Wall clock time and date at job start Tue Mar 31 2020 12:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30268 * 126.28166 * 2 1 4 4 N 1.28666 * 109.38347 * 180.02562 * 3 2 1 5 5 C 1.30278 * 109.37750 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.28139 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47000 * 165.02493 * 6 5 4 8 8 C 1.52995 * 109.47256 * 285.02262 * 6 5 4 9 9 N 1.46502 * 109.47191 * 45.02698 * 6 5 4 10 10 C 1.34776 * 120.00065 * 154.99918 * 9 6 5 11 11 O 1.21594 * 119.99804 * 359.97438 * 10 9 6 12 12 N 1.34776 * 120.00060 * 180.02562 * 10 9 6 13 13 C 1.40193 * 120.00043 * 180.02562 * 12 10 9 14 14 C 1.40402 * 125.97069 * 359.97438 * 13 12 10 15 15 C 1.35245 * 107.86627 * 179.77501 * 14 13 12 16 16 N 1.34963 * 107.85990 * 0.22862 * 15 14 13 17 17 C 1.46495 * 125.98010 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47319 * 125.00174 * 17 16 15 19 19 H 1.07996 * 120.00446 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99818 * 180.02562 * 18 17 16 21 21 N 1.31503 * 120.00345 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99856 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47124 * 59.99762 * 22 20 18 24 24 H 1.48490 * 109.47143 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46858 * 300.00110 * 22 20 18 26 26 N 1.31205 * 125.97551 * 180.17889 * 13 12 10 27 27 O 1.34359 * 107.43699 * 0.24473 * 5 4 3 28 28 H 1.08995 * 109.47376 * 89.97587 * 1 2 3 29 29 H 1.09003 * 109.47202 * 209.97854 * 1 2 3 30 30 H 1.09002 * 109.47121 * 329.97273 * 1 2 3 31 31 H 1.09001 * 109.46927 * 60.00187 * 8 6 5 32 32 H 1.09000 * 109.47260 * 179.97438 * 8 6 5 33 33 H 1.09000 * 109.47805 * 300.00565 * 8 6 5 34 34 H 0.96998 * 119.99397 * 335.00388 * 9 6 5 35 35 H 0.96998 * 119.99402 * 359.97438 * 12 10 9 36 36 H 1.08002 * 126.07048 * 0.04567 * 14 13 12 37 37 H 1.07999 * 126.07438 * 180.24830 * 15 14 13 38 38 H 1.09005 * 109.47217 * 245.00508 * 17 16 15 39 39 H 1.09005 * 109.47021 * 4.99647 * 17 16 15 40 40 H 0.97001 * 120.00648 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0004 6 6 4.8176 -1.4638 -0.0014 7 1 4.5675 -2.4909 0.2646 8 6 5.4481 -1.4371 -1.3951 9 7 5.7675 -0.9241 0.9748 10 6 6.7004 -1.7278 1.5227 11 8 6.7534 -2.9009 1.2072 12 7 7.5739 -1.2314 2.4211 13 6 8.5446 -2.0672 2.9906 14 6 8.7193 -3.4334 2.7180 15 6 9.7593 -3.8752 3.4612 16 7 10.2248 -2.8336 4.1822 17 6 11.3473 -2.8711 5.1228 18 6 12.3586 -1.8214 4.7403 19 1 12.1830 -1.1897 3.8821 20 6 13.5086 -1.6681 5.4854 21 7 13.7227 -2.4376 6.5301 22 14 14.7625 -0.3674 5.0108 23 1 14.1256 0.9733 5.0541 24 1 15.9002 -0.4054 5.9643 25 1 15.2582 -0.6358 3.6369 26 7 9.4464 -1.7104 3.8745 27 8 2.3021 -1.0831 -0.0051 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5143 31 1 5.6983 -0.4101 -1.6611 32 1 6.3541 -2.0432 -1.3957 33 1 4.7415 -1.8386 -2.1215 34 1 5.7248 0.0116 1.2267 35 1 7.5312 -0.2957 2.6730 36 1 8.1308 -4.0254 2.0327 37 1 10.1484 -4.8826 3.4752 38 1 10.9831 -2.6744 6.1312 39 1 11.8151 -3.8551 5.0911 40 1 14.5315 -2.3296 7.0545 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365767503.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:33 Heat of formation + Delta-G solvation = 71.547871 kcal Electronic energy + Delta-G solvation = -25441.978811 eV Core-core repulsion = 21488.343563 eV Total energy + Delta-G solvation = -3953.635248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.138 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.41023 -42.25313 -41.06066 -37.50022 -37.30426 -36.12338 -35.29457 -33.86205 -32.86500 -31.55939 -30.87192 -29.02431 -28.50272 -26.00072 -25.07752 -23.91500 -23.49404 -22.45417 -21.80524 -21.36500 -19.62308 -18.71476 -18.63629 -18.35895 -17.96935 -17.46934 -16.85722 -16.54178 -16.22475 -15.94059 -15.69048 -15.51965 -15.09562 -14.57367 -14.48981 -14.20555 -13.92973 -13.78670 -13.68995 -13.61027 -13.55555 -13.25889 -13.03172 -12.94036 -12.74585 -12.71494 -12.26989 -12.10213 -12.01506 -11.65606 -11.40891 -11.19069 -10.73926 -10.70732 -10.50057 -9.72718 -9.06600 -8.31496 -6.45426 -0.06763 0.74068 1.09148 1.17853 1.31488 1.39209 1.41130 1.49928 1.67482 2.09029 2.35546 2.37110 2.61609 2.99873 3.02162 3.34059 3.68006 3.86365 3.98273 4.07169 4.24853 4.29934 4.34707 4.57201 4.57658 4.69928 4.71037 4.77363 4.91404 4.96547 5.02484 5.03288 5.05170 5.16745 5.29035 5.57573 5.68488 5.85006 5.96325 6.31115 6.59622 6.68367 7.10146 7.12302 7.24293 7.28519 8.75688 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.026934 B = 0.002116 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.312603 B =13229.539066 C =13586.005081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.179 3.821 3 N -0.326 5.326 4 N -0.294 5.294 5 C 0.154 3.846 6 C 0.269 3.731 7 H 0.125 0.875 8 C -0.154 4.154 9 N -0.720 5.720 10 C 0.725 3.275 11 O -0.586 6.586 12 N -0.635 5.635 13 C 0.284 3.716 14 C -0.289 4.289 15 C 0.056 3.944 16 N -0.345 5.345 17 C 0.273 3.727 18 C -0.547 4.547 19 H 0.052 0.948 20 C 0.018 3.982 21 N -0.920 5.920 22 Si 0.970 3.030 23 H -0.274 1.274 24 H -0.274 1.274 25 H -0.269 1.269 26 N -0.348 5.348 27 O -0.222 6.222 28 H 0.123 0.877 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.415 0.585 35 H 0.421 0.579 36 H 0.172 0.828 37 H 0.202 0.798 38 H 0.021 0.979 39 H 0.060 0.940 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.264 1.454 -15.448 30.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.031 4.031 3 N -0.173 5.173 4 N -0.140 5.140 5 C -0.059 4.059 6 C 0.162 3.838 7 H 0.143 0.857 8 C -0.213 4.213 9 N -0.379 5.379 10 C 0.425 3.575 11 O -0.463 6.463 12 N -0.286 5.286 13 C 0.029 3.971 14 C -0.320 4.320 15 C -0.092 4.092 16 N -0.127 5.127 17 C 0.154 3.846 18 C -0.586 4.586 19 H 0.071 0.929 20 C -0.182 4.182 21 N -0.559 5.559 22 Si 0.795 3.205 23 H -0.200 1.200 24 H -0.198 1.198 25 H -0.194 1.194 26 N -0.179 5.179 27 O -0.101 6.101 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.252 0.748 35 H 0.258 0.742 36 H 0.189 0.811 37 H 0.218 0.782 38 H 0.039 0.961 39 H 0.077 0.923 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.201 2.549 -14.813 29.343 hybrid contribution 0.213 -0.194 0.012 0.288 sum -24.988 2.355 -14.801 29.138 Atomic orbital electron populations 1.20786 0.76299 1.07461 1.07238 1.29183 0.99487 0.78507 0.95957 1.74392 0.96084 1.26835 1.20003 1.74270 1.13222 1.09602 1.16922 1.27904 0.85863 0.91404 1.00754 1.18946 0.78525 0.95244 0.91069 0.85718 1.22206 1.02380 1.04052 0.92673 1.44764 1.33205 1.13676 1.46242 1.15417 0.79120 0.84548 0.78455 1.90860 1.74267 1.15692 1.65462 1.41298 1.30899 1.13085 1.43293 1.19035 0.91387 0.91030 0.95698 1.21703 1.05274 0.93957 1.11113 1.23185 0.96152 0.95643 0.94216 1.48815 1.25215 1.04944 1.33698 1.19329 0.80297 0.98837 0.86161 1.21376 1.04254 1.19084 1.13837 0.92929 1.25731 0.99701 0.98338 0.94455 1.69980 1.28078 1.39898 1.17923 0.85419 0.77871 0.78872 0.78379 1.19950 1.19849 1.19437 1.77256 1.08687 1.10892 1.21100 1.84811 1.16919 1.38727 1.69604 0.85894 0.86704 0.86197 0.91120 0.90172 0.89043 0.74835 0.74226 0.81087 0.78150 0.96135 0.92252 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.17 10.51 71.24 0.75 0.58 16 2 C 0.18 2.58 8.48 88.34 0.75 3.33 16 3 N -0.33 -6.84 12.22 -165.50 -2.02 -8.86 16 4 N -0.29 -6.43 11.93 -165.50 -1.97 -8.41 16 5 C 0.15 2.83 7.27 88.34 0.64 3.47 16 6 C 0.27 4.59 3.12 44.24 0.14 4.72 16 7 H 0.13 2.13 7.58 -2.39 -0.02 2.11 16 8 C -0.15 -2.24 9.47 71.98 0.68 -1.56 16 9 N -0.72 -14.08 5.07 -461.40 -2.34 -16.42 16 10 C 0.73 19.54 8.50 179.05 1.52 21.06 16 11 O -0.59 -18.70 13.13 -4.01 -0.05 -18.75 16 12 N -0.63 -18.98 5.46 -321.23 -1.75 -20.73 16 13 C 0.28 11.18 8.11 133.32 1.08 12.26 16 14 C -0.29 -11.03 9.61 22.11 0.21 -10.82 16 15 C 0.06 2.19 11.44 83.52 0.96 3.14 16 16 N -0.34 -16.12 3.67 -351.85 -1.29 -17.41 16 17 C 0.27 14.14 6.26 85.63 0.54 14.67 16 18 C -0.55 -30.93 9.24 25.60 0.24 -30.69 16 19 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 20 C 0.02 1.01 5.46 84.66 0.46 1.47 16 21 N -0.92 -52.23 13.28 21.45 0.28 -51.95 16 22 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 N -0.35 -16.16 12.42 -54.44 -0.68 -16.83 16 27 O -0.22 -3.67 10.87 -3.62 -0.04 -3.71 16 28 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.41 7.07 8.37 -92.71 -0.78 6.30 16 35 H 0.42 10.40 8.84 -92.71 -0.82 9.58 16 36 H 0.17 6.19 5.91 -2.91 -0.02 6.18 16 37 H 0.20 6.10 8.06 -2.91 -0.02 6.07 16 38 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.06 3.00 8.07 -2.38 -0.02 2.98 16 40 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -74.69 356.30 -0.36 -75.05 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -0.48 Total: 20.59 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 7.96 Total: 21.64 kcal Atomic # 7 Polarization: -130.84 SS G_CDS: -9.77 Total: -140.61 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.09 Total: -22.46 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -74.69 -0.36 -75.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365767503.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.596 kcal (2) G-P(sol) polarization free energy of solvation -74.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds