Wall clock time and date at job start Tue Mar 31 2020 12:15:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.35898 * 117.00084 * 2 1
4 4 C 1.38796 * 120.07903 * 0.02562 * 3 2 1
5 5 C 1.37998 * 119.92368 * 179.89736 * 4 3 2
6 6 C 1.38562 * 120.39446 * 0.03079 * 5 4 3
7 7 C 1.38424 * 119.90967 * 0.12247 * 6 5 4
8 8 C 1.38451 * 120.08063 * 180.02562 * 3 2 1
9 9 O 1.35876 * 121.80983 * 179.51741 * 7 6 5
10 10 C 1.42820 * 117.84402 * 17.24655 * 9 7 6
11 11 C 1.53414 * 108.39870 * 310.81338 * 10 9 7
12 12 H 1.08996 * 109.69450 * 304.97028 * 11 10 9
13 13 C 1.50700 * 109.69296 * 184.41535 * 11 10 9
14 14 O 1.20823 * 119.99979 * 239.99538 * 13 11 10
15 15 O 1.34225 * 119.99997 * 60.00461 * 13 11 10
16 16 C 1.45200 * 117.00222 * 179.97438 * 15 13 11
17 17 C 1.52994 * 109.47371 * 180.02562 * 16 15 13
18 18 C 1.52997 * 109.47213 * 180.02562 * 17 16 15
19 19 C 1.50703 * 109.47334 * 179.97438 * 18 17 16
20 20 H 1.08006 * 119.99770 * 0.02562 * 19 18 17
21 21 C 1.37872 * 120.00484 * 179.97438 * 19 18 17
22 22 N 1.31522 * 119.99713 * 359.97438 * 21 19 18
23 23 Si 1.86800 * 120.00619 * 180.02562 * 21 19 18
24 24 H 1.48501 * 109.46920 * 89.99683 * 23 21 19
25 25 H 1.48497 * 109.47366 * 210.00547 * 23 21 19
26 26 H 1.48502 * 109.46742 * 330.00343 * 23 21 19
27 27 C 1.50792 * 118.70530 * 180.16860 * 6 5 4
28 28 H 1.09003 * 109.47364 * 299.99845 * 1 2 3
29 29 H 1.08999 * 109.47109 * 59.99892 * 1 2 3
30 30 H 1.09008 * 109.47253 * 180.02562 * 1 2 3
31 31 H 1.07997 * 120.03456 * 359.86699 * 4 3 2
32 32 H 1.07998 * 119.80560 * 180.02562 * 5 4 3
33 33 H 1.08001 * 119.91479 * 0.02562 * 8 3 2
34 34 H 1.09002 * 109.68507 * 191.07591 * 10 9 7
35 35 H 1.09002 * 109.68405 * 70.55043 * 10 9 7
36 36 H 1.09004 * 109.47179 * 299.99942 * 16 15 13
37 37 H 1.08998 * 109.46916 * 59.99566 * 16 15 13
38 38 H 1.09007 * 109.47208 * 299.99971 * 17 16 15
39 39 H 1.08998 * 109.47659 * 59.99771 * 17 16 15
40 40 H 1.09004 * 109.47115 * 299.99556 * 18 17 16
41 41 H 1.08995 * 109.47378 * 59.99742 * 18 17 16
42 42 H 0.97001 * 119.99747 * 179.97438 * 22 21 19
43 43 H 1.09003 * 109.42963 * 77.73343 * 27 6 5
44 44 H 1.09000 * 109.43820 * 317.86960 * 27 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2109 0.0000
4 6 1.2916 2.3759 0.0005
5 6 1.9215 3.6038 0.0027
6 6 3.3049 3.6821 0.0037
7 6 4.0618 2.5231 -0.0001
8 6 3.4285 1.2852 -0.0005
9 8 5.4202 2.5549 -0.0090
10 6 6.0613 3.7766 0.3599
11 6 5.4141 4.9210 -0.4306
12 1 5.4597 4.7023 -1.4974
13 6 6.1405 6.2100 -0.1447
14 8 5.5466 7.1432 0.3414
15 8 7.4473 6.3215 -0.4304
16 6 8.0819 7.5922 -0.1289
17 6 9.5595 7.5300 -0.5207
18 6 10.2283 8.8687 -0.2024
19 6 11.6840 8.8073 -0.5878
20 1 12.0912 7.9038 -1.0171
21 6 12.4956 9.9047 -0.3932
22 7 11.9994 11.0054 0.1283
23 14 14.2998 9.8288 -0.8714
24 1 14.4576 10.2727 -2.2797
25 1 15.0860 10.7194 0.0195
26 1 14.7898 8.4337 -0.7344
27 6 3.9533 5.0435 0.0099
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3634 -1.0277 0.0005
31 1 0.2130 2.3216 -0.0012
32 1 1.3327 4.5092 0.0035
33 1 4.0166 0.3794 -0.0014
34 1 7.1234 3.7204 0.1215
35 1 5.9335 3.9501 1.4284
36 1 7.5905 8.3863 -0.6912
37 1 7.9968 7.7966 0.9384
38 1 10.0513 6.7359 0.0413
39 1 9.6442 7.3258 -1.5880
40 1 9.7367 9.6631 -0.7641
41 1 10.1437 9.0725 0.8650
42 1 12.5705 11.7773 0.2656
43 1 3.9116 5.4604 1.0162
44 1 3.4214 5.7017 -0.6770
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000064690607.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:15:13
Heat of formation + Delta-G solvation = -172.636421 kcal
Electronic energy + Delta-G solvation = -25627.344243 eV
Core-core repulsion = 21702.075211 eV
Total energy + Delta-G solvation = -3925.269032 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-42.26782 -41.34541 -40.23311 -38.01114 -37.55170 -35.94733 -35.31474 -33.67544
-31.63715 -31.35958 -29.08644 -28.23008 -26.68012 -25.97931 -24.72925 -23.75268
-22.38896 -22.16542 -20.82614 -19.62012 -18.99045 -18.58067 -18.09062 -17.79159
-17.33146 -17.14535 -16.68162 -16.49341 -16.20072 -16.17814 -15.77928 -15.53594
-15.01443 -14.67501 -14.50949 -14.33976 -14.12104 -14.03407 -13.77919 -13.72570
-13.28611 -12.88569 -12.83173 -12.64031 -12.51465 -12.42936 -12.21284 -12.11936
-12.06872 -11.86729 -11.58957 -11.55132 -11.41828 -11.38450 -11.21815 -10.56973
-9.55383 -9.03396 -8.21742 -6.33105 0.30408 0.32120 0.98995 1.41329
1.43122 1.46486 1.54814 1.91331 2.41470 2.58588 2.70978 3.12374
3.24548 3.41093 3.52483 3.75585 3.91248 3.95378 4.00348 4.04517
4.09606 4.14284 4.35080 4.40614 4.41465 4.43275 4.48495 4.55564
4.71682 4.78316 4.80332 4.86618 4.88772 4.91586 5.08091 5.13188
5.24634 5.36323 5.42516 5.46893 5.50954 5.64317 5.80536 6.19239
6.26596 6.41852 6.57149 6.82945 7.36562 8.90257
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.042839 B = 0.001815 C = 0.001753
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 653.447153 B =15419.824202 C =15967.209755
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 O -0.334 6.334
3 C 0.151 3.849
4 C -0.232 4.232
5 C -0.042 4.042
6 C -0.199 4.199
7 C 0.152 3.848
8 C -0.201 4.201
9 O -0.312 6.312
10 C 0.074 3.926
11 C -0.111 4.111
12 H 0.137 0.863
13 C 0.471 3.529
14 O -0.529 6.529
15 O -0.353 6.353
16 C 0.078 3.922
17 C -0.095 4.095
18 C 0.025 3.975
19 C -0.544 4.544
20 H 0.065 0.935
21 C 0.000 4.000
22 N -0.933 5.933
23 Si 0.968 3.032
24 H -0.272 1.272
25 H -0.283 1.283
26 H -0.262 1.262
27 C -0.054 4.054
28 H 0.067 0.933
29 H 0.068 0.932
30 H 0.118 0.882
31 H 0.157 0.843
32 H 0.153 0.847
33 H 0.136 0.864
34 H 0.137 0.863
35 H 0.078 0.922
36 H 0.064 0.936
37 H 0.066 0.934
38 H 0.068 0.932
39 H 0.067 0.933
40 H -0.003 1.003
41 H -0.002 1.002
42 H 0.264 0.736
43 H 0.084 0.916
44 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.368 -21.623 -0.613 33.339
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 O -0.247 6.247
3 C 0.106 3.894
4 C -0.251 4.251
5 C -0.060 4.060
6 C -0.200 4.200
7 C 0.107 3.893
8 C -0.220 4.220
9 O -0.226 6.226
10 C -0.001 4.001
11 C -0.130 4.130
12 H 0.155 0.845
13 C 0.314 3.686
14 O -0.418 6.418
15 O -0.269 6.269
16 C 0.004 3.996
17 C -0.132 4.132
18 C -0.013 4.013
19 C -0.582 4.582
20 H 0.083 0.917
21 C -0.198 4.198
22 N -0.573 5.573
23 Si 0.792 3.208
24 H -0.198 1.198
25 H -0.209 1.209
26 H -0.186 1.186
27 C -0.091 4.091
28 H 0.086 0.914
29 H 0.086 0.914
30 H 0.136 0.864
31 H 0.174 0.826
32 H 0.170 0.830
33 H 0.154 0.846
34 H 0.154 0.846
35 H 0.097 0.903
36 H 0.082 0.918
37 H 0.084 0.916
38 H 0.087 0.913
39 H 0.085 0.915
40 H 0.015 0.985
41 H 0.016 0.984
42 H 0.073 0.927
43 H 0.102 0.898
44 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -25.256 -21.502 -0.458 33.172
hybrid contribution 0.744 1.020 0.012 1.263
sum -24.511 -20.482 -0.446 31.946
Atomic orbital electron populations
1.23396 0.75962 1.05715 1.02583 1.86045 1.23811 1.26563 1.88310
1.18680 0.91293 0.85099 0.94367 1.21398 1.01431 0.91321 1.10925
1.20956 0.92434 0.98544 0.94023 1.19741 0.95025 0.93332 1.11928
1.18448 0.82481 0.92928 0.95478 1.19706 0.92306 0.96795 1.13216
1.86058 1.16497 1.36341 1.83682 1.23064 0.98162 0.80099 0.98790
1.21748 0.95796 0.90056 1.05445 0.84498 1.23669 0.80759 0.90129
0.74011 1.90670 1.68142 1.41696 1.41331 1.86477 1.24231 1.39666
1.76512 1.23177 0.93569 0.81980 1.00858 1.21464 0.90593 0.99340
1.01842 1.18944 0.94801 0.92028 0.95482 1.21640 0.95536 0.99424
1.41600 0.91664 1.25989 1.03879 0.94978 0.94975 1.70100 1.37864
1.03932 1.45375 0.85404 0.78713 0.78498 0.78175 1.19788 1.20851
1.18589 1.20289 0.91187 0.93879 1.03770 0.91401 0.91357 0.86357
0.82591 0.82958 0.84594 0.84563 0.90349 0.91783 0.91594 0.91285
0.91463 0.98483 0.98385 0.92720 0.89791 0.88376
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.12 9.81 113.37 1.11 1.23 16
2 O -0.33 -5.38 10.50 -92.40 -0.97 -6.35 16
3 C 0.15 2.69 6.68 22.45 0.15 2.84 16
4 C -0.23 -3.24 9.04 22.35 0.20 -3.04 16
5 C -0.04 -0.61 9.66 22.29 0.22 -0.40 16
6 C -0.20 -3.66 5.75 -19.71 -0.11 -3.77 16
7 C 0.15 3.17 6.47 22.51 0.15 3.32 16
8 C -0.20 -4.11 9.87 22.52 0.22 -3.89 16
9 O -0.31 -6.65 10.27 -92.16 -0.95 -7.60 16
10 C 0.07 1.38 6.28 72.12 0.45 1.83 16
11 C -0.11 -2.20 2.86 -11.38 -0.03 -2.23 16
12 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16
13 C 0.47 12.71 7.26 71.24 0.52 13.22 16
14 O -0.53 -17.24 15.55 21.97 0.34 -16.90 16
15 O -0.35 -10.57 10.08 -51.37 -0.52 -11.09 16
16 C 0.08 2.73 5.47 71.98 0.39 3.12 16
17 C -0.09 -3.80 5.53 30.59 0.17 -3.63 16
18 C 0.02 1.28 4.97 29.85 0.15 1.42 16
19 C -0.54 -30.47 9.11 25.60 0.23 -30.24 16
20 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16
21 C 0.00 -0.02 5.46 84.65 0.46 0.45 16
22 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16
23 Si 0.97 43.72 29.54 68.60 2.03 45.74 16
24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16
25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
26 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16
27 C -0.05 -1.00 4.65 29.90 0.14 -0.86 16
28 H 0.07 0.33 7.66 -2.39 -0.02 0.31 16
29 H 0.07 0.33 7.66 -2.39 -0.02 0.31 16
30 H 0.12 0.37 8.14 -2.38 -0.02 0.36 16
31 H 0.16 1.27 6.31 -2.91 -0.02 1.25 16
32 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16
33 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16
34 H 0.14 2.27 8.05 -2.39 -0.02 2.26 16
35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16
36 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16
37 H 0.07 2.35 8.13 -2.39 -0.02 2.33 16
38 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16
39 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16
40 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16
41 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16
42 H 0.26 14.98 8.31 -92.71 -0.77 14.20 16
43 H 0.08 1.66 7.71 -2.39 -0.02 1.64 16
44 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16
Total: -1.00 -69.28 370.38 5.63 -63.65
By element:
Atomic # 1 Polarization: 8.19 SS G_CDS: 0.99 Total: 9.18 kcal
Atomic # 6 Polarization: -25.03 SS G_CDS: 4.42 Total: -20.62 kcal
Atomic # 7 Polarization: -56.31 SS G_CDS: 0.28 Total: -56.02 kcal
Atomic # 8 Polarization: -39.85 SS G_CDS: -2.09 Total: -41.94 kcal
Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal
Total: -69.28 5.63 -63.65 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000064690607.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -108.985 kcal
(2) G-P(sol) polarization free energy of solvation -69.281 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.267 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.630 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.651 kcal
(6) G-S(sol) free energy of system = (1) + (5) -172.636 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds