Wall clock time and date at job start Tue Mar 31 2020 13:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47353 * 2 1 4 4 H 1.09003 * 109.46989 * 55.00157 * 3 2 1 5 5 C 1.53000 * 109.47193 * 175.00204 * 3 2 1 6 6 O 1.45198 * 109.47006 * 185.00084 * 5 3 2 7 7 C 1.34231 * 116.99996 * 180.02562 * 6 5 3 8 8 O 1.20827 * 119.99674 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00114 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47172 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.47379 * 305.97980 * 10 9 7 12 12 C 1.50702 * 109.46736 * 65.97792 * 10 9 7 13 13 H 1.08001 * 119.99997 * 26.91880 * 12 10 9 14 14 C 1.37876 * 120.00335 * 206.91145 * 12 10 9 15 15 N 1.31516 * 119.99513 * 353.28710 * 14 12 10 16 16 Si 1.86795 * 120.00238 * 173.55427 * 14 12 10 17 17 H 1.48504 * 109.47397 * 269.72698 * 16 14 12 18 18 H 1.48494 * 109.47437 * 29.73079 * 16 14 12 19 19 H 1.48505 * 109.47032 * 149.72889 * 16 14 12 20 20 C 1.50698 * 109.47059 * 185.97639 * 10 9 7 21 21 C 1.38237 * 120.00126 * 294.44407 * 20 10 9 22 22 C 1.38237 * 119.99669 * 179.78838 * 21 20 10 23 23 C 1.38230 * 120.00504 * 0.44373 * 22 21 20 24 24 C 1.38240 * 119.99695 * 359.81677 * 23 22 21 25 25 C 1.38230 * 119.99944 * 359.97062 * 24 23 22 26 26 C 1.50704 * 109.47067 * 295.00382 * 3 2 1 27 27 O 1.20827 * 119.99949 * 239.99869 * 26 3 2 28 28 O 1.34231 * 120.00110 * 59.99672 * 26 3 2 29 29 H 1.09001 * 109.47095 * 300.00225 * 1 2 3 30 30 H 1.08998 * 109.47231 * 59.99442 * 1 2 3 31 31 H 1.08999 * 109.47250 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46586 * 239.99659 * 2 1 3 33 33 H 1.08998 * 109.47231 * 120.00558 * 2 1 3 34 34 H 1.09001 * 109.47146 * 65.00101 * 5 3 2 35 35 H 1.08992 * 109.47011 * 304.99924 * 5 3 2 36 36 H 1.09010 * 109.47114 * 59.99918 * 9 7 6 37 37 H 1.08997 * 109.46959 * 299.99845 * 9 7 6 38 38 H 0.96999 * 119.99944 * 354.68325 * 15 14 12 39 39 H 1.07995 * 119.99876 * 0.02562 * 21 20 10 40 40 H 1.08003 * 119.99187 * 180.27775 * 22 21 20 41 41 H 1.07997 * 120.00489 * 179.83259 * 23 22 21 42 42 H 1.07997 * 119.99767 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.00065 * 180.02562 * 25 24 23 44 44 H 0.96705 * 116.99694 * 180.02562 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4442 0.1257 6 8 4.0391 2.8114 0.2447 7 6 5.3643 2.9886 0.3637 8 8 6.1035 2.0328 0.3686 9 6 5.9301 4.3795 0.4910 10 6 7.4533 4.3014 0.6120 11 1 7.7190 3.6329 1.4308 12 6 8.0330 3.7739 -0.6753 13 1 7.5055 3.9225 -1.6059 14 6 9.2368 3.1018 -0.6650 15 7 9.9431 3.0352 0.4424 16 14 9.8680 2.2924 -2.2256 17 1 9.3770 0.8923 -2.2906 18 1 9.3759 3.0448 -3.4074 19 1 11.3530 2.2963 -2.2195 20 6 8.0066 5.6760 0.8860 21 6 7.8957 6.6689 -0.0695 22 6 8.3995 7.9311 0.1837 23 6 9.0222 8.1979 1.3886 24 6 9.1378 7.2036 2.3420 25 6 8.6303 5.9426 2.0906 26 6 1.6413 2.1162 -1.2877 27 8 2.4897 2.5531 -2.0289 28 8 0.3437 2.2311 -1.6113 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 4.0030 0.9835 -0.7597 35 1 3.8571 0.8799 1.0112 36 1 5.5195 4.8589 1.3798 37 1 5.6648 4.9618 -0.3913 38 1 9.6566 3.5226 1.2306 39 1 7.4122 6.4595 -1.0121 40 1 8.3088 8.7079 -0.5610 41 1 9.4181 9.1833 1.5854 42 1 9.6247 7.4119 3.2832 43 1 8.7203 5.1659 2.8356 44 1 0.1370 2.6706 -2.4475 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609923658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:11 Heat of formation + Delta-G solvation = -172.502737 kcal Electronic energy + Delta-G solvation = -26936.715926 eV Core-core repulsion = 23011.452690 eV Total energy + Delta-G solvation = -3925.263235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.65345 -39.65964 -38.48838 -36.57291 -36.07178 -35.08616 -34.26389 -31.41871 -30.13043 -30.00473 -28.95447 -25.67573 -24.63351 -23.38635 -22.83795 -21.70083 -20.61235 -20.49607 -19.51193 -18.26677 -17.35538 -17.07460 -16.79552 -16.07707 -15.76834 -15.54335 -15.49689 -14.42761 -14.17713 -14.15200 -13.75757 -13.68319 -13.59164 -13.31713 -13.01450 -12.57448 -12.41199 -12.24888 -12.14727 -11.88158 -11.74644 -11.62338 -11.43750 -11.27181 -11.08402 -10.99742 -10.71746 -10.51445 -10.45101 -10.17503 -10.16466 -10.05886 -9.75363 -9.56831 -8.68480 -8.33116 -8.14978 -7.67323 -6.26531 -3.96644 2.14502 2.17856 2.21864 2.83849 3.07653 3.16359 3.51061 3.54607 3.68720 4.38540 4.54819 4.59366 4.66138 4.69420 5.01858 5.13837 5.22607 5.38319 5.41848 5.46275 5.58940 5.59816 5.62312 5.66736 5.74758 5.78949 5.85520 5.96959 6.03363 6.11195 6.14405 6.30306 6.38274 6.38987 6.58257 6.76199 6.88210 7.07092 7.14998 7.21262 7.35697 7.68268 7.80950 7.83400 8.16662 8.48553 8.62409 8.93245 9.72623 11.12867 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.003526 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.572811 B = 7938.493709 C = 9006.356114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.114 4.114 3 C -0.078 4.078 4 H 0.119 0.881 5 C 0.078 3.922 6 O -0.367 6.367 7 C 0.461 3.539 8 O -0.471 6.471 9 C -0.088 4.088 10 C 0.069 3.931 11 H 0.051 0.949 12 C -0.574 4.574 13 H 0.048 0.952 14 C 0.034 3.966 15 N -0.905 5.905 16 Si 1.063 2.937 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.287 1.287 20 C -0.034 4.034 21 C -0.105 4.105 22 C -0.129 4.129 23 C -0.150 4.150 24 C -0.125 4.125 25 C -0.129 4.129 26 C 0.480 3.520 27 O -0.494 6.494 28 O -0.515 6.515 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.272 0.728 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.866 0.013 1.264 17.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.152 4.152 3 C -0.097 4.097 4 H 0.136 0.864 5 C 0.004 3.996 6 O -0.286 6.286 7 C 0.303 3.697 8 O -0.354 6.354 9 C -0.126 4.126 10 C 0.050 3.950 11 H 0.069 0.931 12 C -0.611 4.611 13 H 0.067 0.933 14 C -0.172 4.172 15 N -0.540 5.540 16 Si 0.892 3.108 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.213 1.213 20 C -0.035 4.035 21 C -0.123 4.123 22 C -0.148 4.148 23 C -0.169 4.169 24 C -0.143 4.143 25 C -0.147 4.147 26 C 0.321 3.679 27 O -0.379 6.379 28 O -0.328 6.328 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -16.066 -1.344 0.817 16.142 hybrid contribution -1.174 1.176 -0.054 1.663 sum -17.240 -0.168 0.763 17.258 Atomic orbital electron populations 1.21979 0.94095 1.02052 1.03676 1.21464 0.97375 0.92488 1.03883 1.21225 0.95886 0.98171 0.94427 0.86351 1.22692 0.90662 0.82973 1.03308 1.86498 1.27221 1.30151 1.84690 1.23865 0.79024 0.93672 0.73168 1.90706 1.58853 1.42680 1.43179 1.21459 0.98795 0.89473 1.02855 1.17947 0.87553 0.89431 1.00068 0.93051 1.21623 1.08173 1.39342 0.92008 0.93339 1.25598 0.93655 0.95220 1.02741 1.70710 1.40040 1.40722 1.02538 0.83637 0.75975 0.76500 0.74662 1.21430 1.21569 1.21251 1.20734 0.94975 0.96245 0.91506 1.20953 1.00119 0.92263 0.98986 1.21022 0.99869 0.96984 0.96886 1.20841 1.02459 0.98611 0.94947 1.20961 1.00649 0.93839 0.98849 1.21063 1.00125 0.96142 0.97360 1.23281 0.79929 0.76740 0.87976 1.90806 1.51494 1.44443 1.51204 1.84588 1.28480 1.74353 1.45352 0.92380 0.90359 0.92398 0.90973 0.89810 0.90463 0.90061 0.90463 0.89043 0.91723 0.86546 0.87351 0.87512 0.87376 0.87088 0.73639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.55 37.16 0.36 -0.75 16 2 C -0.11 -0.92 5.39 -26.73 -0.14 -1.06 16 3 C -0.08 -0.83 2.57 -91.77 -0.24 -1.07 16 4 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 5 C 0.08 1.14 4.38 37.16 0.16 1.30 16 6 O -0.37 -6.62 9.47 -44.46 -0.42 -7.04 16 7 C 0.46 9.85 7.71 36.00 0.28 10.13 16 8 O -0.47 -11.74 14.77 -18.75 -0.28 -12.02 16 9 C -0.09 -1.81 5.07 -27.88 -0.14 -1.95 16 10 C 0.07 1.66 1.23 -92.92 -0.11 1.55 16 11 H 0.05 1.37 6.59 -51.93 -0.34 1.03 16 12 C -0.57 -15.81 6.35 -34.44 -0.22 -16.02 16 13 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 14 C 0.03 0.97 5.45 -17.82 -0.10 0.88 16 15 N -0.91 -27.54 13.56 55.43 0.75 -26.79 16 16 Si 1.06 26.53 29.91 -169.99 -5.08 21.44 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 C -0.03 -0.76 4.54 -104.62 -0.47 -1.23 16 21 C -0.11 -2.18 8.90 -39.58 -0.35 -2.53 16 22 C -0.13 -2.36 10.05 -39.58 -0.40 -2.75 16 23 C -0.15 -2.62 10.05 -39.58 -0.40 -3.01 16 24 C -0.12 -2.28 10.05 -39.58 -0.40 -2.68 16 25 C -0.13 -2.68 9.18 -39.58 -0.36 -3.04 16 26 C 0.48 5.80 7.48 36.01 0.27 6.07 16 27 O -0.49 -8.22 16.18 -23.95 -0.39 -8.60 16 28 O -0.51 -4.29 10.57 -39.26 -0.41 -4.70 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.57 5.46 -51.93 -0.28 0.29 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.26 7.95 -51.93 -0.41 0.85 16 35 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 36 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 37 H 0.09 1.82 7.97 -51.93 -0.41 1.41 16 38 H 0.27 8.10 6.24 -40.82 -0.25 7.84 16 39 H 0.12 2.39 7.85 -52.49 -0.41 1.97 16 40 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 43 H 0.11 2.25 7.95 -52.48 -0.42 1.84 16 44 H 0.40 1.91 9.10 45.56 0.41 2.32 16 LS Contribution 371.80 15.07 5.60 5.60 Total: -1.00 -35.54 371.80 -8.05 -43.59 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.55 Total: 4.70 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -2.27 Total: -16.17 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.75 Total: -26.79 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.50 Total: -32.37 kcal Atomic # 14 Polarization: 26.53 SS G_CDS: -5.08 Total: 21.44 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.54 -8.05 -43.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609923658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.913 kcal (2) G-P(sol) polarization free energy of solvation -35.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds