Wall clock time and date at job start Tue Mar 31 2020 13:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99780 * 2 1 4 4 N 1.46903 * 109.46997 * 125.00108 * 3 2 1 5 5 C 1.46899 * 111.00370 * 174.85535 * 4 3 2 6 6 H 1.09005 * 109.46626 * 33.84967 * 5 4 3 7 7 C 1.53001 * 109.47305 * 153.84726 * 5 4 3 8 8 N 1.46504 * 109.46884 * 305.00045 * 7 5 4 9 9 C 1.34775 * 119.99855 * 180.02562 * 8 7 5 10 10 O 1.21284 * 120.00067 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99882 * 179.97438 * 9 8 7 12 12 S 1.80999 * 109.47127 * 179.97438 * 11 9 8 13 13 C 1.76201 * 100.00097 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99898 * 0.02562 * 13 12 11 15 15 C 1.38806 * 119.99786 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99972 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99523 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47506 * 0.02562 * 17 15 13 19 19 H 1.48511 * 109.47197 * 120.00141 * 17 15 13 20 20 H 1.48500 * 109.47101 * 240.00057 * 17 15 13 21 21 C 1.50694 * 109.47240 * 273.84533 * 5 4 3 22 22 C 1.38236 * 120.00283 * 314.50270 * 21 5 4 23 23 C 1.38228 * 120.00165 * 179.80709 * 22 21 5 24 24 C 1.38240 * 120.00217 * 0.40039 * 23 22 21 25 25 C 1.38243 * 119.99423 * 359.84786 * 24 23 22 26 26 C 1.38229 * 120.00110 * 359.96335 * 25 24 23 27 27 H 1.08005 * 120.00182 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99993 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.99906 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47520 * 5.00304 * 3 2 1 31 31 H 1.08997 * 109.47785 * 244.99928 * 3 2 1 32 32 H 1.00902 * 111.00232 * 298.81409 * 4 3 2 33 33 H 1.08995 * 109.47189 * 65.00160 * 7 5 4 34 34 H 1.08997 * 109.47051 * 185.00385 * 7 5 4 35 35 H 0.97003 * 119.99935 * 359.97438 * 8 7 5 36 36 H 1.08995 * 109.47288 * 299.99836 * 11 9 8 37 37 H 1.09006 * 109.47086 * 59.99953 * 11 9 8 38 38 H 0.97001 * 119.99502 * 179.97438 * 16 15 13 39 39 H 1.08000 * 119.99611 * 359.97438 * 22 21 5 40 40 H 1.07998 * 120.00400 * 180.22552 * 23 22 21 41 41 H 1.07993 * 120.00559 * 179.83571 * 24 23 22 42 42 H 1.08003 * 119.99238 * 179.97438 * 25 24 23 43 43 H 1.08006 * 119.99745 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.8355 2.5370 1.0977 6 1 3.2609 3.3675 0.6873 7 6 4.2918 2.8843 2.5162 8 7 3.1213 3.0140 3.3877 9 6 3.2818 3.3187 4.6907 10 8 4.3952 3.4850 5.1419 11 6 2.0777 3.4527 5.5870 12 16 2.6175 3.8634 7.2651 13 6 1.0553 3.9565 8.0748 14 1 0.1472 3.7778 7.5183 15 6 0.9920 4.2595 9.4279 16 7 2.0988 4.4777 10.1060 17 14 -0.6642 4.3589 10.2861 18 1 -1.7459 4.0747 9.3091 19 1 -0.7140 3.3594 11.3834 20 1 -0.8495 5.7208 10.8482 21 6 5.0413 2.2831 0.2303 22 6 5.7548 1.1069 0.3655 23 6 6.8585 0.8722 -0.4329 24 6 7.2537 1.8175 -1.3610 25 6 6.5432 2.9960 -1.4927 26 6 5.4372 3.2289 -0.6969 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4027 -0.9313 32 1 2.5015 1.2625 2.0112 33 1 4.9397 2.0932 2.8934 34 1 4.8397 3.8265 2.5011 35 1 2.2308 2.8814 3.0266 36 1 1.4300 4.2438 5.2095 37 1 1.5296 2.5106 5.6023 38 1 2.0544 4.6898 11.0515 39 1 5.4482 0.3701 1.0932 40 1 7.4138 -0.0483 -0.3298 41 1 8.1176 1.6354 -1.9830 42 1 6.8523 3.7346 -2.2175 43 1 4.8824 4.1499 -0.7996 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753295767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:52 Heat of formation + Delta-G solvation = 10.182549 kcal Electronic energy + Delta-G solvation = -23274.020489 eV Core-core repulsion = 19831.724704 eV Total energy + Delta-G solvation = -3442.295785 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.05301 -39.02215 -37.31202 -34.97448 -33.20408 -32.44081 -31.22199 -30.98592 -29.83432 -27.59582 -25.51297 -24.84798 -23.50068 -22.68287 -20.70116 -20.48120 -20.05604 -17.97851 -17.05484 -16.80397 -16.18623 -16.15922 -15.80733 -15.24900 -15.06018 -14.81621 -14.34286 -14.24700 -14.14072 -13.91937 -13.52519 -13.34150 -13.09025 -12.99494 -12.86435 -12.55839 -12.18060 -12.03225 -11.68641 -11.35874 -11.20055 -11.13632 -11.08025 -11.03303 -10.76894 -9.82417 -9.79200 -9.48194 -9.10562 -9.08663 -8.97429 -8.92640 -8.86665 -8.24787 -6.51438 -6.23014 -3.93573 1.12226 1.25157 1.92783 2.97612 3.05043 3.20691 3.26666 3.30997 3.54896 3.70204 3.81762 4.18961 4.45490 4.61525 4.70377 4.73606 4.81238 4.82971 4.94177 4.99521 5.11764 5.12321 5.22565 5.29752 5.33334 5.40942 5.53702 5.58201 5.64078 5.75729 5.85069 5.86978 5.88184 6.10439 6.24952 6.28262 6.30628 6.35122 6.39829 6.48967 6.69518 6.81738 7.01029 7.57155 7.59262 8.34134 8.54872 9.22481 10.84477 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015969 B = 0.002524 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.003848 B =11089.682512 C =12437.462331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.149 4.149 3 C 0.085 3.915 4 N -0.680 5.680 5 C 0.118 3.882 6 H 0.061 0.939 7 C 0.123 3.877 8 N -0.743 5.743 9 C 0.534 3.466 10 O -0.512 6.512 11 C -0.154 4.154 12 S -0.059 6.059 13 C -0.535 4.535 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.076 4.076 22 C -0.081 4.081 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.114 4.114 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.349 0.651 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.393 0.607 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.268 0.732 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 -6.833 -26.312 27.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.167 4.167 3 C -0.043 4.043 4 N -0.313 5.313 5 C 0.009 3.991 6 H 0.078 0.922 7 C -0.001 4.001 8 N -0.399 5.399 9 C 0.320 3.680 10 O -0.386 6.386 11 C -0.304 4.304 12 S 0.167 5.833 13 C -0.683 4.683 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.502 5.502 17 Si 0.745 3.255 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.206 1.206 21 C -0.077 4.077 22 C -0.099 4.099 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.133 4.133 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.170 0.830 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.227 0.773 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.147 0.853 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.839 -6.889 -25.666 27.012 hybrid contribution -3.397 0.455 0.040 3.428 sum 1.442 -6.435 -25.627 26.461 Atomic orbital electron populations 1.23919 0.95952 1.02041 1.00756 1.22887 0.95472 0.98643 0.99693 1.21120 0.93532 0.94591 0.95096 1.60348 1.25760 1.39041 1.06200 1.20622 0.92687 0.91475 0.94358 0.92158 1.21467 0.88797 1.02680 0.87175 1.46053 1.09183 1.74811 1.09816 1.20303 0.91037 0.75384 0.81310 1.90719 1.26139 1.47679 1.74040 1.23534 0.98704 1.05007 1.03181 1.85423 1.11848 1.91224 0.94765 1.22902 0.92796 1.55561 0.97064 0.90890 1.24999 0.97703 0.94582 0.96350 1.70026 1.26790 1.44457 1.08967 0.86113 0.82173 0.77940 0.79236 1.19634 1.20547 1.20564 1.19589 0.96274 0.95026 0.96799 1.21038 0.93759 0.96664 0.98485 1.21203 0.97310 0.99427 0.96474 1.21164 0.99714 0.94298 0.98666 1.21067 0.95910 0.97548 0.99776 1.21040 0.97438 0.98816 0.95957 0.88224 0.88666 0.86764 0.94587 0.90062 0.83029 0.90360 0.90643 0.77301 0.89275 0.89158 0.92217 0.85260 0.86164 0.86365 0.86246 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 14.32 29.01 0.42 -0.92 16 2 C -0.15 -1.13 9.82 -36.03 -0.35 -1.49 16 3 C 0.09 0.65 5.89 -4.98 -0.03 0.62 16 4 N -0.68 -5.79 5.72 -109.22 -0.62 -6.41 16 5 C 0.12 1.06 2.40 -68.87 -0.17 0.90 16 6 H 0.06 0.50 7.65 -51.93 -0.40 0.10 16 7 C 0.12 1.44 5.27 -4.04 -0.02 1.42 16 8 N -0.74 -9.48 4.98 -60.29 -0.30 -9.78 16 9 C 0.53 9.75 7.85 -10.99 -0.09 9.67 16 10 O -0.51 -11.56 15.86 5.55 0.09 -11.48 16 11 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 12 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 13 C -0.53 -15.16 9.50 30.94 0.29 -14.86 16 14 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 15 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 16 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 17 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.08 -0.71 4.70 -104.63 -0.49 -1.21 16 22 C -0.08 -0.79 9.16 -39.59 -0.36 -1.15 16 23 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 24 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 25 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 26 C -0.11 -1.00 9.67 -39.59 -0.38 -1.38 16 27 H 0.10 0.63 8.06 -52.48 -0.42 0.21 16 28 H 0.10 0.63 7.84 -52.49 -0.41 0.22 16 29 H 0.11 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.04 0.26 7.79 -51.93 -0.40 -0.15 16 31 H 0.08 0.65 7.96 -51.93 -0.41 0.24 16 32 H 0.35 3.06 6.76 -39.29 -0.27 2.80 16 33 H 0.08 1.03 7.98 -51.93 -0.41 0.61 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.39 3.90 7.40 -40.82 -0.30 3.60 16 36 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 37 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.13 1.27 7.89 -52.49 -0.41 0.86 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.12 0.87 8.00 -52.48 -0.42 0.45 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -33.72 381.69 -10.21 -43.92 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.37 Total: 4.43 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -2.25 Total: -13.57 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.19 Total: -41.57 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.72 -10.21 -43.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753295767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.108 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds