Wall clock time and date at job start Tue Mar 31 2020 12:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47470 * 2 1 4 4 C 1.52995 * 109.47446 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47010 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.46997 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.46788 * 305.00426 * 6 5 4 8 8 O 1.45198 * 109.47007 * 65.00305 * 6 5 4 9 9 C 1.34708 * 116.99791 * 210.00119 * 8 6 5 10 10 O 1.21466 * 120.00187 * 0.02562 * 9 8 6 11 11 C 1.47765 * 119.99713 * 180.27433 * 9 8 6 12 12 C 1.39965 * 120.03604 * 359.45187 * 11 9 8 13 13 C 1.38315 * 120.35972 * 179.69199 * 12 11 9 14 14 C 1.37766 * 120.41410 * 0.60488 * 13 12 11 15 15 C 1.40755 * 120.04626 * 359.67660 * 14 13 12 16 16 C 1.41448 * 120.16995 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99880 * 334.92126 * 16 15 14 18 18 C 1.39929 * 119.99795 * 154.92327 * 16 15 14 19 19 N 1.30827 * 120.00464 * 342.58637 * 18 16 15 20 20 Si 1.86803 * 119.99986 * 162.58614 * 18 16 15 21 21 H 1.48497 * 109.47259 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47086 * 119.99834 * 20 18 16 23 23 H 1.48506 * 109.46855 * 239.99789 * 20 18 16 24 24 C 1.39055 * 120.03087 * 179.72167 * 11 9 8 25 25 C 1.50697 * 109.47006 * 185.00392 * 6 5 4 26 26 O 1.20826 * 119.99864 * 244.99769 * 25 6 5 27 27 O 1.34231 * 120.00286 * 65.00275 * 25 6 5 28 28 H 1.09001 * 109.47660 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47235 * 300.00162 * 1 2 3 30 30 H 1.09001 * 109.47421 * 60.00258 * 1 2 3 31 31 H 1.09003 * 109.47447 * 239.99562 * 2 1 3 32 32 H 1.09003 * 109.46984 * 120.00020 * 2 1 3 33 33 H 1.09003 * 109.47143 * 59.99376 * 3 2 1 34 34 H 1.09003 * 109.47034 * 299.99990 * 3 2 1 35 35 H 1.09009 * 109.46857 * 60.00052 * 4 3 2 36 36 H 1.09003 * 109.47303 * 300.00201 * 4 3 2 37 37 H 1.09002 * 109.46928 * 60.00772 * 5 4 3 38 38 H 1.08991 * 109.47468 * 299.99996 * 5 4 3 39 39 H 1.08001 * 119.82036 * 359.97438 * 12 11 9 40 40 H 1.08001 * 119.79634 * 180.29560 * 13 12 11 41 41 H 1.07998 * 119.97301 * 179.69457 * 14 13 12 42 42 H 0.96995 * 120.00312 * 180.02562 * 19 18 16 43 43 H 1.07998 * 120.20083 * 359.97438 * 24 11 9 44 44 H 0.96699 * 116.99869 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0799 2.8849 0.0000 6 6 5.6100 2.8849 0.0000 7 1 5.9733 2.2957 0.8421 8 8 6.0940 2.3059 -1.2405 9 6 7.2778 1.6647 -1.1951 10 8 7.8888 1.5909 -0.1479 11 6 7.8357 1.0559 -2.4205 12 6 7.1293 1.1350 -3.6262 13 6 7.6481 0.5731 -4.7786 14 6 8.8600 -0.0817 -4.7508 15 6 9.5822 -0.1766 -3.5464 16 6 10.8269 -0.8478 -3.5149 17 1 11.0471 -1.6117 -4.2460 18 6 11.7729 -0.5221 -2.5366 19 7 11.6705 0.6027 -1.8764 20 14 13.1819 -1.6934 -2.1732 21 1 13.0718 -2.8872 -3.0495 22 1 14.4740 -1.0080 -2.4297 23 1 13.1197 -2.1164 -0.7510 24 6 9.0604 0.3989 -2.3757 25 6 6.1123 4.3003 0.1233 26 8 6.7307 4.8032 -0.7848 27 8 5.8729 5.0025 1.2420 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9336 0.9284 -0.8892 36 1 3.9329 0.9287 0.8909 37 1 3.7163 3.3992 0.8896 38 1 3.7170 3.3982 -0.8903 39 1 6.1760 1.6416 -3.6579 40 1 7.0976 0.6436 -5.7051 41 1 9.2561 -0.5222 -5.6538 42 1 12.3264 0.8287 -1.1985 43 1 9.6073 0.3319 -1.4468 44 1 6.2147 5.9065 1.2745 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595691032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:08 Heat of formation + Delta-G solvation = -188.981508 kcal Electronic energy + Delta-G solvation = -26593.648120 eV Core-core repulsion = 22667.670312 eV Total energy + Delta-G solvation = -3925.977808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76263 -39.47353 -37.52557 -36.70354 -36.19960 -35.60299 -33.78561 -33.08023 -30.44277 -29.55640 -29.20340 -25.52307 -25.32512 -23.61520 -22.12276 -21.17806 -21.09825 -20.87711 -19.90451 -18.29138 -17.90339 -17.13532 -16.61242 -16.05281 -15.84586 -15.59665 -14.99038 -14.72370 -14.67667 -14.19432 -14.05158 -13.77263 -13.39176 -13.30612 -12.95641 -12.75059 -12.62644 -12.45799 -11.93493 -11.76529 -11.68191 -11.53056 -11.36002 -11.17862 -11.12813 -11.11259 -11.03691 -10.90864 -10.77318 -10.63492 -10.53333 -10.29591 -10.07294 -9.74649 -9.56370 -9.26846 -7.77719 -7.57443 -6.83951 -4.45599 1.88442 2.12981 2.55833 2.75462 3.05885 3.09726 3.11919 3.22136 3.56892 3.89178 4.38570 4.55402 4.66174 4.74047 4.89231 4.98710 5.03337 5.09842 5.32266 5.34474 5.49376 5.51614 5.60153 5.61736 5.69423 5.74079 5.87524 5.90745 6.05191 6.09913 6.17446 6.25710 6.38183 6.39244 6.54514 6.79398 6.91118 6.93961 7.14748 7.27943 7.64925 7.71345 7.80694 7.88297 8.07507 8.40272 8.42927 8.74816 8.76804 10.11472 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.003283 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.132249 B = 8527.942644 C = 9518.715998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.123 4.123 5 C -0.106 4.106 6 C 0.099 3.901 7 H 0.121 0.879 8 O -0.323 6.323 9 C 0.515 3.485 10 O -0.515 6.515 11 C -0.113 4.113 12 C -0.190 4.190 13 C -0.103 4.103 14 C -0.199 4.199 15 C 0.095 3.905 16 C -0.459 4.459 17 H 0.083 0.917 18 C 0.072 3.928 19 N -0.787 5.787 20 Si 0.911 3.089 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.271 1.271 24 C -0.087 4.087 25 C 0.463 3.537 26 O -0.492 6.492 27 O -0.514 6.514 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.284 0.716 43 H 0.135 0.865 44 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.889 3.057 6.185 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.161 4.161 5 C -0.144 4.144 6 C 0.041 3.959 7 H 0.138 0.862 8 O -0.240 6.240 9 C 0.362 3.638 10 O -0.404 6.404 11 C -0.114 4.114 12 C -0.210 4.210 13 C -0.122 4.122 14 C -0.219 4.219 15 C 0.093 3.907 16 C -0.489 4.489 17 H 0.101 0.899 18 C -0.146 4.146 19 N -0.412 5.412 20 Si 0.735 3.265 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.196 1.196 24 C -0.106 4.106 25 C 0.303 3.697 26 O -0.377 6.377 27 O -0.327 6.327 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.153 0.847 44 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -15.562 2.935 6.413 17.085 hybrid contribution 1.095 0.423 0.358 1.227 sum -14.467 3.358 6.771 16.322 Atomic orbital electron populations 1.21773 0.96056 1.01496 1.01638 1.21543 0.95641 0.96938 1.02371 1.21586 0.94850 0.96958 1.02066 1.21634 0.95660 0.95301 1.03496 1.21687 0.88912 0.99540 1.04241 1.22016 0.96211 0.87817 0.89839 0.86166 1.86815 1.37941 1.64957 1.34277 1.22064 0.77504 0.74235 0.89974 1.90763 1.59031 1.58150 1.32472 1.18755 0.97590 1.05350 0.89751 1.20566 1.00537 1.07447 0.92459 1.20512 0.96160 0.99103 0.96383 1.21203 0.97404 1.06220 0.97079 1.17540 0.92721 0.90551 0.89905 1.19594 0.98244 1.18663 1.12351 0.89860 1.25973 0.99507 0.94732 0.94421 1.69788 1.33719 1.19199 1.18445 0.86217 0.79968 0.81026 0.79310 1.18281 1.19901 1.19573 1.21651 0.91715 0.97339 0.99929 1.23819 0.76971 0.89360 0.79561 1.90789 1.36651 1.70372 1.39885 1.84485 1.74972 1.31937 1.41293 0.92885 0.92919 0.92793 0.91713 0.92002 0.92028 0.91796 0.90489 0.91510 0.88814 0.90010 0.87808 0.88441 0.88261 0.90460 0.84713 0.73002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.15 0.37 -0.73 16 2 C -0.13 -1.06 5.93 -26.74 -0.16 -1.22 16 3 C -0.12 -0.98 5.21 -26.74 -0.14 -1.12 16 4 C -0.12 -1.26 5.11 -26.73 -0.14 -1.40 16 5 C -0.11 -1.13 4.91 -26.73 -0.13 -1.26 16 6 C 0.10 1.48 2.47 -27.88 -0.07 1.41 16 7 H 0.12 1.79 7.16 -51.93 -0.37 1.42 16 8 O -0.32 -6.10 8.20 -47.19 -0.39 -6.49 16 9 C 0.51 11.70 7.86 34.63 0.27 11.97 16 10 O -0.52 -12.56 15.59 -19.24 -0.30 -12.86 16 11 C -0.11 -2.76 5.87 -105.05 -0.62 -3.38 16 12 C -0.19 -4.24 9.62 -38.91 -0.37 -4.61 16 13 C -0.10 -2.24 10.01 -39.73 -0.40 -2.64 16 14 C -0.20 -4.71 9.78 -38.80 -0.38 -5.09 16 15 C 0.10 2.50 5.57 -106.87 -0.59 1.91 16 16 C -0.46 -11.94 9.05 -37.73 -0.34 -12.28 16 17 H 0.08 2.05 7.90 -52.49 -0.41 1.63 16 18 C 0.07 1.82 5.14 -17.35 -0.09 1.73 16 19 N -0.79 -20.84 10.97 55.55 0.61 -20.23 16 20 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 C -0.09 -2.32 8.23 -38.43 -0.32 -2.63 16 25 C 0.46 7.19 7.63 36.00 0.27 7.47 16 26 O -0.49 -9.69 17.27 -25.39 -0.44 -10.13 16 27 O -0.51 -5.72 13.39 -39.26 -0.53 -6.24 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.92 7.82 -51.92 -0.41 0.52 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 2.08 7.59 -52.49 -0.40 1.68 16 40 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 43 H 0.14 3.84 5.77 -52.49 -0.30 3.53 16 44 H 0.41 2.81 9.10 45.56 0.41 3.23 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -31.72 379.80 -8.86 -40.59 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.69 Total: 7.94 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -2.83 Total: -11.88 kcal Atomic # 7 Polarization: -20.84 SS G_CDS: 0.61 Total: -20.23 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -1.65 Total: -35.72 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.72 -8.86 -40.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595691032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.394 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds