Wall clock time and date at job start Tue Mar 31 2020 12:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46969 * 2 1 4 4 C 1.53004 * 109.47252 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46923 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46923 * 180.02562 * 5 4 3 7 7 H 1.09007 * 109.46794 * 54.99806 * 6 5 4 8 8 O 1.45203 * 109.47064 * 294.99952 * 6 5 4 9 9 C 1.34705 * 116.99638 * 149.99691 * 8 6 5 10 10 O 1.21463 * 120.00530 * 0.02562 * 9 8 6 11 11 C 1.47771 * 119.99572 * 180.02562 * 9 8 6 12 12 C 1.39969 * 120.03389 * 359.72556 * 11 9 8 13 13 C 1.38315 * 120.35754 * 179.76628 * 12 11 9 14 14 C 1.37761 * 120.41212 * 0.51349 * 13 12 11 15 15 C 1.40745 * 120.05407 * 359.74339 * 14 13 12 16 16 C 1.41444 * 120.17696 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00335 * 150.18077 * 16 15 14 18 18 C 1.39937 * 119.99661 * 330.17277 * 16 15 14 19 19 N 1.30832 * 119.99734 * 161.73179 * 18 16 15 20 20 Si 1.86796 * 120.00247 * 341.73460 * 18 16 15 21 21 H 1.48506 * 109.47181 * 95.40923 * 20 18 16 22 22 H 1.48498 * 109.47327 * 215.40877 * 20 18 16 23 23 H 1.48499 * 109.47214 * 335.41179 * 20 18 16 24 24 C 1.39044 * 120.02940 * 180.02562 * 11 9 8 25 25 C 1.50689 * 109.47228 * 174.99962 * 6 5 4 26 26 O 1.20831 * 120.00363 * 115.00115 * 25 6 5 27 27 O 1.34235 * 120.00335 * 294.99980 * 25 6 5 28 28 H 1.09007 * 109.46983 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47430 * 299.99434 * 1 2 3 30 30 H 1.09004 * 109.47302 * 60.00192 * 1 2 3 31 31 H 1.09008 * 109.47379 * 240.00624 * 2 1 3 32 32 H 1.08994 * 109.47290 * 120.00041 * 2 1 3 33 33 H 1.09002 * 109.47164 * 59.99821 * 3 2 1 34 34 H 1.09004 * 109.46952 * 300.00023 * 3 2 1 35 35 H 1.08994 * 109.46989 * 60.00033 * 4 3 2 36 36 H 1.08994 * 109.47093 * 300.00094 * 4 3 2 37 37 H 1.08994 * 109.47354 * 60.00143 * 5 4 3 38 38 H 1.09004 * 109.47024 * 299.99798 * 5 4 3 39 39 H 1.08007 * 119.81943 * 0.02562 * 12 11 9 40 40 H 1.07997 * 119.79056 * 180.25984 * 13 12 11 41 41 H 1.08007 * 119.97237 * 179.76774 * 14 13 12 42 42 H 0.96998 * 120.00001 * 180.02562 * 19 18 16 43 43 H 1.08007 * 120.20839 * 359.95984 * 24 11 9 44 44 H 0.96693 * 117.00364 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8852 0.0000 6 6 5.6099 2.8852 -0.0013 7 1 5.9725 2.2964 -0.8439 8 8 6.0950 2.3058 1.2386 9 6 7.2788 1.6647 1.1920 10 8 7.8893 1.5921 0.1445 11 6 7.8346 1.0498 2.4153 12 6 7.1343 1.1379 3.6240 13 6 7.6460 0.5606 4.7721 14 6 8.8553 -0.0985 4.7418 15 6 9.5766 -0.1930 3.5369 16 6 10.8182 -0.8697 3.5027 17 1 11.1397 -1.3630 2.5974 18 6 11.6302 -0.8998 4.6421 19 7 12.5799 -1.7938 4.7450 20 14 11.3579 0.3361 6.0160 21 1 10.4928 -0.2679 7.0610 22 1 12.6658 0.7102 6.6116 23 1 10.6988 1.5486 5.4677 24 6 9.0567 0.3883 2.3681 25 6 6.1120 4.3007 -0.1245 26 8 6.7311 4.8033 0.7833 27 8 5.8716 5.0032 -1.2427 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9289 -0.8908 36 1 3.9337 0.9287 0.8891 37 1 3.7169 3.3984 0.8904 38 1 3.7161 3.3995 -0.8896 39 1 6.1873 1.6560 3.6595 40 1 7.0960 0.6306 5.6988 41 1 9.2500 -0.5435 5.6433 42 1 13.1425 -1.8149 5.5349 43 1 9.6028 0.3212 1.4386 44 1 6.2133 5.9072 -1.2753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595691030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:05 Heat of formation + Delta-G solvation = -187.263034 kcal Electronic energy + Delta-G solvation = -26428.678197 eV Core-core repulsion = 22502.774907 eV Total energy + Delta-G solvation = -3925.903290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.93200 -39.67116 -37.80461 -36.86652 -36.33307 -35.77109 -33.76044 -33.18458 -30.84922 -30.19106 -29.34446 -25.60219 -25.30601 -23.91809 -22.24873 -21.34671 -21.18810 -20.73602 -20.35795 -18.45554 -18.03023 -17.30618 -16.84861 -16.22596 -15.93305 -15.85728 -15.28602 -14.92269 -14.71371 -14.29298 -14.12877 -13.86685 -13.75987 -13.36518 -13.07329 -12.83892 -12.81086 -12.58855 -12.13546 -11.99509 -11.82317 -11.72063 -11.64655 -11.42965 -11.19979 -11.13249 -11.11567 -11.00251 -10.85173 -10.70723 -10.63299 -10.26984 -10.14818 -9.93435 -9.72454 -9.28019 -8.01117 -7.82873 -7.04019 -4.59690 1.58506 1.99342 2.39065 2.46981 3.00420 3.04098 3.15822 3.22439 3.34397 3.90394 4.28321 4.40145 4.55584 4.66563 4.79465 4.91653 4.92562 4.98452 5.20239 5.23950 5.25773 5.41305 5.45098 5.53980 5.62296 5.67524 5.79292 5.85601 5.86847 5.98977 6.10189 6.11120 6.18415 6.24004 6.28467 6.51424 6.58355 6.59753 6.89908 7.12840 7.34258 7.43575 7.66982 7.67431 7.83543 8.14420 8.22917 8.45480 8.66100 9.98054 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.003150 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.848872 B = 8888.006253 C =10097.852535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.124 4.124 5 C -0.107 4.107 6 C 0.099 3.901 7 H 0.122 0.878 8 O -0.320 6.320 9 C 0.515 3.485 10 O -0.516 6.516 11 C -0.095 4.095 12 C -0.189 4.189 13 C -0.089 4.089 14 C -0.211 4.211 15 C 0.079 3.921 16 C -0.443 4.443 17 H 0.094 0.906 18 C 0.084 3.916 19 N -0.802 5.802 20 Si 0.908 3.092 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.243 1.243 24 C -0.132 4.132 25 C 0.463 3.537 26 O -0.493 6.493 27 O -0.513 6.513 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.287 0.713 43 H 0.117 0.883 44 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.673 7.761 -7.839 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.161 4.161 5 C -0.144 4.144 6 C 0.041 3.959 7 H 0.140 0.860 8 O -0.237 6.237 9 C 0.363 3.637 10 O -0.405 6.405 11 C -0.096 4.096 12 C -0.208 4.208 13 C -0.107 4.107 14 C -0.230 4.230 15 C 0.076 3.924 16 C -0.471 4.471 17 H 0.112 0.888 18 C -0.136 4.136 19 N -0.426 5.426 20 Si 0.733 3.267 21 H -0.194 1.194 22 H -0.215 1.215 23 H -0.166 1.166 24 C -0.151 4.151 25 C 0.304 3.696 26 O -0.379 6.379 27 O -0.326 6.326 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.098 0.902 43 H 0.135 0.865 44 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -18.229 7.336 -7.798 21.140 hybrid contribution 0.455 1.133 0.539 1.334 sum -17.774 8.469 -7.259 20.984 Atomic orbital electron populations 1.21775 0.96019 1.01544 1.01648 1.21544 0.95690 0.96883 1.02382 1.21589 0.94772 0.97020 1.02101 1.21637 0.95770 0.95202 1.03495 1.21702 0.88728 0.99647 1.04365 1.22058 0.96353 0.87867 0.89585 0.86008 1.86809 1.37623 1.64770 1.34537 1.21990 0.77748 0.74195 0.89791 1.90765 1.59227 1.58166 1.32367 1.18684 0.97088 1.03883 0.89915 1.20614 1.01057 1.07089 0.92047 1.20586 0.95805 0.97513 0.96778 1.21285 0.96352 1.06806 0.98566 1.17632 0.93597 0.90520 0.90657 1.19480 1.00599 1.27594 0.99421 0.88763 1.26151 0.93848 0.94846 0.98712 1.69684 1.15769 1.28287 1.28856 0.86356 0.77423 0.82775 0.80097 1.19395 1.21507 1.16592 1.21278 0.94539 0.99885 0.99428 1.23784 0.76935 0.89335 0.79574 1.90789 1.36773 1.70427 1.39880 1.84483 1.74904 1.31982 1.41202 0.92849 0.92782 0.92909 0.91981 0.91710 0.91782 0.91993 0.91467 0.90509 0.89940 0.88693 0.87173 0.87833 0.87596 0.90245 0.86461 0.72876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.12 -0.89 5.21 -26.73 -0.14 -1.03 16 4 C -0.12 -1.13 5.11 -26.73 -0.14 -1.27 16 5 C -0.11 -1.01 4.91 -26.73 -0.13 -1.14 16 6 C 0.10 1.32 2.47 -27.89 -0.07 1.25 16 7 H 0.12 1.60 7.16 -51.93 -0.37 1.23 16 8 O -0.32 -5.46 8.20 -47.18 -0.39 -5.84 16 9 C 0.52 10.48 7.86 34.63 0.27 10.75 16 10 O -0.52 -11.18 15.59 -19.24 -0.30 -11.48 16 11 C -0.09 -2.08 5.87 -105.05 -0.62 -2.70 16 12 C -0.19 -3.86 9.62 -38.91 -0.37 -4.24 16 13 C -0.09 -1.83 10.01 -39.73 -0.40 -2.23 16 14 C -0.21 -4.89 7.17 -38.81 -0.28 -5.17 16 15 C 0.08 1.97 5.10 -106.87 -0.55 1.43 16 16 C -0.44 -11.77 9.57 -37.73 -0.36 -12.13 16 17 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 18 C 0.08 2.16 5.40 -17.34 -0.09 2.06 16 19 N -0.80 -20.96 13.93 55.55 0.77 -20.19 16 20 Si 0.91 20.27 24.52 -169.99 -4.17 16.10 16 21 H -0.27 -5.71 6.71 56.52 0.38 -5.33 16 22 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.24 -5.61 6.86 56.52 0.39 -5.22 16 24 C -0.13 -3.16 9.34 -38.42 -0.36 -3.51 16 25 C 0.46 6.45 7.63 36.00 0.27 6.73 16 26 O -0.49 -8.86 17.27 -25.40 -0.44 -9.30 16 27 O -0.51 -5.00 13.39 -39.27 -0.53 -5.52 16 28 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.83 7.82 -51.93 -0.41 0.43 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.70 8.12 -51.93 -0.42 0.27 16 39 H 0.11 2.00 7.59 -52.48 -0.40 1.60 16 40 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.11 2.42 4.72 -52.48 -0.25 2.17 16 42 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 43 H 0.12 2.80 7.64 -52.48 -0.40 2.40 16 44 H 0.41 2.27 9.10 45.56 0.41 2.69 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -30.86 374.53 -7.80 -38.66 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.65 Total: 4.93 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -2.74 Total: -13.00 kcal Atomic # 7 Polarization: -20.96 SS G_CDS: 0.77 Total: -20.19 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -1.65 Total: -32.14 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.17 Total: 16.10 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.86 -7.80 -38.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595691030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.601 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds