Wall clock time and date at job start Tue Mar 31 2020 13:00:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53008 * 109.46940 * 2 1
4 4 H 1.08994 * 109.46950 * 305.00295 * 3 2 1
5 5 O 1.45206 * 109.46852 * 64.99822 * 3 2 1
6 6 C 1.34227 * 116.99818 * 270.00110 * 5 3 2
7 7 O 1.20818 * 120.00344 * 359.97438 * 6 5 3
8 8 C 1.50709 * 119.99730 * 180.02562 * 6 5 3
9 9 C 1.50693 * 109.47134 * 179.97438 * 8 6 5
10 10 C 1.37639 * 120.12498 * 265.00301 * 9 8 6
11 11 C 1.38623 * 120.24633 * 180.29879 * 10 9 8
12 12 C 1.38664 * 120.49621 * 359.44246 * 11 10 9
13 13 C 1.37593 * 120.24913 * 0.55252 * 12 11 10
14 14 C 1.40694 * 120.12921 * 85.02135 * 9 8 6
15 15 C 1.41403 * 120.24300 * 359.95717 * 14 9 8
16 16 H 1.08002 * 119.99828 * 329.89683 * 15 14 9
17 17 C 1.39939 * 119.99877 * 149.90591 * 15 14 9
18 18 N 1.30828 * 120.00032 * 162.00064 * 17 15 14
19 19 Si 1.86803 * 120.00100 * 341.99223 * 17 15 14
20 20 H 1.48499 * 109.47049 * 95.40110 * 19 17 15
21 21 H 1.48502 * 109.46957 * 215.39993 * 19 17 15
22 22 H 1.48500 * 109.46884 * 335.39700 * 19 17 15
23 23 C 1.52997 * 109.47279 * 184.99642 * 3 2 1
24 24 H 1.09001 * 109.47092 * 60.00076 * 23 3 2
25 25 C 1.52994 * 109.47262 * 179.97438 * 23 3 2
26 26 C 1.50704 * 109.47224 * 300.00380 * 23 3 2
27 27 O 1.20820 * 119.99759 * 359.97438 * 26 23 3
28 28 O 1.34224 * 119.99848 * 179.97438 * 26 23 3
29 29 H 1.08998 * 109.46420 * 179.97438 * 1 2 3
30 30 H 1.08996 * 109.47172 * 299.99882 * 1 2 3
31 31 H 1.08999 * 109.46764 * 60.00034 * 1 2 3
32 32 H 1.08997 * 109.47652 * 240.00327 * 2 1 3
33 33 H 1.08999 * 109.47260 * 119.99785 * 2 1 3
34 34 H 1.09005 * 109.46597 * 59.99648 * 8 6 5
35 35 H 1.08999 * 109.47007 * 300.00078 * 8 6 5
36 36 H 1.07994 * 119.87955 * 0.02562 * 10 9 8
37 37 H 1.07998 * 119.75000 * 179.69971 * 11 10 9
38 38 H 1.08001 * 119.86929 * 180.30289 * 12 11 10
39 39 H 1.08001 * 120.12452 * 179.74874 * 13 12 11
40 40 H 0.96997 * 119.99741 * 179.97438 * 18 17 15
41 41 H 1.09000 * 109.47405 * 60.00378 * 25 23 3
42 42 H 1.09000 * 109.47359 * 179.97438 * 25 23 3
43 43 H 1.08993 * 109.47364 * 300.00300 * 25 23 3
44 44 H 0.96703 * 117.00380 * 179.97438 * 28 26 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6053 1.9816 -0.8417
5 8 1.6558 2.0917 1.2408
6 6 0.4726 2.7254 1.2559
7 8 -0.2189 2.7377 0.2653
8 6 0.0072 3.4225 2.5084
9 6 -1.3404 4.0505 2.2627
10 6 -1.4288 5.3722 1.8889
11 6 -2.6675 5.9540 1.6681
12 6 -3.8294 5.2106 1.8095
13 6 -3.7648 3.8877 2.1823
14 6 -2.5131 3.2881 2.4147
15 6 -2.4344 1.9292 2.7978
16 1 -1.5742 1.3386 2.5194
17 6 -3.4714 1.3497 3.5376
18 7 -3.5860 0.0477 3.5945
19 14 -4.6919 2.4352 4.4441
20 1 -5.8961 2.6384 3.5993
21 1 -5.0854 1.7809 5.7178
22 1 -4.0642 3.7490 4.7358
23 6 3.5648 1.4445 -0.1256
24 1 3.8533 0.9572 -1.0570
25 6 4.0747 2.8870 -0.1263
26 6 4.1657 0.6992 1.0383
27 8 3.4480 0.2165 1.8819
28 8 5.4982 0.5717 1.1376
29 1 -0.3632 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8935 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 0.7244 4.1969 2.7810
35 1 -0.0713 2.6985 3.3194
36 1 -0.5301 5.9593 1.7714
37 1 -2.7278 6.9931 1.3798
38 1 -4.7889 5.6729 1.6303
39 1 -4.6713 3.3117 2.2958
40 1 -4.3045 -0.3539 4.1075
41 1 3.7863 3.3747 0.8049
42 1 5.1610 2.8884 -0.2153
43 1 3.6401 3.4256 -0.9683
44 1 5.8370 0.0856 1.9018
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001595348231.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:00:40
Heat of formation + Delta-G solvation = -171.885547 kcal
Electronic energy + Delta-G solvation = -28070.280495 eV
Core-core repulsion = 24145.044023 eV
Total energy + Delta-G solvation = -3925.236472 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.79726 -39.77502 -37.96424 -36.63520 -35.84610 -34.12951 -33.58904 -32.32713
-31.84021 -30.32821 -27.46145 -26.43458 -24.94642 -24.42368 -21.93908 -21.37777
-21.09722 -20.09779 -19.42671 -18.09341 -17.45104 -17.35765 -16.39195 -16.03987
-15.87558 -15.51670 -15.17101 -14.46810 -14.30916 -14.00649 -13.70856 -13.62524
-13.41770 -13.08567 -12.70284 -12.53818 -12.33881 -12.18283 -11.93898 -11.88479
-11.72008 -11.64241 -11.44573 -11.34541 -11.15203 -10.90034 -10.81761 -10.76033
-10.64498 -10.24799 -9.99939 -9.89446 -9.71210 -9.57212 -9.52833 -9.11835
-7.62065 -7.52340 -6.92484 -4.47819 2.20445 2.48807 2.71427 2.90427
3.02309 3.13179 3.18759 3.33611 3.34467 3.99816 4.35146 4.52546
4.66635 4.89163 5.19086 5.25424 5.31149 5.36418 5.49229 5.53019
5.62760 5.73093 5.86178 5.90739 5.95936 6.06184 6.08356 6.12405
6.18840 6.32159 6.34962 6.43913 6.57149 6.66443 6.71929 6.87916
6.95215 7.07594 7.20603 7.43911 7.65322 7.74473 7.88333 7.90523
8.13930 8.37169 8.54737 8.67571 8.82399 10.09214
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.016249 B = 0.004230 C = 0.003714
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1722.727212 B = 6618.556029 C = 7536.520190
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.152 4.152
3 C 0.102 3.898
4 H 0.096 0.904
5 O -0.347 6.347
6 C 0.460 3.540
7 O -0.489 6.489
8 C -0.046 4.046
9 C -0.178 4.178
10 C -0.064 4.064
11 C -0.244 4.244
12 C -0.077 4.077
13 C -0.233 4.233
14 C 0.111 3.889
15 C -0.443 4.443
16 H 0.091 0.909
17 C 0.086 3.914
18 N -0.804 5.804
19 Si 0.910 3.090
20 H -0.271 1.271
21 H -0.292 1.292
22 H -0.243 1.243
23 C -0.078 4.078
24 H 0.122 0.878
25 C -0.146 4.146
26 C 0.477 3.523
27 O -0.484 6.484
28 O -0.522 6.522
29 H 0.050 0.950
30 H 0.066 0.934
31 H 0.056 0.944
32 H 0.066 0.934
33 H 0.093 0.907
34 H 0.088 0.912
35 H 0.110 0.890
36 H 0.092 0.908
37 H 0.092 0.908
38 H 0.092 0.908
39 H 0.100 0.900
40 H 0.284 0.716
41 H 0.070 0.930
42 H 0.071 0.929
43 H 0.072 0.928
44 H 0.408 0.592
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.321 1.788 -4.728 15.187
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.189 4.189
3 C 0.047 3.953
4 H 0.113 0.887
5 O -0.265 6.265
6 C 0.303 3.697
7 O -0.375 6.375
8 C -0.083 4.083
9 C -0.180 4.180
10 C -0.083 4.083
11 C -0.263 4.263
12 C -0.095 4.095
13 C -0.252 4.252
14 C 0.108 3.892
15 C -0.471 4.471
16 H 0.108 0.892
17 C -0.134 4.134
18 N -0.428 5.428
19 Si 0.736 3.264
20 H -0.197 1.197
21 H -0.219 1.219
22 H -0.167 1.167
23 C -0.097 4.097
24 H 0.139 0.861
25 C -0.203 4.203
26 C 0.318 3.682
27 O -0.369 6.369
28 O -0.335 6.335
29 H 0.069 0.931
30 H 0.085 0.915
31 H 0.075 0.925
32 H 0.084 0.916
33 H 0.111 0.889
34 H 0.106 0.894
35 H 0.128 0.872
36 H 0.110 0.890
37 H 0.110 0.890
38 H 0.110 0.890
39 H 0.117 0.883
40 H 0.095 0.905
41 H 0.089 0.911
42 H 0.090 0.910
43 H 0.091 0.909
44 H 0.266 0.734
Dipole moment (debyes) X Y Z Total
from point charges 13.671 1.574 -5.073 14.667
hybrid contribution -0.507 -0.188 0.673 0.864
sum 13.163 1.385 -4.400 13.948
Atomic orbital electron populations
1.21787 0.93712 1.01522 1.03451 1.22236 0.98195 0.95015 1.03443
1.22502 0.90766 0.94610 0.87423 0.88655 1.86643 1.38227 1.63827
1.37809 1.24204 0.78358 0.75799 0.91351 1.90636 1.53945 1.57190
1.35720 1.19989 0.95462 0.99426 0.93449 1.19051 0.92205 0.93514
1.13189 1.20438 0.96110 0.94252 0.97466 1.20324 0.92662 0.98640
1.14720 1.20615 0.96617 0.94226 0.98090 1.20998 0.97082 0.95701
1.11406 1.17475 0.90415 0.92506 0.88823 1.19460 1.04961 0.93553
1.29171 0.89161 1.26158 0.96837 0.95130 0.95247 1.69709 1.29431
1.11593 1.32062 0.86344 0.80314 0.81728 0.77997 1.19750 1.21915
1.16655 1.21257 0.94234 0.97996 0.96187 0.86065 1.21769 1.01784
0.92858 1.03936 1.23282 0.79899 0.77800 0.87200 1.90755 1.61116
1.44444 1.40600 1.84511 1.24916 1.72410 1.51650 0.93072 0.91474
0.92491 0.91568 0.88870 0.89401 0.87192 0.89005 0.88954 0.88974
0.88269 0.90516 0.91130 0.91046 0.90947 0.73370
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.75 8.57 37.16 0.32 -2.43 16
2 C -0.15 -2.33 5.25 -26.73 -0.14 -2.47 16
3 C 0.10 1.50 1.87 -26.73 -0.05 1.45 16
4 H 0.10 1.41 7.15 -51.93 -0.37 1.04 16
5 O -0.35 -6.11 8.06 -45.46 -0.37 -6.48 16
6 C 0.46 9.21 6.03 36.01 0.22 9.43 16
7 O -0.49 -10.98 13.18 -18.74 -0.25 -11.23 16
8 C -0.05 -0.91 5.30 -29.03 -0.15 -1.06 16
9 C -0.18 -4.07 4.43 -103.92 -0.46 -4.53 16
10 C -0.06 -1.36 9.66 -39.66 -0.38 -1.75 16
11 C -0.24 -5.17 10.05 -39.28 -0.39 -5.57 16
12 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16
13 C -0.23 -5.74 7.17 -38.88 -0.28 -6.02 16
14 C 0.11 2.82 5.10 -106.82 -0.54 2.27 16
15 C -0.44 -11.88 8.56 -37.74 -0.32 -12.20 16
16 H 0.09 2.55 6.21 -52.49 -0.33 2.23 16
17 C 0.09 2.24 5.41 -17.34 -0.09 2.15 16
18 N -0.80 -21.51 13.93 55.55 0.77 -20.74 16
19 Si 0.91 20.90 24.52 -169.99 -4.17 16.73 16
20 H -0.27 -6.12 6.71 56.52 0.38 -5.74 16
21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16
22 H -0.24 -5.69 6.86 56.52 0.39 -5.30 16
23 C -0.08 -0.84 2.73 -91.77 -0.25 -1.09 16
24 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16
25 C -0.15 -1.38 8.98 37.15 0.33 -1.05 16
26 C 0.48 5.74 7.20 36.01 0.26 6.00 16
27 O -0.48 -7.66 13.73 -24.96 -0.34 -8.01 16
28 O -0.52 -4.60 13.33 -39.24 -0.52 -5.12 16
29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16
30 H 0.07 1.50 5.27 -51.93 -0.27 1.23 16
31 H 0.06 1.06 7.80 -51.93 -0.40 0.66 16
32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
33 H 0.09 1.58 5.65 -51.93 -0.29 1.28 16
34 H 0.09 1.44 8.05 -51.93 -0.42 1.02 16
35 H 0.11 2.26 7.13 -51.93 -0.37 1.89 16
36 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16
37 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16
38 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16
39 H 0.10 2.45 4.76 -52.49 -0.25 2.20 16
40 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16
41 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16
42 H 0.07 0.56 8.11 -51.93 -0.42 0.13 16
43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
44 H 0.41 2.04 9.10 45.56 0.41 2.46 16
LS Contribution 355.72 15.07 5.36 5.36
Total: -1.00 -31.88 355.72 -7.10 -38.98
By element:
Atomic # 1 Polarization: 14.74 SS G_CDS: -5.24 Total: 9.50 kcal
Atomic # 6 Polarization: -16.65 SS G_CDS: -2.34 Total: -18.99 kcal
Atomic # 7 Polarization: -21.51 SS G_CDS: 0.77 Total: -20.74 kcal
Atomic # 8 Polarization: -29.36 SS G_CDS: -1.48 Total: -30.84 kcal
Atomic # 14 Polarization: 20.90 SS G_CDS: -4.17 Total: 16.73 kcal
Total LS contribution 5.36 Total: 5.36 kcal
Total: -31.88 -7.10 -38.98 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001595348231.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -132.905 kcal
(2) G-P(sol) polarization free energy of solvation -31.882 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.787 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal
(6) G-S(sol) free energy of system = (1) + (5) -171.886 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds