Wall clock time and date at job start Tue Mar 31 2020 12:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46745 * 2 1 4 4 C 1.53000 * 109.47004 * 240.00615 * 2 1 3 5 5 C 1.52999 * 109.47172 * 120.00229 * 2 1 3 6 6 H 1.09002 * 109.46933 * 300.00220 * 5 2 1 7 7 C 1.50695 * 109.46795 * 179.97438 * 5 2 1 8 8 O 1.20822 * 120.00014 * 239.99532 * 7 5 2 9 9 O 1.34231 * 119.99982 * 60.00314 * 7 5 2 10 10 C 1.50704 * 109.46826 * 60.00267 * 5 2 1 11 11 O 1.20819 * 120.00261 * 359.97438 * 10 5 2 12 12 O 1.34222 * 119.99589 * 180.02562 * 10 5 2 13 13 C 1.45201 * 116.99853 * 179.97438 * 12 10 5 14 14 C 1.50700 * 109.47062 * 179.97438 * 13 12 10 15 15 C 1.38634 * 119.74887 * 269.72766 * 14 13 12 16 16 C 1.37624 * 120.24917 * 179.72023 * 15 14 13 17 17 C 1.40718 * 119.74228 * 0.57428 * 16 15 14 18 18 C 1.41394 * 120.24541 * 179.68008 * 17 16 15 19 19 H 1.08006 * 119.99895 * 204.40340 * 18 17 16 20 20 C 1.39942 * 120.00114 * 24.40644 * 18 17 16 21 21 N 1.30824 * 119.99904 * 17.84456 * 20 18 17 22 22 Si 1.86803 * 120.00117 * 197.85015 * 20 18 17 23 23 H 1.48499 * 109.47329 * 90.00090 * 22 20 18 24 24 H 1.48499 * 109.46840 * 209.99759 * 22 20 18 25 25 H 1.48498 * 109.47105 * 329.99457 * 22 20 18 26 26 C 1.40717 * 119.51114 * 359.70400 * 17 16 15 27 27 C 1.37616 * 119.74471 * 359.97438 * 26 17 16 28 28 H 1.08999 * 109.46871 * 299.99804 * 1 2 3 29 29 H 1.09007 * 109.47097 * 59.99718 * 1 2 3 30 30 H 1.09004 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47008 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.48059 * 299.99880 * 3 2 1 33 33 H 1.08999 * 109.47276 * 60.00444 * 3 2 1 34 34 H 1.09001 * 109.46799 * 299.99778 * 4 2 1 35 35 H 1.09001 * 109.47716 * 59.99574 * 4 2 1 36 36 H 1.08998 * 109.46795 * 179.97438 * 4 2 1 37 37 H 0.96704 * 116.99772 * 179.97438 * 9 7 5 38 38 H 1.09001 * 109.47310 * 299.99913 * 13 12 10 39 39 H 1.08998 * 109.47106 * 60.00166 * 13 12 10 40 40 H 1.07994 * 119.87871 * 359.97438 * 15 14 13 41 41 H 1.07999 * 120.13025 * 180.28016 * 16 15 14 42 42 H 0.96998 * 119.99988 * 180.02562 * 21 20 18 43 43 H 1.08007 * 120.12596 * 179.97438 * 26 17 16 44 44 H 1.08004 * 119.87485 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.6767 -0.2075 2.1392 7 6 3.5470 -0.7218 1.2488 8 8 4.1508 -1.7683 1.2488 9 8 4.2186 0.4405 1.2485 10 6 1.5377 -2.1422 1.2490 11 8 0.8428 -2.5372 0.3431 12 8 1.8616 -2.9685 2.2559 13 6 1.3421 -4.3228 2.1903 14 6 1.8066 -5.0980 3.3962 15 6 2.9984 -5.8042 3.3428 16 6 3.4353 -6.5110 4.4399 17 6 2.6612 -6.5248 5.6149 18 6 3.0966 -7.2529 6.7461 19 1 2.3787 -7.5968 7.4761 20 6 4.4577 -7.5279 6.9198 21 7 5.3534 -6.8410 6.2586 22 14 4.9955 -8.8761 8.0957 23 1 5.0830 -10.1653 7.3641 24 1 6.3258 -8.5372 8.6620 25 1 4.0055 -8.9973 9.1959 26 6 1.4504 -5.8090 5.6558 27 6 1.0364 -5.1038 4.5489 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2494 35 1 1.6767 -0.2073 -2.1393 36 1 3.1300 -0.7207 -1.2495 37 1 5.1842 0.3895 1.2487 38 1 0.2526 -4.2936 2.1743 39 1 1.7059 -4.8080 1.2847 40 1 3.5882 -5.7964 2.4382 41 1 4.3662 -7.0568 4.3976 42 1 6.2968 -7.0318 6.3788 43 1 0.8482 -5.8131 6.5524 44 1 0.1076 -4.5534 4.5781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602853355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:27 Heat of formation + Delta-G solvation = -167.195773 kcal Electronic energy + Delta-G solvation = -27100.538913 eV Core-core repulsion = 23175.505805 eV Total energy + Delta-G solvation = -3925.033108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38310 -39.73774 -37.91625 -37.20615 -36.27384 -35.68988 -33.85426 -30.98403 -29.89017 -29.33173 -27.49988 -27.41099 -27.08039 -24.02677 -22.89614 -21.14764 -21.03093 -20.03258 -19.28781 -18.15900 -17.64141 -17.37043 -17.11051 -16.22399 -16.01802 -15.56508 -15.31539 -14.51451 -14.26578 -13.96168 -13.90419 -13.83489 -13.40789 -13.16040 -12.73722 -12.56627 -12.40540 -12.19223 -12.11327 -11.99404 -11.74387 -11.71817 -11.48357 -11.44742 -11.16663 -11.07020 -10.98147 -10.93482 -10.75320 -10.55832 -10.43096 -10.10299 -9.97770 -9.65984 -9.44009 -9.20902 -7.53452 -7.43123 -6.84349 -4.44656 2.00830 2.07296 2.41879 2.89182 3.02004 3.02639 3.05559 3.06749 3.31455 3.86986 4.14256 4.47638 4.55708 4.76471 4.92607 5.05222 5.12950 5.17554 5.47699 5.54705 5.62370 5.67285 5.68589 5.71134 5.73253 5.83419 5.89348 6.04188 6.09485 6.24175 6.25800 6.28829 6.32344 6.35995 6.87084 6.90961 6.99485 7.21099 7.29002 7.54228 7.71176 7.75806 7.97365 7.98075 8.04387 8.21442 8.56412 8.80534 8.89153 10.09308 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.023479 B = 0.002791 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.271651 B =10028.243769 C =10691.755939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.045 4.045 3 C -0.152 4.152 4 C -0.160 4.160 5 C -0.073 4.073 6 H 0.141 0.859 7 C 0.491 3.509 8 O -0.485 6.485 9 O -0.507 6.507 10 C 0.477 3.523 11 O -0.498 6.498 12 O -0.335 6.335 13 C 0.138 3.862 14 C -0.236 4.236 15 C -0.072 4.072 16 C -0.171 4.171 17 C 0.118 3.882 18 C -0.457 4.457 19 H 0.080 0.920 20 C 0.075 3.925 21 N -0.784 5.784 22 Si 0.911 3.089 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.231 4.231 27 C -0.064 4.064 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.410 0.590 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.283 0.717 43 H 0.094 0.906 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.513 14.213 -10.214 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.045 4.045 3 C -0.209 4.209 4 C -0.217 4.217 5 C -0.093 4.093 6 H 0.159 0.841 7 C 0.331 3.669 8 O -0.370 6.370 9 O -0.320 6.320 10 C 0.319 3.681 11 O -0.388 6.388 12 O -0.251 6.251 13 C 0.066 3.934 14 C -0.237 4.237 15 C -0.091 4.091 16 C -0.190 4.190 17 C 0.116 3.884 18 C -0.485 4.485 19 H 0.098 0.902 20 C -0.144 4.144 21 N -0.409 5.409 22 Si 0.735 3.265 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.250 4.250 27 C -0.083 4.083 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.269 0.731 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.137 0.863 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.711 13.788 -10.471 17.706 hybrid contribution 1.004 -0.543 0.599 1.289 sum -2.707 13.245 -9.872 16.740 Atomic orbital electron populations 1.22144 0.92689 1.04541 1.01808 1.20381 0.97230 0.95264 0.91661 1.22149 1.03111 0.93574 1.02093 1.22208 1.00157 1.03044 0.96269 1.21100 0.89831 0.93729 1.04615 0.84147 1.22490 0.90217 0.81536 0.72689 1.90868 1.69898 1.32796 1.43487 1.84575 1.26728 1.35033 1.85688 1.22480 0.77785 0.87279 0.80547 1.90519 1.36154 1.76361 1.35773 1.86750 1.68540 1.25012 1.44782 1.21777 0.96979 0.76592 0.98061 1.18672 1.00575 1.08768 0.95699 1.20560 0.94050 0.96987 0.97465 1.21297 1.01825 1.03816 0.92047 1.17689 0.90313 0.88154 0.92263 1.19681 0.92462 1.29877 1.06511 0.90164 1.25978 0.96683 0.95622 0.96163 1.69837 1.02745 1.32859 1.35421 0.86271 0.78496 0.81210 0.80543 1.19153 1.20227 1.18522 1.20952 1.00970 1.05525 0.97579 1.20381 0.97283 0.97761 0.92833 0.92750 0.92026 0.89659 0.90112 0.92066 0.92232 0.89535 0.91943 0.93520 0.73052 0.91975 0.91890 0.89262 0.86254 0.90632 0.88735 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.18 37.16 0.30 -1.21 16 2 C -0.05 -0.46 0.54 -154.51 -0.08 -0.54 16 3 C -0.15 -1.22 7.96 37.15 0.30 -0.92 16 4 C -0.16 -1.78 7.93 37.16 0.29 -1.49 16 5 C -0.07 -0.90 2.15 -92.92 -0.20 -1.10 16 6 H 0.14 1.42 8.14 -51.93 -0.42 1.00 16 7 C 0.49 6.41 6.26 36.00 0.23 6.63 16 8 O -0.49 -8.50 16.37 -23.79 -0.39 -8.89 16 9 O -0.51 -4.49 10.34 -39.26 -0.41 -4.90 16 10 C 0.48 7.69 6.14 36.01 0.22 7.92 16 11 O -0.50 -8.28 11.10 -18.74 -0.21 -8.49 16 12 O -0.34 -6.48 9.61 -44.28 -0.43 -6.91 16 13 C 0.14 2.69 5.58 36.01 0.20 2.90 16 14 C -0.24 -5.36 5.54 -104.33 -0.58 -5.94 16 15 C -0.07 -1.75 9.67 -39.66 -0.38 -2.13 16 16 C -0.17 -4.49 8.70 -38.87 -0.34 -4.83 16 17 C 0.12 3.16 5.58 -106.82 -0.60 2.56 16 18 C -0.46 -11.98 9.05 -37.74 -0.34 -12.32 16 19 H 0.08 2.01 7.91 -52.48 -0.41 1.60 16 20 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 21 N -0.78 -20.21 10.95 55.55 0.61 -19.60 16 22 Si 0.91 18.38 29.60 -169.99 -5.03 13.35 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 26 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 27 C -0.06 -1.45 9.67 -39.66 -0.38 -1.84 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 30 H 0.08 1.03 5.52 -51.93 -0.29 0.74 16 31 H 0.08 0.65 5.32 -51.92 -0.28 0.38 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 1.18 5.52 -51.93 -0.29 0.89 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.52 7.22 -51.93 -0.37 0.15 16 37 H 0.41 2.09 9.10 45.56 0.41 2.51 16 38 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 39 H 0.06 1.21 8.07 -51.93 -0.42 0.79 16 40 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 41 H 0.12 3.23 6.16 -52.49 -0.32 2.90 16 42 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 43 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 44 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -30.91 361.37 -7.56 -38.47 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.33 Total: 8.09 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -1.83 Total: -16.58 kcal Atomic # 7 Polarization: -20.21 SS G_CDS: 0.61 Total: -19.60 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -1.43 Total: -29.18 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.91 -7.56 -38.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602853355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.725 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds