Wall clock time and date at job start Tue Mar 31 2020 13:00:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53008 * 109.46940 * 2 1
4 4 H 1.08994 * 109.46950 * 305.00295 * 3 2 1
5 5 O 1.45206 * 109.46852 * 64.99822 * 3 2 1
6 6 C 1.34227 * 116.99818 * 270.00110 * 5 3 2
7 7 O 1.20818 * 120.00344 * 359.97438 * 6 5 3
8 8 C 1.50709 * 119.99730 * 180.02562 * 6 5 3
9 9 C 1.50693 * 109.47134 * 179.97438 * 8 6 5
10 10 C 1.37639 * 120.12498 * 265.00301 * 9 8 6
11 11 C 1.38623 * 120.24633 * 180.29879 * 10 9 8
12 12 C 1.38664 * 120.49621 * 359.44246 * 11 10 9
13 13 C 1.37593 * 120.24913 * 0.55252 * 12 11 10
14 14 C 1.40694 * 120.12921 * 85.02135 * 9 8 6
15 15 C 1.41403 * 120.24300 * 359.95717 * 14 9 8
16 16 H 1.08002 * 119.99828 * 329.89683 * 15 14 9
17 17 C 1.39939 * 119.99877 * 149.90591 * 15 14 9
18 18 N 1.30828 * 120.00032 * 162.00064 * 17 15 14
19 19 Si 1.86803 * 120.00100 * 341.99223 * 17 15 14
20 20 H 1.48499 * 109.47049 * 95.40110 * 19 17 15
21 21 H 1.48502 * 109.46957 * 215.39993 * 19 17 15
22 22 H 1.48500 * 109.46884 * 335.39700 * 19 17 15
23 23 C 1.52997 * 109.47279 * 184.99642 * 3 2 1
24 24 H 1.09001 * 109.47092 * 60.00076 * 23 3 2
25 25 C 1.52994 * 109.47262 * 179.97438 * 23 3 2
26 26 C 1.50704 * 109.47224 * 300.00380 * 23 3 2
27 27 O 1.20820 * 119.99759 * 359.97438 * 26 23 3
28 28 O 1.34224 * 119.99848 * 179.97438 * 26 23 3
29 29 H 1.08998 * 109.46420 * 179.97438 * 1 2 3
30 30 H 1.08996 * 109.47172 * 299.99882 * 1 2 3
31 31 H 1.08999 * 109.46764 * 60.00034 * 1 2 3
32 32 H 1.08997 * 109.47652 * 240.00327 * 2 1 3
33 33 H 1.08999 * 109.47260 * 119.99785 * 2 1 3
34 34 H 1.09005 * 109.46597 * 59.99648 * 8 6 5
35 35 H 1.08999 * 109.47007 * 300.00078 * 8 6 5
36 36 H 1.07994 * 119.87955 * 0.02562 * 10 9 8
37 37 H 1.07998 * 119.75000 * 179.69971 * 11 10 9
38 38 H 1.08001 * 119.86929 * 180.30289 * 12 11 10
39 39 H 1.08001 * 120.12452 * 179.74874 * 13 12 11
40 40 H 0.96997 * 119.99741 * 179.97438 * 18 17 15
41 41 H 1.09000 * 109.47405 * 60.00378 * 25 23 3
42 42 H 1.09000 * 109.47359 * 179.97438 * 25 23 3
43 43 H 1.08993 * 109.47364 * 300.00300 * 25 23 3
44 44 H 0.96703 * 117.00380 * 179.97438 * 28 26 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6053 1.9816 -0.8417
5 8 1.6558 2.0917 1.2408
6 6 0.4726 2.7254 1.2559
7 8 -0.2189 2.7377 0.2653
8 6 0.0072 3.4225 2.5084
9 6 -1.3404 4.0505 2.2627
10 6 -1.4288 5.3722 1.8889
11 6 -2.6675 5.9540 1.6681
12 6 -3.8294 5.2106 1.8095
13 6 -3.7648 3.8877 2.1823
14 6 -2.5131 3.2881 2.4147
15 6 -2.4344 1.9292 2.7978
16 1 -1.5742 1.3386 2.5194
17 6 -3.4714 1.3497 3.5376
18 7 -3.5860 0.0477 3.5945
19 14 -4.6919 2.4352 4.4441
20 1 -5.8961 2.6384 3.5993
21 1 -5.0854 1.7809 5.7178
22 1 -4.0642 3.7490 4.7358
23 6 3.5648 1.4445 -0.1256
24 1 3.8533 0.9572 -1.0570
25 6 4.0747 2.8870 -0.1263
26 6 4.1657 0.6992 1.0383
27 8 3.4480 0.2165 1.8819
28 8 5.4982 0.5717 1.1376
29 1 -0.3632 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8935 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 0.7244 4.1969 2.7810
35 1 -0.0713 2.6985 3.3194
36 1 -0.5301 5.9593 1.7714
37 1 -2.7278 6.9931 1.3798
38 1 -4.7889 5.6729 1.6303
39 1 -4.6713 3.3117 2.2958
40 1 -4.3045 -0.3539 4.1075
41 1 3.7863 3.3747 0.8049
42 1 5.1610 2.8884 -0.2153
43 1 3.6401 3.4256 -0.9683
44 1 5.8370 0.0856 1.9018
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001595348231.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:00:39
Heat of formation + Delta-G solvation = -190.991942 kcal
Electronic energy + Delta-G solvation = -28071.109010 eV
Core-core repulsion = 24145.044023 eV
Total energy + Delta-G solvation = -3926.064987 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.98530 -41.04070 -39.65717 -37.89978 -36.90739 -35.50115 -35.35422 -33.65325
-33.38547 -32.17846 -29.08515 -27.67423 -26.71525 -25.44704 -23.50504 -23.05956
-22.38288 -21.24281 -21.05122 -19.26972 -19.13267 -18.67679 -17.74371 -17.63128
-17.21526 -16.73812 -16.46247 -16.14656 -15.88135 -15.49937 -15.27522 -14.96868
-14.53697 -14.42345 -14.32973 -13.90101 -13.78762 -13.73644 -13.33524 -13.17151
-13.14420 -12.90348 -12.78463 -12.70258 -12.62053 -12.52261 -12.46102 -12.13491
-12.00514 -11.83981 -11.55000 -11.41020 -11.32800 -11.19044 -10.98084 -10.97395
-9.41114 -9.34097 -8.87109 -6.46549 0.73620 0.89711 1.25900 1.29436
1.38129 1.44650 1.48560 1.91333 2.12209 2.13281 2.64544 3.31683
3.53405 3.69028 3.94007 4.05475 4.13954 4.17244 4.23424 4.24829
4.35324 4.44490 4.50950 4.54845 4.64083 4.70173 4.76398 4.86400
4.90338 4.91318 4.92211 4.95471 5.14777 5.15458 5.27026 5.29334
5.37826 5.57350 5.68686 5.76063 5.86121 5.94548 6.04820 6.28660
6.45383 6.78233 6.88628 7.01642 7.08412 8.20768
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.016249 B = 0.004230 C = 0.003714
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1722.727212 B = 6618.556029 C = 7536.520190
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.146 4.146
3 C 0.095 3.905
4 H 0.096 0.904
5 O -0.348 6.348
6 C 0.466 3.534
7 O -0.520 6.520
8 C -0.049 4.049
9 C -0.182 4.182
10 C -0.071 4.071
11 C -0.229 4.229
12 C -0.086 4.086
13 C -0.255 4.255
14 C 0.087 3.913
15 C -0.470 4.470
16 H 0.055 0.945
17 C 0.047 3.953
18 N -0.850 5.850
19 Si 0.964 3.036
20 H -0.265 1.265
21 H -0.279 1.279
22 H -0.249 1.249
23 C -0.073 4.073
24 H 0.161 0.839
25 C -0.143 4.143
26 C 0.483 3.517
27 O -0.532 6.532
28 O -0.509 6.509
29 H 0.051 0.949
30 H 0.021 0.979
31 H 0.052 0.948
32 H 0.105 0.895
33 H 0.078 0.922
34 H 0.127 0.873
35 H 0.093 0.907
36 H 0.130 0.870
37 H 0.131 0.869
38 H 0.123 0.877
39 H 0.091 0.909
40 H 0.291 0.709
41 H 0.051 0.949
42 H 0.093 0.907
43 H 0.083 0.917
44 H 0.426 0.574
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.153 4.458 -5.942 17.780
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.183 4.183
3 C 0.040 3.960
4 H 0.114 0.886
5 O -0.265 6.265
6 C 0.310 3.690
7 O -0.409 6.409
8 C -0.086 4.086
9 C -0.183 4.183
10 C -0.089 4.089
11 C -0.247 4.247
12 C -0.105 4.105
13 C -0.274 4.274
14 C 0.084 3.916
15 C -0.499 4.499
16 H 0.073 0.927
17 C -0.167 4.167
18 N -0.477 5.477
19 Si 0.788 3.212
20 H -0.191 1.191
21 H -0.206 1.206
22 H -0.173 1.173
23 C -0.092 4.092
24 H 0.179 0.821
25 C -0.200 4.200
26 C 0.325 3.675
27 O -0.421 6.421
28 O -0.323 6.323
29 H 0.070 0.930
30 H 0.040 0.960
31 H 0.071 0.929
32 H 0.123 0.877
33 H 0.096 0.904
34 H 0.145 0.855
35 H 0.111 0.889
36 H 0.148 0.852
37 H 0.149 0.851
38 H 0.141 0.859
39 H 0.109 0.891
40 H 0.101 0.899
41 H 0.070 0.930
42 H 0.112 0.888
43 H 0.102 0.898
44 H 0.287 0.713
Dipole moment (debyes) X Y Z Total
from point charges 15.553 4.244 -6.283 17.302
hybrid contribution -0.899 -0.888 0.929 1.568
sum 14.654 3.356 -5.354 15.958
Atomic orbital electron populations
1.21693 0.96590 1.00720 1.00882 1.22216 0.95336 0.96174 1.04566
1.22810 0.93708 0.93491 0.85962 0.88622 1.86622 1.36809 1.63411
1.39673 1.24056 0.78664 0.75491 0.90754 1.90608 1.54864 1.58558
1.36829 1.20024 0.95417 1.00149 0.93056 1.19427 0.92576 0.94436
1.11892 1.20900 0.97977 0.93666 0.96344 1.20881 0.92016 1.00258
1.11582 1.21011 0.98797 0.93340 0.97304 1.21132 0.96501 0.97133
1.12670 1.17693 0.92030 0.92230 0.89608 1.19368 1.04650 0.94535
1.31395 0.92659 1.26813 0.98202 0.96060 0.95616 1.69754 1.31017
1.12807 1.34107 0.85514 0.78491 0.79820 0.77396 1.19070 1.20621
1.17282 1.21342 0.90960 0.99437 0.97425 0.82148 1.21777 1.03244
0.91493 1.03456 1.23481 0.80479 0.76796 0.86701 1.90764 1.62341
1.46612 1.42385 1.84460 1.23024 1.72224 1.52557 0.93009 0.96012
0.92937 0.87677 0.90380 0.85484 0.88934 0.85233 0.85097 0.85912
0.89110 0.89891 0.92971 0.88777 0.89831 0.71303
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.58 8.57 71.98 0.62 -4.96 16
2 C -0.15 -4.48 5.25 30.60 0.16 -4.32 16
3 C 0.10 2.71 1.87 30.60 0.06 2.77 16
4 H 0.10 2.75 7.15 -2.39 -0.02 2.73 16
5 O -0.35 -12.42 8.06 -45.44 -0.37 -12.78 16
6 C 0.47 19.11 6.03 71.24 0.43 19.54 16
7 O -0.52 -24.01 13.18 21.99 0.29 -23.72 16
8 C -0.05 -1.98 5.30 29.10 0.15 -1.83 16
9 C -0.18 -8.26 4.43 -19.41 -0.09 -8.35 16
10 C -0.07 -2.79 9.66 22.22 0.21 -2.58 16
11 C -0.23 -8.77 10.05 22.46 0.23 -8.55 16
12 C -0.09 -3.64 10.02 22.22 0.22 -3.41 16
13 C -0.26 -12.58 7.17 22.73 0.16 -12.42 16
14 C 0.09 4.53 5.10 -21.29 -0.11 4.42 16
15 C -0.47 -26.87 8.56 23.46 0.20 -26.67 16
16 H 0.06 3.44 6.21 -2.91 -0.02 3.43 16
17 C 0.05 2.62 5.41 85.25 0.46 3.08 16
18 N -0.85 -48.44 13.93 21.83 0.30 -48.13 16
19 Si 0.96 44.41 24.52 68.60 1.68 46.09 16
20 H -0.26 -11.76 6.71 99.48 0.67 -11.09 16
21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16
22 H -0.25 -11.55 6.86 99.48 0.68 -10.87 16
23 C -0.07 -1.39 2.73 -11.54 -0.03 -1.42 16
24 H 0.16 1.84 8.14 -2.39 -0.02 1.82 16
25 C -0.14 -2.26 8.98 71.98 0.65 -1.61 16
26 C 0.48 10.72 7.20 71.24 0.51 11.24 16
27 O -0.53 -16.84 13.73 27.92 0.38 -16.46 16
28 O -0.51 -7.53 13.33 -51.36 -0.68 -8.22 16
29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16
30 H 0.02 1.03 5.27 -2.39 -0.01 1.02 16
31 H 0.05 2.05 7.80 -2.39 -0.02 2.03 16
32 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16
33 H 0.08 2.71 5.65 -2.39 -0.01 2.69 16
34 H 0.13 3.97 8.05 -2.38 -0.02 3.95 16
35 H 0.09 4.05 7.13 -2.39 -0.02 4.04 16
36 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16
37 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16
38 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16
39 H 0.09 4.54 4.76 -2.91 -0.01 4.52 16
40 H 0.29 14.97 8.30 -92.71 -0.77 14.20 16
41 H 0.05 1.03 7.68 -2.39 -0.02 1.01 16
42 H 0.09 1.09 8.11 -2.39 -0.02 1.07 16
43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16
44 H 0.43 3.25 9.10 -74.06 -0.67 2.57 16
Total: -1.00 -74.46 355.72 5.75 -68.71
By element:
Atomic # 1 Polarization: 29.28 SS G_CDS: 0.30 Total: 29.57 kcal
Atomic # 6 Polarization: -38.92 SS G_CDS: 3.84 Total: -35.08 kcal
Atomic # 7 Polarization: -48.44 SS G_CDS: 0.30 Total: -48.13 kcal
Atomic # 8 Polarization: -60.79 SS G_CDS: -0.38 Total: -61.17 kcal
Atomic # 14 Polarization: 44.41 SS G_CDS: 1.68 Total: 46.09 kcal
Total: -74.46 5.75 -68.71 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001595348231.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -122.280 kcal
(2) G-P(sol) polarization free energy of solvation -74.458 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.738 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.712 kcal
(6) G-S(sol) free energy of system = (1) + (5) -190.992 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds