Wall clock time and date at job start Tue Mar 31 2020 12:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47470 * 2 1 4 4 C 1.52995 * 109.47446 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47010 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.46997 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.46788 * 305.00426 * 6 5 4 8 8 O 1.45198 * 109.47007 * 65.00305 * 6 5 4 9 9 C 1.34708 * 116.99791 * 210.00119 * 8 6 5 10 10 O 1.21466 * 120.00187 * 0.02562 * 9 8 6 11 11 C 1.47765 * 119.99713 * 180.27433 * 9 8 6 12 12 C 1.39965 * 120.03604 * 359.45187 * 11 9 8 13 13 C 1.38315 * 120.35972 * 179.69199 * 12 11 9 14 14 C 1.37766 * 120.41410 * 0.60488 * 13 12 11 15 15 C 1.40755 * 120.04626 * 359.67660 * 14 13 12 16 16 C 1.41448 * 120.16995 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99880 * 334.92126 * 16 15 14 18 18 C 1.39929 * 119.99795 * 154.92327 * 16 15 14 19 19 N 1.30827 * 120.00464 * 342.58637 * 18 16 15 20 20 Si 1.86803 * 119.99986 * 162.58614 * 18 16 15 21 21 H 1.48497 * 109.47259 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47086 * 119.99834 * 20 18 16 23 23 H 1.48506 * 109.46855 * 239.99789 * 20 18 16 24 24 C 1.39055 * 120.03087 * 179.72167 * 11 9 8 25 25 C 1.50697 * 109.47006 * 185.00392 * 6 5 4 26 26 O 1.20826 * 119.99864 * 244.99769 * 25 6 5 27 27 O 1.34231 * 120.00286 * 65.00275 * 25 6 5 28 28 H 1.09001 * 109.47660 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47235 * 300.00162 * 1 2 3 30 30 H 1.09001 * 109.47421 * 60.00258 * 1 2 3 31 31 H 1.09003 * 109.47447 * 239.99562 * 2 1 3 32 32 H 1.09003 * 109.46984 * 120.00020 * 2 1 3 33 33 H 1.09003 * 109.47143 * 59.99376 * 3 2 1 34 34 H 1.09003 * 109.47034 * 299.99990 * 3 2 1 35 35 H 1.09009 * 109.46857 * 60.00052 * 4 3 2 36 36 H 1.09003 * 109.47303 * 300.00201 * 4 3 2 37 37 H 1.09002 * 109.46928 * 60.00772 * 5 4 3 38 38 H 1.08991 * 109.47468 * 299.99996 * 5 4 3 39 39 H 1.08001 * 119.82036 * 359.97438 * 12 11 9 40 40 H 1.08001 * 119.79634 * 180.29560 * 13 12 11 41 41 H 1.07998 * 119.97301 * 179.69457 * 14 13 12 42 42 H 0.96995 * 120.00312 * 180.02562 * 19 18 16 43 43 H 1.07998 * 120.20083 * 359.97438 * 24 11 9 44 44 H 0.96699 * 116.99869 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0799 2.8849 0.0000 6 6 5.6100 2.8849 0.0000 7 1 5.9733 2.2957 0.8421 8 8 6.0940 2.3059 -1.2405 9 6 7.2778 1.6647 -1.1951 10 8 7.8888 1.5909 -0.1479 11 6 7.8357 1.0559 -2.4205 12 6 7.1293 1.1350 -3.6262 13 6 7.6481 0.5731 -4.7786 14 6 8.8600 -0.0817 -4.7508 15 6 9.5822 -0.1766 -3.5464 16 6 10.8269 -0.8478 -3.5149 17 1 11.0471 -1.6117 -4.2460 18 6 11.7729 -0.5221 -2.5366 19 7 11.6705 0.6027 -1.8764 20 14 13.1819 -1.6934 -2.1732 21 1 13.0718 -2.8872 -3.0495 22 1 14.4740 -1.0080 -2.4297 23 1 13.1197 -2.1164 -0.7510 24 6 9.0604 0.3989 -2.3757 25 6 6.1123 4.3003 0.1233 26 8 6.7307 4.8032 -0.7848 27 8 5.8729 5.0025 1.2420 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9336 0.9284 -0.8892 36 1 3.9329 0.9287 0.8909 37 1 3.7163 3.3992 0.8896 38 1 3.7170 3.3982 -0.8903 39 1 6.1760 1.6416 -3.6579 40 1 7.0976 0.6436 -5.7051 41 1 9.2561 -0.5222 -5.6538 42 1 12.3264 0.8287 -1.1985 43 1 9.6073 0.3319 -1.4468 44 1 6.2147 5.9065 1.2745 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595691032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:08 Heat of formation + Delta-G solvation = -205.538363 kcal Electronic energy + Delta-G solvation = -26594.366079 eV Core-core repulsion = 22667.670312 eV Total energy + Delta-G solvation = -3926.695767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17451 -40.95867 -39.26223 -38.00517 -37.33503 -36.80734 -35.64418 -34.04362 -32.21981 -31.40245 -30.23172 -27.32544 -26.30499 -25.31399 -23.09970 -22.87661 -22.19178 -21.84438 -21.52028 -19.82168 -19.36469 -18.52532 -18.17719 -17.72946 -16.96368 -16.69329 -16.61922 -16.46272 -16.21897 -15.37500 -15.20714 -14.89816 -14.83200 -14.59148 -14.37092 -14.08979 -13.91828 -13.56502 -13.40753 -13.06793 -12.86132 -12.82635 -12.76872 -12.66339 -12.59889 -12.50741 -12.24121 -12.11049 -11.91585 -11.80125 -11.76531 -11.56467 -11.40265 -11.32243 -11.20647 -11.12257 -9.65506 -9.46976 -8.70297 -6.42080 0.04651 0.90085 0.93779 1.21218 1.36865 1.43485 1.53568 1.70917 1.99266 2.18063 2.69815 3.42334 3.58491 3.61904 3.78329 3.94629 4.07579 4.13049 4.29634 4.34627 4.40589 4.54548 4.59449 4.70645 4.71595 4.83059 4.90381 4.98461 5.01683 5.06574 5.07378 5.09703 5.17119 5.25157 5.27873 5.37311 5.38622 5.41046 5.48896 5.55884 5.77691 5.85749 5.98235 6.19834 6.50176 6.62908 6.77870 6.83724 6.86191 8.27530 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.003283 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.132249 B = 8527.942644 C = 9518.715998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.111 4.111 4 C -0.123 4.123 5 C -0.096 4.096 6 C 0.087 3.913 7 H 0.121 0.879 8 O -0.319 6.319 9 C 0.518 3.482 10 O -0.542 6.542 11 C -0.129 4.129 12 C -0.179 4.179 13 C -0.098 4.098 14 C -0.201 4.201 15 C 0.066 3.934 16 C -0.492 4.492 17 H 0.089 0.911 18 C 0.028 3.972 19 N -0.829 5.829 20 Si 0.985 3.015 21 H -0.249 1.249 22 H -0.266 1.266 23 H -0.270 1.270 24 C -0.121 4.121 25 C 0.470 3.530 26 O -0.541 6.541 27 O -0.494 6.494 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.131 0.869 40 H 0.142 0.858 41 H 0.118 0.882 42 H 0.287 0.713 43 H 0.105 0.895 44 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.833 3.329 6.050 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.148 4.148 4 C -0.160 4.160 5 C -0.133 4.133 6 C 0.031 3.969 7 H 0.138 0.862 8 O -0.235 6.235 9 C 0.366 3.634 10 O -0.434 6.434 11 C -0.131 4.131 12 C -0.199 4.199 13 C -0.116 4.116 14 C -0.220 4.220 15 C 0.064 3.936 16 C -0.521 4.521 17 H 0.107 0.893 18 C -0.186 4.186 19 N -0.455 5.455 20 Si 0.806 3.194 21 H -0.172 1.172 22 H -0.191 1.191 23 H -0.195 1.195 24 C -0.141 4.141 25 C 0.312 3.688 26 O -0.431 6.431 27 O -0.308 6.308 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.143 0.857 38 H 0.106 0.894 39 H 0.149 0.851 40 H 0.160 0.840 41 H 0.136 0.864 42 H 0.098 0.902 43 H 0.123 0.877 44 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -17.552 3.231 6.287 18.921 hybrid contribution 1.496 0.459 0.427 1.622 sum -16.055 3.690 6.714 17.789 Atomic orbital electron populations 1.21758 0.95064 1.01828 1.02142 1.21561 0.96534 0.96919 1.01794 1.21545 0.93124 0.97112 1.03051 1.21626 0.97150 0.94776 1.02495 1.21788 0.85261 1.00213 1.06002 1.22562 0.98839 0.87485 0.88039 0.86180 1.86752 1.35835 1.64367 1.36577 1.21829 0.78302 0.74156 0.89104 1.90734 1.60116 1.59245 1.33259 1.19040 0.97340 1.05131 0.91562 1.20950 1.00998 1.06217 0.91716 1.20966 0.95469 0.97291 0.97874 1.21529 0.97890 1.05856 0.96766 1.17909 0.93601 0.91295 0.90836 1.19889 0.98903 1.19583 1.13710 0.89258 1.26900 1.02097 0.95937 0.93684 1.69887 1.35081 1.21160 1.19375 0.85107 0.76485 0.78824 0.79018 1.17199 1.19050 1.19454 1.21456 0.93137 1.00234 0.99225 1.23846 0.75779 0.89538 0.79658 1.90780 1.38974 1.71499 1.41798 1.84428 1.74210 1.33352 1.38789 0.92719 0.92098 0.92579 0.92859 0.92129 0.90360 0.91414 0.92709 0.91459 0.85655 0.89432 0.85139 0.84001 0.86438 0.90216 0.87676 0.70453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.13 -1.98 5.93 30.59 0.18 -1.80 16 3 C -0.11 -1.59 5.21 30.59 0.16 -1.43 16 4 C -0.12 -2.32 5.11 30.59 0.16 -2.16 16 5 C -0.10 -1.81 4.91 30.60 0.15 -1.66 16 6 C 0.09 2.54 2.47 29.85 0.07 2.61 16 7 H 0.12 3.54 7.16 -2.39 -0.02 3.52 16 8 O -0.32 -12.03 8.20 -49.79 -0.41 -12.44 16 9 C 0.52 24.16 7.86 70.34 0.55 24.72 16 10 O -0.54 -27.58 15.59 19.95 0.31 -27.27 16 11 C -0.13 -6.47 5.87 -20.14 -0.12 -6.59 16 12 C -0.18 -7.78 9.62 22.71 0.22 -7.56 16 13 C -0.10 -4.04 10.01 22.18 0.22 -3.82 16 14 C -0.20 -9.37 9.78 22.77 0.22 -9.15 16 15 C 0.07 3.56 5.57 -21.32 -0.12 3.44 16 16 C -0.49 -26.36 9.05 23.47 0.21 -26.14 16 17 H 0.09 4.48 7.90 -2.91 -0.02 4.45 16 18 C 0.03 1.47 5.14 85.25 0.44 1.91 16 19 N -0.83 -46.11 10.97 21.82 0.24 -45.87 16 20 Si 0.99 39.04 29.59 68.60 2.03 41.08 16 21 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 22 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 24 C -0.12 -6.75 8.23 23.02 0.19 -6.56 16 25 C 0.47 14.10 7.63 71.24 0.54 14.64 16 26 O -0.54 -21.28 17.27 28.32 0.49 -20.79 16 27 O -0.49 -9.83 13.39 -51.43 -0.69 -10.51 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 1.28 7.82 -2.38 -0.02 1.26 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.13 1.64 8.12 -2.39 -0.02 1.63 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.13 4.91 7.59 -2.91 -0.02 4.89 16 40 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 41 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 42 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 43 H 0.11 6.43 5.77 -2.91 -0.02 6.41 16 44 H 0.43 4.84 9.10 -74.06 -0.67 4.17 16 Total: -1.00 -72.38 379.80 6.11 -66.27 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.34 Total: 30.25 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 3.80 Total: -20.72 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.24 Total: -45.87 kcal Atomic # 8 Polarization: -70.71 SS G_CDS: -0.30 Total: -71.01 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.08 kcal Total: -72.38 6.11 -66.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595691032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.265 kcal (2) G-P(sol) polarization free energy of solvation -72.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds