Wall clock time and date at job start Tue Mar 31 2020 13:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47353 * 2 1 4 4 H 1.09003 * 109.46989 * 55.00157 * 3 2 1 5 5 C 1.53000 * 109.47193 * 175.00204 * 3 2 1 6 6 O 1.45198 * 109.47006 * 185.00084 * 5 3 2 7 7 C 1.34231 * 116.99996 * 180.02562 * 6 5 3 8 8 O 1.20827 * 119.99674 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00114 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47172 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.47379 * 305.97980 * 10 9 7 12 12 C 1.50702 * 109.46736 * 65.97792 * 10 9 7 13 13 H 1.08001 * 119.99997 * 26.91880 * 12 10 9 14 14 C 1.37876 * 120.00335 * 206.91145 * 12 10 9 15 15 N 1.31516 * 119.99513 * 353.28710 * 14 12 10 16 16 Si 1.86795 * 120.00238 * 173.55427 * 14 12 10 17 17 H 1.48504 * 109.47397 * 269.72698 * 16 14 12 18 18 H 1.48494 * 109.47437 * 29.73079 * 16 14 12 19 19 H 1.48505 * 109.47032 * 149.72889 * 16 14 12 20 20 C 1.50698 * 109.47059 * 185.97639 * 10 9 7 21 21 C 1.38237 * 120.00126 * 294.44407 * 20 10 9 22 22 C 1.38237 * 119.99669 * 179.78838 * 21 20 10 23 23 C 1.38230 * 120.00504 * 0.44373 * 22 21 20 24 24 C 1.38240 * 119.99695 * 359.81677 * 23 22 21 25 25 C 1.38230 * 119.99944 * 359.97062 * 24 23 22 26 26 C 1.50704 * 109.47067 * 295.00382 * 3 2 1 27 27 O 1.20827 * 119.99949 * 239.99869 * 26 3 2 28 28 O 1.34231 * 120.00110 * 59.99672 * 26 3 2 29 29 H 1.09001 * 109.47095 * 300.00225 * 1 2 3 30 30 H 1.08998 * 109.47231 * 59.99442 * 1 2 3 31 31 H 1.08999 * 109.47250 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46586 * 239.99659 * 2 1 3 33 33 H 1.08998 * 109.47231 * 120.00558 * 2 1 3 34 34 H 1.09001 * 109.47146 * 65.00101 * 5 3 2 35 35 H 1.08992 * 109.47011 * 304.99924 * 5 3 2 36 36 H 1.09010 * 109.47114 * 59.99918 * 9 7 6 37 37 H 1.08997 * 109.46959 * 299.99845 * 9 7 6 38 38 H 0.96999 * 119.99944 * 354.68325 * 15 14 12 39 39 H 1.07995 * 119.99876 * 0.02562 * 21 20 10 40 40 H 1.08003 * 119.99187 * 180.27775 * 22 21 20 41 41 H 1.07997 * 120.00489 * 179.83259 * 23 22 21 42 42 H 1.07997 * 119.99767 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.00065 * 180.02562 * 25 24 23 44 44 H 0.96705 * 116.99694 * 180.02562 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4442 0.1257 6 8 4.0391 2.8114 0.2447 7 6 5.3643 2.9886 0.3637 8 8 6.1035 2.0328 0.3686 9 6 5.9301 4.3795 0.4910 10 6 7.4533 4.3014 0.6120 11 1 7.7190 3.6329 1.4308 12 6 8.0330 3.7739 -0.6753 13 1 7.5055 3.9225 -1.6059 14 6 9.2368 3.1018 -0.6650 15 7 9.9431 3.0352 0.4424 16 14 9.8680 2.2924 -2.2256 17 1 9.3770 0.8923 -2.2906 18 1 9.3759 3.0448 -3.4074 19 1 11.3530 2.2963 -2.2195 20 6 8.0066 5.6760 0.8860 21 6 7.8957 6.6689 -0.0695 22 6 8.3995 7.9311 0.1837 23 6 9.0222 8.1979 1.3886 24 6 9.1378 7.2036 2.3420 25 6 8.6303 5.9426 2.0906 26 6 1.6413 2.1162 -1.2877 27 8 2.4897 2.5531 -2.0289 28 8 0.3437 2.2311 -1.6113 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 4.0030 0.9835 -0.7597 35 1 3.8571 0.8799 1.0112 36 1 5.5195 4.8589 1.3798 37 1 5.6648 4.9618 -0.3913 38 1 9.6566 3.5226 1.2306 39 1 7.4122 6.4595 -1.0121 40 1 8.3088 8.7079 -0.5610 41 1 9.4181 9.1833 1.5854 42 1 9.6247 7.4119 3.2832 43 1 8.7203 5.1659 2.8356 44 1 0.1370 2.6706 -2.4475 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609923658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:11 Heat of formation + Delta-G solvation = -193.193157 kcal Electronic energy + Delta-G solvation = -26937.613129 eV Core-core repulsion = 23011.452690 eV Total energy + Delta-G solvation = -3926.160439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.78373 -41.13676 -40.03475 -37.89139 -37.09043 -36.23301 -35.99779 -33.40296 -31.63154 -31.12515 -30.30364 -27.39651 -25.99627 -24.84973 -23.92273 -23.22455 -22.15199 -21.44826 -21.18561 -19.20520 -18.90051 -18.62393 -18.28671 -17.52417 -17.17122 -17.04185 -16.62954 -15.98283 -15.72480 -15.68490 -15.01326 -14.86249 -14.79406 -14.46066 -14.39239 -14.09615 -13.96847 -13.71612 -13.55057 -13.21388 -13.06484 -12.78462 -12.68922 -12.68233 -12.43124 -12.10821 -12.05829 -11.98530 -11.81818 -11.77662 -11.65473 -11.57390 -11.43243 -11.31062 -10.67901 -10.47590 -9.65793 -9.31731 -8.50412 -6.18727 0.66110 0.70030 1.19145 1.38148 1.46465 1.55058 1.70482 1.72742 2.01953 2.57185 3.07890 3.29294 3.38058 3.69342 3.86465 4.06323 4.09326 4.21561 4.23379 4.27205 4.30142 4.35089 4.42985 4.46172 4.50489 4.55066 4.64551 4.74976 4.82295 4.88065 4.98619 5.12234 5.17317 5.23635 5.34714 5.37683 5.47347 5.55814 5.61805 5.73129 5.79054 5.89323 6.17931 6.26374 6.35895 6.72029 6.96217 6.98986 7.55941 8.89988 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.003526 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.572811 B = 7938.493709 C = 9006.356114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.110 4.110 3 C -0.071 4.071 4 H 0.142 0.858 5 C 0.070 3.930 6 O -0.360 6.360 7 C 0.465 3.535 8 O -0.517 6.517 9 C -0.085 4.085 10 C 0.072 3.928 11 H 0.015 0.985 12 C -0.568 4.568 13 H 0.035 0.965 14 C -0.018 4.018 15 N -0.938 5.938 16 Si 1.097 2.903 17 H -0.287 1.287 18 H -0.272 1.272 19 H -0.282 1.282 20 C -0.058 4.058 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.124 4.124 25 C -0.148 4.148 26 C 0.486 3.514 27 O -0.549 6.549 28 O -0.497 6.497 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.263 0.737 39 H 0.110 0.890 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.101 0.899 44 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.433 1.709 1.503 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.148 4.148 3 C -0.090 4.090 4 H 0.159 0.841 5 C -0.004 4.004 6 O -0.278 6.278 7 C 0.308 3.692 8 O -0.404 6.404 9 C -0.123 4.123 10 C 0.054 3.946 11 H 0.033 0.967 12 C -0.606 4.606 13 H 0.054 0.946 14 C -0.217 4.217 15 N -0.575 5.575 16 Si 0.921 3.079 17 H -0.214 1.214 18 H -0.197 1.197 19 H -0.208 1.208 20 C -0.058 4.058 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.159 4.159 24 C -0.142 4.142 25 C -0.167 4.167 26 C 0.329 3.671 27 O -0.438 6.438 28 O -0.311 6.311 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.128 0.872 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.119 0.881 44 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -17.711 0.372 1.048 17.746 hybrid contribution -0.857 0.709 -0.098 1.117 sum -18.568 1.082 0.950 18.624 Atomic orbital electron populations 1.21954 0.92666 1.02946 1.03832 1.21510 0.98420 0.90432 1.04420 1.21295 0.92792 1.00289 0.94637 0.84059 1.23023 0.93392 0.81101 1.02876 1.86468 1.25137 1.32419 1.83797 1.23989 0.79820 0.93403 0.71985 1.90686 1.60173 1.44009 1.45509 1.21393 0.96751 0.89612 1.04529 1.17758 0.89691 0.90126 0.97071 0.96668 1.21833 1.07402 1.38517 0.92854 0.94626 1.26687 0.94537 0.96132 1.04384 1.70787 1.41092 1.42570 1.03068 0.83202 0.75839 0.76016 0.72798 1.21394 1.19700 1.20769 1.20500 0.96665 0.95577 0.93101 1.21016 1.01320 0.93392 0.98459 1.21397 0.98462 0.96422 0.98040 1.21331 1.00706 1.00026 0.93842 1.21323 0.99676 0.92725 1.00436 1.21143 1.01010 0.97497 0.97026 1.23516 0.80350 0.75518 0.87717 1.90798 1.53095 1.46979 1.52976 1.84549 1.26134 1.73923 1.46480 0.91487 0.90877 0.91190 0.91571 0.88281 0.92782 0.88781 0.87466 0.88315 0.92608 0.87229 0.84057 0.83409 0.84361 0.88069 0.71542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.55 71.98 0.69 -1.03 16 2 C -0.11 -1.57 5.39 30.59 0.16 -1.40 16 3 C -0.07 -1.43 2.57 -11.54 -0.03 -1.46 16 4 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 5 C 0.07 2.07 4.38 71.98 0.32 2.39 16 6 O -0.36 -13.20 9.47 -46.45 -0.44 -13.64 16 7 C 0.46 20.53 7.71 71.24 0.55 21.08 16 8 O -0.52 -27.08 14.77 21.96 0.32 -26.76 16 9 C -0.09 -3.59 5.07 29.85 0.15 -3.44 16 10 C 0.07 3.65 1.23 -12.29 -0.02 3.63 16 11 H 0.02 0.86 6.59 -2.39 -0.02 0.85 16 12 C -0.57 -32.48 6.35 25.60 0.16 -32.31 16 13 H 0.04 2.07 7.82 -2.91 -0.02 2.04 16 14 C -0.02 -1.08 5.45 84.65 0.46 -0.62 16 15 N -0.94 -59.33 13.56 21.45 0.29 -59.04 16 16 Si 1.10 54.77 29.91 68.60 2.05 56.82 16 17 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 18 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 20 C -0.06 -2.62 4.54 -19.87 -0.09 -2.71 16 21 C -0.12 -5.07 8.90 22.27 0.20 -4.87 16 22 C -0.13 -4.20 10.05 22.27 0.22 -3.98 16 23 C -0.14 -4.38 10.05 22.27 0.22 -4.15 16 24 C -0.12 -4.24 10.05 22.27 0.22 -4.01 16 25 C -0.15 -6.22 9.18 22.27 0.20 -6.01 16 26 C 0.49 11.32 7.48 71.24 0.53 11.85 16 27 O -0.55 -18.50 16.18 26.93 0.44 -18.07 16 28 O -0.50 -7.28 10.57 -51.43 -0.54 -7.83 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.88 5.46 -2.39 -0.01 0.87 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 1.85 7.95 -2.39 -0.02 1.83 16 35 H 0.09 2.51 8.13 -2.39 -0.02 2.49 16 36 H 0.11 3.81 8.14 -2.38 -0.02 3.79 16 37 H 0.10 4.00 7.97 -2.39 -0.02 3.98 16 38 H 0.26 16.54 6.24 -92.71 -0.58 15.96 16 39 H 0.11 4.52 7.85 -2.91 -0.02 4.50 16 40 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 41 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 42 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 43 H 0.10 4.30 7.95 -2.91 -0.02 4.28 16 44 H 0.42 3.16 9.10 -74.05 -0.67 2.49 16 Total: -1.00 -81.04 371.80 6.61 -74.43 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.53 Total: 21.13 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 3.96 Total: -27.06 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.29 Total: -59.04 kcal Atomic # 8 Polarization: -66.06 SS G_CDS: -0.22 Total: -66.29 kcal Atomic # 14 Polarization: 54.77 SS G_CDS: 2.05 Total: 56.82 kcal Total: -81.04 6.61 -74.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609923658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.760 kcal (2) G-P(sol) polarization free energy of solvation -81.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds