Wall clock time and date at job start Tue Mar 31 2020 13:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99780 * 2 1 4 4 N 1.46903 * 109.46997 * 125.00108 * 3 2 1 5 5 C 1.46899 * 111.00370 * 174.85535 * 4 3 2 6 6 H 1.09005 * 109.46626 * 33.84967 * 5 4 3 7 7 C 1.53001 * 109.47305 * 153.84726 * 5 4 3 8 8 N 1.46504 * 109.46884 * 305.00045 * 7 5 4 9 9 C 1.34775 * 119.99855 * 180.02562 * 8 7 5 10 10 O 1.21284 * 120.00067 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99882 * 179.97438 * 9 8 7 12 12 S 1.80999 * 109.47127 * 179.97438 * 11 9 8 13 13 C 1.76201 * 100.00097 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99898 * 0.02562 * 13 12 11 15 15 C 1.38806 * 119.99786 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99972 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99523 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47506 * 0.02562 * 17 15 13 19 19 H 1.48511 * 109.47197 * 120.00141 * 17 15 13 20 20 H 1.48500 * 109.47101 * 240.00057 * 17 15 13 21 21 C 1.50694 * 109.47240 * 273.84533 * 5 4 3 22 22 C 1.38236 * 120.00283 * 314.50270 * 21 5 4 23 23 C 1.38228 * 120.00165 * 179.80709 * 22 21 5 24 24 C 1.38240 * 120.00217 * 0.40039 * 23 22 21 25 25 C 1.38243 * 119.99423 * 359.84786 * 24 23 22 26 26 C 1.38229 * 120.00110 * 359.96335 * 25 24 23 27 27 H 1.08005 * 120.00182 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99993 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.99906 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47520 * 5.00304 * 3 2 1 31 31 H 1.08997 * 109.47785 * 244.99928 * 3 2 1 32 32 H 1.00902 * 111.00232 * 298.81409 * 4 3 2 33 33 H 1.08995 * 109.47189 * 65.00160 * 7 5 4 34 34 H 1.08997 * 109.47051 * 185.00385 * 7 5 4 35 35 H 0.97003 * 119.99935 * 359.97438 * 8 7 5 36 36 H 1.08995 * 109.47288 * 299.99836 * 11 9 8 37 37 H 1.09006 * 109.47086 * 59.99953 * 11 9 8 38 38 H 0.97001 * 119.99502 * 179.97438 * 16 15 13 39 39 H 1.08000 * 119.99611 * 359.97438 * 22 21 5 40 40 H 1.07998 * 120.00400 * 180.22552 * 23 22 21 41 41 H 1.07993 * 120.00559 * 179.83571 * 24 23 22 42 42 H 1.08003 * 119.99238 * 179.97438 * 25 24 23 43 43 H 1.08006 * 119.99745 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.8355 2.5370 1.0977 6 1 3.2609 3.3675 0.6873 7 6 4.2918 2.8843 2.5162 8 7 3.1213 3.0140 3.3877 9 6 3.2818 3.3187 4.6907 10 8 4.3952 3.4850 5.1419 11 6 2.0777 3.4527 5.5870 12 16 2.6175 3.8634 7.2651 13 6 1.0553 3.9565 8.0748 14 1 0.1472 3.7778 7.5183 15 6 0.9920 4.2595 9.4279 16 7 2.0988 4.4777 10.1060 17 14 -0.6642 4.3589 10.2861 18 1 -1.7459 4.0747 9.3091 19 1 -0.7140 3.3594 11.3834 20 1 -0.8495 5.7208 10.8482 21 6 5.0413 2.2831 0.2303 22 6 5.7548 1.1069 0.3655 23 6 6.8585 0.8722 -0.4329 24 6 7.2537 1.8175 -1.3610 25 6 6.5432 2.9960 -1.4927 26 6 5.4372 3.2289 -0.6969 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4027 -0.9313 32 1 2.5015 1.2625 2.0112 33 1 4.9397 2.0932 2.8934 34 1 4.8397 3.8265 2.5011 35 1 2.2308 2.8814 3.0266 36 1 1.4300 4.2438 5.2095 37 1 1.5296 2.5106 5.6023 38 1 2.0544 4.6898 11.0515 39 1 5.4482 0.3701 1.0932 40 1 7.4138 -0.0483 -0.3298 41 1 8.1176 1.6354 -1.9830 42 1 6.8523 3.7346 -2.2175 43 1 4.8824 4.1499 -0.7996 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753295767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:52 Heat of formation + Delta-G solvation = -11.587155 kcal Electronic energy + Delta-G solvation = -23274.964494 eV Core-core repulsion = 19831.724704 eV Total energy + Delta-G solvation = -3443.239790 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.02654 -40.13775 -38.10929 -35.89271 -34.58572 -34.18006 -31.87582 -31.64549 -31.22680 -28.61992 -27.63362 -25.57643 -24.32051 -23.35060 -21.84639 -21.41246 -20.67148 -19.87560 -18.13887 -17.70935 -17.36877 -17.03606 -16.88402 -16.73732 -16.28428 -16.10678 -15.69357 -15.13659 -14.99573 -14.82588 -14.52716 -14.44574 -14.21773 -14.14825 -13.72212 -13.61168 -13.33856 -13.15930 -12.91550 -12.78649 -12.66996 -12.59051 -12.01678 -11.82002 -11.78514 -11.70310 -11.15841 -11.02860 -10.35792 -10.27035 -10.23147 -9.74759 -9.61421 -9.52691 -8.66631 -8.34749 -6.12591 0.44845 0.58643 1.26570 1.35917 1.41626 1.46917 1.57549 1.57960 2.19612 2.27547 2.91542 2.99665 3.10392 3.31113 3.69724 3.91567 3.95322 3.96819 4.13915 4.21094 4.23461 4.25611 4.29822 4.37209 4.50074 4.52253 4.64268 4.69231 4.73712 4.79285 4.87539 5.07669 5.11752 5.23745 5.30216 5.42492 5.61156 5.64453 5.69833 5.74557 5.79679 6.02139 6.17052 6.20255 6.32980 6.38020 7.06849 7.17262 8.74719 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015969 B = 0.002524 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.003848 B =11089.682512 C =12437.462331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C 0.090 3.910 4 N -0.684 5.684 5 C 0.133 3.867 6 H 0.075 0.925 7 C 0.127 3.873 8 N -0.713 5.713 9 C 0.537 3.463 10 O -0.562 6.562 11 C -0.129 4.129 12 S -0.152 6.152 13 C -0.544 4.544 14 H 0.083 0.917 15 C 0.012 3.988 16 N -0.912 5.912 17 Si 0.999 3.001 18 H -0.256 1.256 19 H -0.275 1.275 20 H -0.274 1.274 21 C -0.087 4.087 22 C -0.096 4.096 23 C -0.137 4.137 24 C -0.125 4.125 25 C -0.131 4.131 26 C -0.122 4.122 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.347 0.653 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.412 0.588 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.271 0.729 39 H 0.121 0.879 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 -6.879 -28.262 29.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.178 4.178 3 C -0.038 4.038 4 N -0.318 5.318 5 C 0.023 3.977 6 H 0.093 0.907 7 C 0.003 3.997 8 N -0.369 5.369 9 C 0.323 3.677 10 O -0.440 6.440 11 C -0.280 4.280 12 S 0.075 5.925 13 C -0.692 4.692 14 H 0.102 0.898 15 C -0.193 4.193 16 N -0.548 5.548 17 Si 0.821 3.179 18 H -0.180 1.180 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.089 4.089 22 C -0.115 4.115 23 C -0.155 4.155 24 C -0.143 4.143 25 C -0.149 4.149 26 C -0.140 4.140 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.168 0.832 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.249 0.751 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.873 -6.953 -27.681 28.685 hybrid contribution -2.743 0.416 0.482 2.816 sum 0.130 -6.537 -27.199 27.974 Atomic orbital electron populations 1.24060 0.95784 1.02736 0.99646 1.22876 0.95748 0.98468 1.00714 1.21091 0.93382 0.94966 0.94404 1.60332 1.26128 1.38854 1.06449 1.20463 0.92905 0.92124 0.92192 0.90710 1.21490 0.88011 1.01791 0.88403 1.45715 1.10763 1.72419 1.07972 1.20063 0.89681 0.75320 0.82674 1.90710 1.27618 1.50347 1.75278 1.23368 0.99562 1.06622 0.98489 1.85618 1.13975 1.91927 1.00934 1.23229 0.92880 1.55403 0.97656 0.89841 1.26137 1.02050 0.93870 0.97210 1.70190 1.29586 1.45629 1.09412 0.84900 0.76942 0.78068 0.77998 1.17961 1.19995 1.19982 1.19663 0.96542 0.95283 0.97368 1.21095 0.94549 0.96934 0.98910 1.21430 0.97236 1.00261 0.96542 1.21467 1.00253 0.94095 0.98533 1.21386 0.95580 0.97981 0.99908 1.21278 0.97809 0.99145 0.95783 0.87621 0.87929 0.87338 0.93536 0.90440 0.83209 0.91889 0.91447 0.75115 0.87094 0.86999 0.92012 0.86088 0.85002 0.84398 0.84244 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 14.32 67.78 0.97 -1.28 16 2 C -0.16 -2.20 9.82 25.65 0.25 -1.94 16 3 C 0.09 1.20 5.89 85.56 0.50 1.71 16 4 N -0.68 -10.65 5.72 -499.47 -2.86 -13.50 16 5 C 0.13 2.20 2.40 44.17 0.11 2.30 16 6 H 0.08 1.05 7.65 -2.38 -0.02 1.03 16 7 C 0.13 2.89 5.27 86.38 0.46 3.34 16 8 N -0.71 -17.18 4.98 -463.06 -2.31 -19.48 16 9 C 0.54 19.35 7.85 87.66 0.69 20.04 16 10 O -0.56 -25.94 15.86 -3.04 -0.05 -25.99 16 11 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 12 S -0.15 -8.36 20.57 -56.49 -1.16 -9.53 16 13 C -0.54 -30.78 9.50 67.96 0.65 -30.13 16 14 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 15 C 0.01 0.68 5.49 84.86 0.47 1.15 16 16 N -0.91 -55.94 13.22 21.65 0.29 -55.65 16 17 Si 1.00 43.36 29.55 68.60 2.03 45.39 16 18 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 21 C -0.09 -1.56 4.70 -19.87 -0.09 -1.65 16 22 C -0.10 -1.84 9.16 22.27 0.20 -1.64 16 23 C -0.14 -2.31 10.05 22.27 0.22 -2.08 16 24 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 25 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 26 C -0.12 -1.94 9.67 22.27 0.22 -1.72 16 27 H 0.11 1.14 8.06 -2.91 -0.02 1.12 16 28 H 0.10 1.10 7.84 -2.91 -0.02 1.07 16 29 H 0.11 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.05 0.54 7.79 -2.39 -0.02 0.52 16 31 H 0.08 1.12 7.96 -2.39 -0.02 1.10 16 32 H 0.35 5.48 6.76 -89.69 -0.61 4.87 16 33 H 0.06 1.67 7.98 -2.39 -0.02 1.65 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.41 7.07 7.40 -92.71 -0.69 6.38 16 36 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 37 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 38 H 0.27 15.39 8.31 -92.71 -0.77 14.61 16 39 H 0.12 2.43 7.89 -2.91 -0.02 2.40 16 40 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 43 H 0.13 1.66 8.00 -2.91 -0.02 1.63 16 Total: -1.00 -74.95 381.69 1.18 -73.76 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -0.28 Total: 24.79 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 5.52 Total: -19.80 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -4.87 Total: -88.64 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.05 Total: -25.99 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.53 kcal Total: -74.95 1.18 -73.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753295767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.178 kcal (2) G-P(sol) polarization free energy of solvation -74.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds