Wall clock time and date at job start Tue Mar 31 2020 12:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38432 * 122.53922 * 2 1 4 4 C 1.33388 * 114.92285 * 180.02562 * 3 2 1 5 5 S 1.75888 * 109.59223 * 359.76298 * 4 3 2 6 6 C 1.33388 * 122.54017 * 180.02562 * 2 1 3 7 7 C 1.50698 * 125.20512 * 359.95294 * 6 2 1 8 8 H 1.08993 * 115.55980 * 334.31578 * 7 6 2 9 9 C 1.53003 * 117.49907 * 188.61923 * 7 6 2 10 10 C 1.53001 * 60.00201 * 252.51496 * 9 7 6 11 11 H 1.08999 * 117.49714 * 107.51213 * 10 9 7 12 12 C 1.50698 * 117.49993 * 252.51431 * 10 9 7 13 13 O 1.21284 * 119.99887 * 68.60507 * 12 10 9 14 14 N 1.34777 * 119.99745 * 248.61161 * 12 10 9 15 15 C 1.46498 * 119.99523 * 179.97438 * 14 12 10 16 16 C 1.50706 * 109.46837 * 179.97438 * 15 14 12 17 17 C 1.31002 * 119.99727 * 127.11294 * 16 15 14 18 18 C 1.50695 * 120.00477 * 7.54674 * 17 16 15 19 19 N 1.46506 * 109.47452 * 127.09855 * 18 17 16 20 20 C 1.36933 * 120.00104 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99846 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00005 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00046 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00068 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46564 * 90.00334 * 24 22 20 26 26 H 1.48494 * 109.47501 * 210.00056 * 24 22 20 27 27 H 1.48498 * 109.47216 * 330.00871 * 24 22 20 28 28 H 1.09000 * 109.47018 * 269.97590 * 1 2 3 29 29 H 1.09005 * 109.47582 * 29.97426 * 1 2 3 30 30 H 1.09000 * 109.47480 * 149.97663 * 1 2 3 31 31 H 1.07998 * 122.53361 * 0.04881 * 3 2 1 32 32 H 1.07993 * 125.20775 * 179.97438 * 4 3 2 33 33 H 1.08997 * 117.49190 * 145.02376 * 9 7 6 34 34 H 1.08999 * 117.51956 * 359.97438 * 9 7 6 35 35 H 0.96998 * 120.00447 * 359.97438 * 14 12 10 36 36 H 1.08996 * 109.47700 * 60.00243 * 15 14 12 37 37 H 1.09002 * 109.47768 * 299.99301 * 15 14 12 38 38 H 1.07996 * 120.00231 * 307.39114 * 16 15 14 39 39 H 1.08001 * 119.99679 * 187.54651 * 17 16 15 40 40 H 1.08999 * 109.47184 * 247.10571 * 18 17 16 41 41 H 1.09004 * 109.46888 * 7.10110 * 18 17 16 42 42 H 0.96998 * 119.99454 * 0.02562 * 19 18 17 43 43 H 0.97000 * 120.00201 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5736 0.9902 -0.0005 5 16 3.9386 -0.7304 0.0058 6 6 2.2244 -1.1245 -0.0005 7 6 1.6537 -2.5192 -0.0001 8 1 0.6558 -2.6188 0.4267 9 6 2.6281 -3.6812 0.2026 10 6 2.0134 -3.4300 -1.1758 11 1 2.6630 -3.0207 -1.9495 12 6 0.9608 -4.3962 -1.6548 13 8 -0.1229 -4.4308 -1.1114 14 7 1.2238 -5.2218 -2.6871 15 6 0.2007 -6.1615 -3.1524 16 6 0.7426 -6.9622 -4.3084 17 6 0.6942 -8.2710 -4.2784 18 6 -0.0525 -8.9723 -3.1732 19 7 -1.0102 -9.9169 -3.7537 20 6 -1.8073 -10.6730 -2.9363 21 1 -1.7302 -10.5727 -1.8637 22 6 -2.7143 -11.5683 -3.4863 23 7 -3.4808 -12.2946 -2.7006 24 14 -2.8482 -11.7412 -5.3414 25 1 -1.9074 -12.7904 -5.8098 26 1 -4.2364 -12.1236 -5.7041 27 1 -2.5069 -10.4472 -5.9851 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 1.7963 2.1464 0.0008 32 1 4.3077 1.7823 -0.0010 33 1 2.2712 -4.5453 0.7629 34 1 3.6822 -3.4373 0.3353 35 1 2.0904 -5.1940 -3.1219 36 1 -0.6809 -5.6081 -3.4759 37 1 -0.0711 -6.8348 -2.3395 38 1 1.1749 -6.4572 -5.1595 39 1 1.1895 -8.8474 -5.0458 40 1 0.6542 -9.5124 -2.5431 41 1 -0.5867 -8.2366 -2.5719 42 1 -1.0797 -10.0066 -4.7170 43 1 -4.1144 -12.9206 -3.0849 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754119040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:58 Heat of formation + Delta-G solvation = 55.414079 kcal Electronic energy + Delta-G solvation = -22811.852564 eV Core-core repulsion = 19371.518166 eV Total energy + Delta-G solvation = -3440.334398 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.25483 -38.79442 -37.10280 -36.26363 -34.62585 -32.86491 -31.21946 -30.85648 -28.23710 -27.12879 -25.38904 -23.82428 -23.54808 -22.07785 -21.90260 -20.36194 -19.09895 -18.87824 -17.63948 -17.54024 -16.78640 -16.31731 -15.63680 -15.59859 -14.89074 -14.51385 -14.32268 -14.23824 -13.98091 -13.79294 -13.48943 -13.11836 -12.87506 -12.74839 -12.61052 -12.52467 -12.39393 -12.25114 -11.98575 -11.88391 -11.28997 -11.22120 -11.00739 -10.86999 -10.82707 -10.54666 -10.13511 -10.04408 -9.60604 -9.29585 -9.09084 -8.85244 -8.68181 -8.63750 -7.23349 -5.77106 -3.13479 0.58260 1.24966 1.62936 2.10613 2.23963 2.44623 3.19851 3.37469 3.39988 3.45282 3.57854 4.16178 4.33783 4.48232 4.58669 4.58749 4.76890 4.83747 4.92217 5.05499 5.14097 5.17053 5.22477 5.31282 5.39383 5.51038 5.54501 5.56658 5.62497 5.63019 5.70489 5.77846 5.78669 6.05139 6.11997 6.18937 6.23342 6.42431 6.46744 6.74442 7.00113 7.42107 7.98343 8.13864 8.41370 9.19741 9.91656 10.11165 11.41019 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.029155 B = 0.001905 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.165491 B =14696.284757 C =14963.663132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.099 4.099 3 C -0.128 4.128 4 C -0.215 4.215 5 S 0.094 5.906 6 C -0.150 4.150 7 C -0.051 4.051 8 H 0.138 0.862 9 C -0.143 4.143 10 C -0.176 4.176 11 H 0.125 0.875 12 C 0.540 3.460 13 O -0.535 6.535 14 N -0.718 5.718 15 C 0.139 3.861 16 C -0.193 4.193 17 C -0.118 4.118 18 C 0.166 3.834 19 N -0.751 5.751 20 C -0.246 4.246 21 H 0.091 0.909 22 C 0.005 3.995 23 N -0.932 5.932 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.277 1.277 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.140 0.860 32 H 0.164 0.836 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.400 0.600 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.362 0.638 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.222 28.583 3.183 34.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.158 4.158 4 C -0.350 4.350 5 S 0.360 5.640 6 C -0.267 4.267 7 C -0.072 4.072 8 H 0.156 0.844 9 C -0.181 4.181 10 C -0.197 4.197 11 H 0.143 0.857 12 C 0.326 3.674 13 O -0.412 6.412 14 N -0.369 5.369 15 C 0.017 3.983 16 C -0.213 4.213 17 C -0.137 4.137 18 C 0.040 3.960 19 N -0.397 5.397 20 C -0.376 4.376 21 H 0.109 0.891 22 C -0.191 4.191 23 N -0.580 5.580 24 Si 0.716 3.284 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.203 1.203 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.158 0.842 32 H 0.181 0.819 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.234 0.766 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.195 0.805 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.682 27.616 3.795 33.557 hybrid contribution -0.877 0.711 -1.790 2.116 sum 17.805 28.327 2.006 33.518 Atomic orbital electron populations 1.20565 0.89469 1.03163 1.02539 1.18858 0.97726 0.91346 1.03143 1.20069 0.92843 0.99290 1.03617 1.25576 0.99773 0.98965 1.10728 1.84172 1.05570 1.00661 1.73637 1.23534 0.95405 0.96898 1.10824 1.20451 1.00759 0.85366 1.00597 0.84441 1.23151 0.98776 1.00161 0.95978 1.22402 1.01930 1.01703 0.93706 0.85701 1.19508 0.87625 0.80500 0.79792 1.90740 1.24552 1.69367 1.56534 1.45918 1.17987 1.38575 1.34442 1.20598 0.90284 0.91178 0.96288 1.22632 1.04893 0.95056 0.98694 1.23318 0.95843 0.95235 0.99352 1.19976 0.91222 0.91952 0.92873 1.42617 1.44884 1.47259 1.04897 1.19065 1.12818 1.14146 0.91581 0.89107 1.24681 0.98436 0.98741 0.97263 1.69703 1.26453 1.28294 1.33551 0.86524 0.77196 0.77688 0.86996 1.21049 1.21651 1.20302 0.91050 0.91507 0.90896 0.84237 0.81877 0.86938 0.87682 0.76608 0.90937 0.89101 0.86959 0.86889 0.94525 0.93914 0.80549 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 9.72 36.00 0.35 -0.41 16 2 C -0.10 -0.85 5.80 -106.25 -0.62 -1.47 16 3 C -0.13 -0.95 9.98 -41.20 -0.41 -1.36 16 4 C -0.22 -1.48 11.23 29.04 0.33 -1.16 16 5 S 0.09 0.70 22.16 -107.50 -2.38 -1.68 16 6 C -0.15 -1.33 6.13 -36.00 -0.22 -1.55 16 7 C -0.05 -0.48 4.98 -91.77 -0.46 -0.94 16 8 H 0.14 1.46 7.06 -51.93 -0.37 1.09 16 9 C -0.14 -1.16 9.75 -26.73 -0.26 -1.42 16 10 C -0.18 -1.59 5.89 -91.77 -0.54 -2.13 16 11 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 12 C 0.54 6.66 7.61 -10.99 -0.08 6.58 16 13 O -0.54 -8.85 16.26 5.55 0.09 -8.76 16 14 N -0.72 -7.84 5.55 -61.47 -0.34 -8.18 16 15 C 0.14 1.87 5.76 -5.19 -0.03 1.84 16 16 C -0.19 -2.41 9.63 -36.02 -0.35 -2.76 16 17 C -0.12 -1.75 9.63 -36.03 -0.35 -2.10 16 18 C 0.17 3.22 6.35 -5.19 -0.03 3.18 16 19 N -0.75 -18.14 5.40 -61.09 -0.33 -18.47 16 20 C -0.25 -7.11 10.47 -15.06 -0.16 -7.27 16 21 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 22 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 23 N -0.93 -29.62 13.97 55.49 0.78 -28.85 16 24 Si 0.89 22.27 27.74 -169.99 -4.71 17.56 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.07 0.64 7.24 -51.93 -0.38 0.27 16 31 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 0.70 7.27 -51.93 -0.38 0.32 16 35 H 0.40 3.14 8.46 -40.82 -0.35 2.80 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.44 5.30 -51.93 -0.28 1.16 16 38 H 0.11 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.04 0.85 5.30 -51.93 -0.28 0.58 16 42 H 0.36 8.47 5.52 -40.82 -0.23 8.24 16 43 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -34.34 373.82 -10.25 -44.60 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.06 Total: 9.07 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.92 Total: -10.92 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.10 Total: -55.50 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.38 Total: -1.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.34 -10.25 -44.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754119040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.011 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds