120 10.85293 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.026934 B = 0.002116 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.312603 B =13229.539066 C =13586.005081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.166 3.834 3 N -0.287 5.287 4 N -0.273 5.273 5 C 0.155 3.845 6 C 0.268 3.732 7 H 0.123 0.877 8 C -0.161 4.161 9 N -0.737 5.737 10 C 0.721 3.279 11 O -0.563 6.563 12 N -0.639 5.639 13 C 0.274 3.726 14 C -0.286 4.286 15 C 0.051 3.949 16 N -0.319 5.319 17 C 0.259 3.741 18 C -0.529 4.529 19 H 0.068 0.932 20 C 0.062 3.938 21 N -0.895 5.895 22 Si 0.908 3.092 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.275 1.275 26 N -0.305 5.305 27 O -0.218 6.218 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.407 0.593 35 H 0.409 0.591 36 H 0.161 0.839 37 H 0.168 0.832 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.897 1.381 -14.130 28.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.045 4.045 3 N -0.134 5.134 4 N -0.120 5.120 5 C -0.057 4.057 6 C 0.160 3.840 7 H 0.141 0.859 8 C -0.220 4.220 9 N -0.396 5.396 10 C 0.421 3.579 11 O -0.438 6.438 12 N -0.288 5.288 13 C 0.020 3.980 14 C -0.317 4.317 15 C -0.099 4.099 16 N -0.101 5.101 17 C 0.141 3.859 18 C -0.567 4.567 19 H 0.087 0.913 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.735 3.265 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.200 1.200 26 N -0.136 5.136 27 O -0.096 6.096 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.242 0.758 35 H 0.244 0.756 36 H 0.179 0.821 37 H 0.185 0.815 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.782 2.437 -13.469 27.440 hybrid contribution 0.003 -0.157 -0.322 0.359 sum -23.779 2.280 -13.791 27.583 Atomic orbital electron populations 1.20406 0.79900 1.05982 1.05429 1.28149 0.97974 0.79469 0.98912 1.74437 0.95872 1.25465 1.17658 1.74342 1.12490 1.08886 1.16275 1.27980 0.85454 0.91761 1.00478 1.18831 0.78846 0.95412 0.90913 0.85921 1.22258 1.02446 1.04188 0.93069 1.44894 1.34161 1.13695 1.46833 1.15404 0.79040 0.84641 0.78861 1.90886 1.73602 1.14550 1.64780 1.41283 1.31502 1.12841 1.43209 1.18748 0.91866 0.90246 0.97116 1.21500 1.05252 0.93963 1.11029 1.22562 0.96707 0.94933 0.95652 1.49072 1.24718 1.03813 1.32514 1.19740 0.80013 0.99458 0.86676 1.21218 1.03102 1.18389 1.14014 0.91343 1.24943 0.98040 0.96466 0.94628 1.69901 1.27401 1.38770 1.17289 0.86384 0.80089 0.81680 0.78324 1.19941 1.21067 1.20037 1.77339 1.07175 1.10053 1.19056 1.84790 1.17103 1.38343 1.69410 0.88109 0.88654 0.87319 0.91013 0.89225 0.90933 0.75760 0.75592 0.82123 0.81486 0.93740 0.92508 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.17 10.51 36.01 0.38 0.21 16 2 C 0.17 1.33 8.48 -12.94 -0.11 1.22 16 3 N -0.29 -3.13 12.22 32.55 0.40 -2.73 16 4 N -0.27 -3.09 11.93 32.55 0.39 -2.70 16 5 C 0.16 1.52 7.27 -12.94 -0.09 1.42 16 6 C 0.27 2.44 3.12 -69.08 -0.22 2.23 16 7 H 0.12 1.13 7.58 -51.93 -0.39 0.73 16 8 C -0.16 -1.28 9.47 37.16 0.35 -0.92 16 9 N -0.74 -7.59 5.07 -59.81 -0.30 -7.89 16 10 C 0.72 10.07 8.50 -86.92 -0.74 9.34 16 11 O -0.56 -9.30 13.13 5.28 0.07 -9.23 16 12 N -0.64 -9.75 5.46 -15.51 -0.08 -9.83 16 13 C 0.27 5.43 8.11 -154.37 -1.25 4.18 16 14 C -0.29 -5.57 9.61 -39.83 -0.38 -5.95 16 15 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 16 N -0.32 -7.38 3.67 -62.56 -0.23 -7.61 16 17 C 0.26 6.55 6.26 -5.20 -0.03 6.52 16 18 C -0.53 -14.69 9.24 -34.44 -0.32 -15.01 16 19 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.90 -25.31 13.28 55.43 0.74 -24.57 16 22 Si 0.91 21.39 29.54 -169.99 -5.02 16.37 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 N -0.31 -6.98 12.42 31.44 0.39 -6.59 16 27 O -0.22 -1.98 10.87 5.39 0.06 -1.92 16 28 H 0.10 0.12 8.14 -51.93 -0.42 -0.31 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.41 3.67 8.37 -40.82 -0.34 3.33 16 35 H 0.41 5.16 8.84 -40.82 -0.36 4.80 16 36 H 0.16 3.02 5.91 -52.49 -0.31 2.71 16 37 H 0.17 2.68 8.06 -52.49 -0.42 2.25 16 38 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 40 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -34.50 356.30 -5.69 -40.18 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.75 Total: 5.49 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -2.71 Total: 5.66 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: 1.30 Total: -61.93 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.13 Total: -11.15 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.50 -5.69 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365767503.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.956 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds