Wall clock time and date at job start Tue Mar 31 2020 12:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38432 * 122.53922 * 2 1 4 4 C 1.33388 * 114.92285 * 180.02562 * 3 2 1 5 5 S 1.75888 * 109.59223 * 359.76298 * 4 3 2 6 6 C 1.33388 * 122.54017 * 180.02562 * 2 1 3 7 7 C 1.50698 * 125.20512 * 359.95294 * 6 2 1 8 8 H 1.08993 * 115.55980 * 334.31578 * 7 6 2 9 9 C 1.53003 * 117.49907 * 188.61923 * 7 6 2 10 10 C 1.53001 * 60.00201 * 252.51496 * 9 7 6 11 11 H 1.08999 * 117.49714 * 107.51213 * 10 9 7 12 12 C 1.50698 * 117.49993 * 252.51431 * 10 9 7 13 13 O 1.21284 * 119.99887 * 68.60507 * 12 10 9 14 14 N 1.34777 * 119.99745 * 248.61161 * 12 10 9 15 15 C 1.46498 * 119.99523 * 179.97438 * 14 12 10 16 16 C 1.50706 * 109.46837 * 179.97438 * 15 14 12 17 17 C 1.31002 * 119.99727 * 127.11294 * 16 15 14 18 18 C 1.50695 * 120.00477 * 7.54674 * 17 16 15 19 19 N 1.46506 * 109.47452 * 127.09855 * 18 17 16 20 20 C 1.36933 * 120.00104 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99846 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00005 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00046 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00068 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46564 * 90.00334 * 24 22 20 26 26 H 1.48494 * 109.47501 * 210.00056 * 24 22 20 27 27 H 1.48498 * 109.47216 * 330.00871 * 24 22 20 28 28 H 1.09000 * 109.47018 * 269.97590 * 1 2 3 29 29 H 1.09005 * 109.47582 * 29.97426 * 1 2 3 30 30 H 1.09000 * 109.47480 * 149.97663 * 1 2 3 31 31 H 1.07998 * 122.53361 * 0.04881 * 3 2 1 32 32 H 1.07993 * 125.20775 * 179.97438 * 4 3 2 33 33 H 1.08997 * 117.49190 * 145.02376 * 9 7 6 34 34 H 1.08999 * 117.51956 * 359.97438 * 9 7 6 35 35 H 0.96998 * 120.00447 * 359.97438 * 14 12 10 36 36 H 1.08996 * 109.47700 * 60.00243 * 15 14 12 37 37 H 1.09002 * 109.47768 * 299.99301 * 15 14 12 38 38 H 1.07996 * 120.00231 * 307.39114 * 16 15 14 39 39 H 1.08001 * 119.99679 * 187.54651 * 17 16 15 40 40 H 1.08999 * 109.47184 * 247.10571 * 18 17 16 41 41 H 1.09004 * 109.46888 * 7.10110 * 18 17 16 42 42 H 0.96998 * 119.99454 * 0.02562 * 19 18 17 43 43 H 0.97000 * 120.00201 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5736 0.9902 -0.0005 5 16 3.9386 -0.7304 0.0058 6 6 2.2244 -1.1245 -0.0005 7 6 1.6537 -2.5192 -0.0001 8 1 0.6558 -2.6188 0.4267 9 6 2.6281 -3.6812 0.2026 10 6 2.0134 -3.4300 -1.1758 11 1 2.6630 -3.0207 -1.9495 12 6 0.9608 -4.3962 -1.6548 13 8 -0.1229 -4.4308 -1.1114 14 7 1.2238 -5.2218 -2.6871 15 6 0.2007 -6.1615 -3.1524 16 6 0.7426 -6.9622 -4.3084 17 6 0.6942 -8.2710 -4.2784 18 6 -0.0525 -8.9723 -3.1732 19 7 -1.0102 -9.9169 -3.7537 20 6 -1.8073 -10.6730 -2.9363 21 1 -1.7302 -10.5727 -1.8637 22 6 -2.7143 -11.5683 -3.4863 23 7 -3.4808 -12.2946 -2.7006 24 14 -2.8482 -11.7412 -5.3414 25 1 -1.9074 -12.7904 -5.8098 26 1 -4.2364 -12.1236 -5.7041 27 1 -2.5069 -10.4472 -5.9851 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 1.7963 2.1464 0.0008 32 1 4.3077 1.7823 -0.0010 33 1 2.2712 -4.5453 0.7629 34 1 3.6822 -3.4373 0.3353 35 1 2.0904 -5.1940 -3.1219 36 1 -0.6809 -5.6081 -3.4759 37 1 -0.0711 -6.8348 -2.3395 38 1 1.1749 -6.4572 -5.1595 39 1 1.1895 -8.8474 -5.0458 40 1 0.6542 -9.5124 -2.5431 41 1 -0.5867 -8.2366 -2.5719 42 1 -1.0797 -10.0066 -4.7170 43 1 -4.1144 -12.9206 -3.0849 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754119040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:58 Heat of formation + Delta-G solvation = 33.161195 kcal Electronic energy + Delta-G solvation = -22812.817522 eV Core-core repulsion = 19371.518166 eV Total energy + Delta-G solvation = -3441.299356 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.19232 -39.47722 -38.21913 -37.27701 -36.15297 -34.43349 -32.82096 -31.77393 -29.07080 -28.30644 -26.85377 -24.58566 -24.30361 -24.04915 -22.53565 -21.36838 -20.45831 -19.69743 -19.14683 -18.23249 -17.82217 -17.49938 -16.74312 -16.41369 -16.31247 -15.88090 -15.47074 -15.18887 -14.93763 -14.85580 -14.79566 -14.31814 -14.21761 -14.08224 -13.60699 -13.47175 -13.23191 -13.06947 -12.99311 -12.83957 -12.74986 -12.51115 -12.21802 -11.92064 -11.87733 -11.72251 -11.64630 -11.48292 -11.12031 -11.04296 -10.37880 -9.99093 -9.42548 -9.28373 -9.21796 -8.05648 -5.40783 -0.00104 0.68289 1.00446 1.06724 1.36816 1.40257 1.41716 1.49346 1.74253 2.25956 2.46866 2.83199 3.25210 3.46033 3.58224 3.72942 3.77730 3.83838 4.02205 4.08193 4.10977 4.16778 4.30322 4.50119 4.56740 4.57913 4.62587 4.70658 4.78418 4.81138 4.87511 4.89719 4.98088 5.04515 5.11845 5.16875 5.34730 5.53717 5.53995 5.60985 5.69133 5.84520 6.17842 6.52273 7.04139 7.20426 7.78227 7.99859 9.15749 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.029155 B = 0.001905 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.165491 B =14696.284757 C =14963.663132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.110 4.110 3 C -0.140 4.140 4 C -0.211 4.211 5 S 0.109 5.891 6 C -0.170 4.170 7 C -0.057 4.057 8 H 0.115 0.885 9 C -0.131 4.131 10 C -0.169 4.169 11 H 0.151 0.849 12 C 0.536 3.464 13 O -0.585 6.585 14 N -0.703 5.703 15 C 0.136 3.864 16 C -0.154 4.154 17 C -0.138 4.138 18 C 0.162 3.838 19 N -0.753 5.753 20 C -0.243 4.243 21 H 0.052 0.948 22 C -0.066 4.066 23 N -0.983 5.983 24 Si 0.963 3.037 25 H -0.273 1.273 26 H -0.295 1.295 27 H -0.249 1.249 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.157 0.843 32 H 0.188 0.812 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.419 0.581 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.155 0.845 39 H 0.136 0.864 40 H 0.029 0.971 41 H 0.033 0.967 42 H 0.369 0.631 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.935 30.812 0.617 37.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.170 4.170 4 C -0.347 4.347 5 S 0.374 5.626 6 C -0.286 4.286 7 C -0.078 4.078 8 H 0.133 0.867 9 C -0.169 4.169 10 C -0.191 4.191 11 H 0.169 0.831 12 C 0.323 3.677 13 O -0.466 6.466 14 N -0.355 5.355 15 C 0.013 3.987 16 C -0.173 4.173 17 C -0.157 4.157 18 C 0.036 3.964 19 N -0.399 5.399 20 C -0.374 4.374 21 H 0.070 0.930 22 C -0.258 4.258 23 N -0.633 5.633 24 Si 0.789 3.211 25 H -0.199 1.199 26 H -0.221 1.221 27 H -0.174 1.174 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.174 0.826 32 H 0.205 0.795 33 H 0.122 0.878 34 H 0.144 0.856 35 H 0.257 0.743 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.173 0.827 39 H 0.154 0.846 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.203 0.797 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 21.476 29.882 1.206 36.818 hybrid contribution -1.693 0.131 -0.828 1.889 sum 19.783 30.013 0.378 35.948 Atomic orbital electron populations 1.20548 0.89527 1.02888 1.02641 1.19109 0.98069 0.92004 1.03090 1.20255 0.93142 0.99603 1.04034 1.25945 1.00118 0.99233 1.09357 1.84043 1.03999 1.01190 1.73362 1.23555 0.96640 0.96457 1.11977 1.20321 1.00245 0.86384 1.00859 0.86702 1.23206 0.99556 0.99252 0.94842 1.22365 1.01237 1.00902 0.94551 0.83150 1.20107 0.87599 0.80628 0.79341 1.90722 1.26864 1.70858 1.58122 1.45731 1.18276 1.37422 1.34039 1.20428 0.91035 0.91199 0.96016 1.22831 1.01997 0.94007 0.98468 1.23070 0.97725 0.95909 0.98986 1.20063 0.90534 0.91084 0.94684 1.42595 1.45003 1.47515 1.04800 1.19030 1.13241 1.14497 0.90615 0.93037 1.25624 0.98280 0.98632 1.03244 1.69903 1.27691 1.29531 1.36211 0.85294 0.76930 0.78974 0.79883 1.19890 1.22140 1.17385 0.90805 0.90209 0.92658 0.82552 0.79479 0.87763 0.85603 0.74324 0.91895 0.92131 0.82737 0.84645 0.95300 0.94919 0.79745 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.51 9.72 71.23 0.69 -0.82 16 2 C -0.11 -1.82 5.80 -20.92 -0.12 -1.95 16 3 C -0.14 -1.83 9.98 21.22 0.21 -1.62 16 4 C -0.21 -2.38 11.23 66.72 0.75 -1.63 16 5 S 0.11 1.38 22.16 -56.49 -1.25 0.13 16 6 C -0.17 -2.86 6.13 24.59 0.15 -2.71 16 7 C -0.06 -1.07 4.98 -11.54 -0.06 -1.13 16 8 H 0.12 2.66 7.06 -2.39 -0.02 2.64 16 9 C -0.13 -2.01 9.75 30.60 0.30 -1.71 16 10 C -0.17 -2.87 5.89 -11.54 -0.07 -2.94 16 11 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 12 C 0.54 13.13 7.61 87.66 0.67 13.80 16 13 O -0.59 -20.28 16.26 -3.04 -0.05 -20.33 16 14 N -0.70 -14.30 5.55 -466.78 -2.59 -16.89 16 15 C 0.14 3.56 5.76 85.64 0.49 4.05 16 16 C -0.15 -3.33 9.63 25.65 0.25 -3.09 16 17 C -0.14 -3.74 9.63 25.64 0.25 -3.50 16 18 C 0.16 6.28 6.35 85.63 0.54 6.82 16 19 N -0.75 -36.22 5.40 -347.17 -1.87 -38.09 16 20 C -0.24 -14.43 10.47 84.03 0.88 -13.55 16 21 H 0.05 3.38 8.06 -2.91 -0.02 3.35 16 22 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 23 N -0.98 -64.50 13.97 21.65 0.30 -64.19 16 24 Si 0.96 45.89 27.74 68.60 1.90 47.79 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 27 H -0.25 -10.65 6.52 99.48 0.65 -10.00 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 0.99 8.13 -2.38 -0.02 0.97 16 30 H 0.05 1.04 7.24 -2.39 -0.02 1.03 16 31 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 32 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.13 1.41 7.27 -2.39 -0.02 1.39 16 35 H 0.42 5.29 8.46 -92.71 -0.78 4.50 16 36 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.06 1.98 5.30 -2.39 -0.01 1.97 16 38 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 39 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 40 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.03 1.36 5.30 -2.39 -0.01 1.34 16 42 H 0.37 16.53 5.52 -92.71 -0.51 16.02 16 43 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -78.10 373.82 1.52 -76.57 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.32 Total: 28.53 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 5.40 Total: -13.52 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -4.16 Total: -119.17 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.05 Total: -20.33 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.79 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -1.25 Total: 0.13 kcal Total: -78.10 1.52 -76.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754119040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.735 kcal (2) G-P(sol) polarization free energy of solvation -78.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds