Wall clock time and date at job start Tue Mar 31 2020 12:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76197 * 103.00201 * 2 1 4 4 C 1.39044 * 120.04682 * 0.02562 * 3 2 1 5 5 C 1.38106 * 120.06225 * 179.97438 * 4 3 2 6 6 C 1.38206 * 120.14910 * 359.72150 * 5 4 3 7 7 C 1.38915 * 120.08662 * 0.55904 * 6 5 4 8 8 N 1.39941 * 120.02762 * 179.72002 * 7 6 5 9 9 C 1.34780 * 119.99849 * 214.82894 * 8 7 6 10 10 O 1.21589 * 119.99905 * 355.31847 * 9 8 7 11 11 N 1.34779 * 119.99954 * 175.32843 * 9 8 7 12 12 C 1.46502 * 119.99821 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.47229 * 89.99734 * 12 11 9 14 14 H 1.07998 * 119.99669 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99997 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00263 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99949 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47316 * 359.97438 * 17 15 13 19 19 H 1.48511 * 109.47409 * 119.99438 * 17 15 13 20 20 H 1.48499 * 109.47172 * 239.99603 * 17 15 13 21 21 C 1.46494 * 119.99964 * 359.97438 * 11 9 8 22 22 C 1.53008 * 109.46783 * 90.00682 * 21 11 9 23 23 C 1.52998 * 117.49748 * 243.61956 * 22 21 11 24 24 C 1.53001 * 117.49603 * 174.99712 * 22 21 11 25 25 C 1.38726 * 119.94225 * 359.44088 * 7 6 5 26 26 H 1.09004 * 109.47076 * 59.99888 * 1 2 3 27 27 H 1.08998 * 109.47095 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46814 * 300.00215 * 1 2 3 29 29 H 1.08005 * 119.96976 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.92544 * 180.02562 * 5 4 3 31 31 H 1.07997 * 119.95458 * 180.29582 * 6 5 4 32 32 H 0.96999 * 120.00474 * 35.09895 * 8 7 6 33 33 H 1.08995 * 109.46869 * 209.99243 * 12 11 9 34 34 H 1.09002 * 109.47353 * 329.99802 * 12 11 9 35 35 H 0.96993 * 120.00400 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47095 * 210.00194 * 21 11 9 37 37 H 1.08995 * 109.47472 * 330.00489 * 21 11 9 38 38 H 1.09003 * 115.54994 * 29.32957 * 22 21 11 39 39 H 1.08996 * 117.49890 * 0.02562 * 23 22 21 40 40 H 1.09005 * 117.49684 * 145.01897 * 23 22 21 41 41 H 1.09002 * 117.49331 * 214.97524 * 24 22 21 42 42 H 1.08995 * 117.50490 * 0.02562 * 24 22 21 43 43 H 1.08000 * 120.07681 * 180.25263 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1943 2.6659 0.0005 5 6 1.5046 4.0117 0.0011 6 6 2.8252 4.4195 0.0069 7 6 3.8452 3.4766 0.0005 8 7 5.1819 3.8909 0.0005 9 6 6.1082 3.1787 -0.6713 10 8 5.7996 2.1312 -1.2059 11 7 7.3766 3.6275 -0.7502 12 6 8.3836 2.8530 -1.4799 13 6 8.4059 3.2904 -2.9219 14 1 7.7367 4.0672 -3.2609 15 6 9.2800 2.6980 -3.8084 16 7 10.0946 1.7516 -3.3957 17 14 9.3072 3.2397 -5.5960 18 1 8.3009 4.3118 -5.8038 19 1 10.6577 3.7551 -5.9366 20 1 8.9844 2.0825 -6.4688 21 6 7.7483 4.8897 -0.1063 22 6 8.2057 4.6153 1.3278 23 6 7.3724 5.2152 2.4621 24 6 8.7492 5.7965 2.1342 25 6 3.5378 2.1238 0.0000 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.1613 2.3505 0.0014 30 1 0.7137 4.7470 0.0019 31 1 3.0643 5.4727 0.0121 32 1 5.4425 4.6885 0.4871 33 1 9.3640 3.0206 -1.0342 34 1 8.1361 1.7928 -1.4256 35 1 10.7098 1.3351 -4.0193 36 1 8.5605 5.3565 -0.6636 37 1 6.8871 5.5575 -0.0915 38 1 8.6590 3.6387 1.4980 39 1 6.4981 5.8050 2.1867 40 1 7.2771 4.6331 3.3788 41 1 9.5596 5.5969 2.8352 42 1 8.7805 6.7692 1.6433 43 1 4.3291 1.3889 -0.0009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078439590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:25 Heat of formation + Delta-G solvation = 13.422952 kcal Electronic energy + Delta-G solvation = -24440.393318 eV Core-core repulsion = 20998.238048 eV Total energy + Delta-G solvation = -3442.155270 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.76680 -39.77342 -38.42581 -36.34876 -35.75198 -34.55794 -31.95752 -31.19448 -29.85132 -29.17751 -27.60863 -25.24439 -24.04225 -23.22563 -23.19552 -21.98231 -20.74656 -19.68432 -18.73073 -18.60214 -17.46241 -17.19316 -16.75548 -16.43388 -16.21397 -15.83071 -15.75625 -15.12203 -15.02234 -14.84608 -14.67019 -14.47148 -14.31519 -13.83301 -13.70209 -13.46140 -13.25553 -12.95580 -12.81143 -12.62765 -12.57790 -12.46154 -12.31589 -12.22456 -11.79306 -11.58284 -11.32208 -11.22527 -11.02373 -10.73541 -10.65086 -10.53172 -9.63044 -9.11150 -8.41054 -8.22387 -6.37210 0.20324 0.39592 0.57512 1.35122 1.38253 1.49281 1.54953 1.68002 2.12954 2.38239 2.78369 2.78530 3.06152 3.11101 3.81346 3.96163 3.97377 4.07839 4.13813 4.21707 4.25524 4.29630 4.30929 4.47513 4.57633 4.63369 4.75359 4.80483 4.81598 4.84955 4.93796 5.04359 5.17851 5.25624 5.27169 5.30561 5.35155 5.39513 5.50330 5.55388 5.77735 6.01879 6.05012 6.07030 6.71507 7.01443 7.29854 7.60600 8.84665 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010084 B = 0.004036 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.104749 B = 6936.396816 C = 8707.326408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.181 6.181 3 C -0.075 4.075 4 C -0.154 4.154 5 C -0.071 4.071 6 C -0.150 4.150 7 C 0.169 3.831 8 N -0.673 5.673 9 C 0.694 3.306 10 O -0.619 6.619 11 N -0.607 5.607 12 C 0.281 3.719 13 C -0.541 4.541 14 H 0.052 0.948 15 C 0.009 3.991 16 N -0.928 5.928 17 Si 0.967 3.033 18 H -0.268 1.268 19 H -0.267 1.267 20 H -0.283 1.283 21 C 0.142 3.858 22 C -0.198 4.198 23 C -0.168 4.168 24 C -0.155 4.155 25 C -0.135 4.135 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.101 0.899 29 H 0.153 0.847 30 H 0.172 0.828 31 H 0.157 0.843 32 H 0.418 0.582 33 H 0.027 0.973 34 H -0.004 1.004 35 H 0.267 0.733 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.143 9.859 12.937 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.060 5.940 3 C -0.188 4.188 4 C -0.178 4.178 5 C -0.091 4.091 6 C -0.173 4.173 7 C 0.072 3.928 8 N -0.324 5.324 9 C 0.396 3.604 10 O -0.499 6.499 11 N -0.341 5.341 12 C 0.159 3.841 13 C -0.580 4.580 14 H 0.070 0.930 15 C -0.190 4.190 16 N -0.567 5.567 17 Si 0.792 3.208 18 H -0.192 1.192 19 H -0.192 1.192 20 H -0.209 1.209 21 C 0.019 3.981 22 C -0.218 4.218 23 C -0.205 4.205 24 C -0.192 4.192 25 C -0.162 4.162 26 H 0.113 0.887 27 H 0.142 0.858 28 H 0.120 0.880 29 H 0.171 0.829 30 H 0.189 0.811 31 H 0.175 0.825 32 H 0.258 0.742 33 H 0.045 0.955 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.131 0.869 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.131 0.869 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.453 7.946 12.469 22.874 hybrid contribution 0.304 0.744 -0.853 1.172 sum -17.148 8.690 11.617 22.462 Atomic orbital electron populations 1.23759 0.90351 1.08527 1.06873 1.85963 1.11104 1.04204 1.92680 1.21641 0.95840 0.97020 1.04282 1.21464 0.98554 0.93183 1.04607 1.21269 0.96046 0.95551 0.96251 1.21248 0.91783 0.99547 1.04751 1.17706 0.83272 0.92671 0.99170 1.42577 1.05284 1.30752 1.53786 1.16133 0.81527 0.83315 0.79416 1.90876 1.79932 1.25621 1.53470 1.47363 1.07412 1.24620 1.54657 1.18642 0.85169 0.90021 0.90255 1.21726 1.20048 1.20934 0.95302 0.92971 1.25830 0.94833 0.94746 1.03580 1.70055 1.23360 1.26314 1.37021 0.85374 0.78425 0.78138 0.78885 1.19207 1.19152 1.20912 1.21215 1.01301 0.84457 0.91121 1.22712 1.07414 0.98956 0.92680 1.23168 0.95540 1.03232 0.98580 1.23021 0.97209 0.97064 1.01911 1.20782 0.95332 0.95773 1.04265 0.88666 0.85793 0.88013 0.82936 0.81062 0.82502 0.74177 0.95525 0.98607 0.92400 0.89919 0.88972 0.90241 0.86912 0.88569 0.88135 0.86905 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.15 113.37 1.04 -0.82 16 2 S -0.18 -5.06 22.56 -56.49 -1.27 -6.33 16 3 C -0.07 -2.26 6.11 22.61 0.14 -2.12 16 4 C -0.15 -3.32 9.36 22.43 0.21 -3.11 16 5 C -0.07 -1.31 10.03 22.23 0.22 -1.08 16 6 C -0.15 -3.38 9.96 22.42 0.22 -3.15 16 7 C 0.17 5.46 6.30 38.13 0.24 5.70 16 8 N -0.67 -22.53 5.17 -317.24 -1.64 -24.18 16 9 C 0.69 31.60 8.12 179.05 1.45 33.06 16 10 O -0.62 -34.87 13.35 -3.99 -0.05 -34.92 16 11 N -0.61 -26.99 2.46 -844.18 -2.07 -29.06 16 12 C 0.28 15.65 5.16 85.63 0.44 16.09 16 13 C -0.54 -32.03 9.39 25.60 0.24 -31.79 16 14 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 15 C 0.01 0.54 5.46 84.65 0.46 1.00 16 16 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 17 Si 0.97 45.97 29.54 68.60 2.03 48.00 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 21 C 0.14 4.51 5.41 86.38 0.47 4.98 16 22 C -0.20 -5.38 6.01 -10.79 -0.06 -5.45 16 23 C -0.17 -3.21 9.85 30.59 0.30 -2.91 16 24 C -0.15 -2.98 10.25 30.60 0.31 -2.67 16 25 C -0.14 -5.07 8.44 22.53 0.19 -4.88 16 26 H 0.09 1.20 7.75 -2.39 -0.02 1.18 16 27 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.10 1.12 7.74 -2.39 -0.02 1.10 16 29 H 0.15 2.23 5.87 -2.91 -0.02 2.21 16 30 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.42 10.55 5.92 -92.71 -0.55 10.00 16 33 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 34 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 35 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 37 H 0.09 2.28 6.17 -2.39 -0.01 2.26 16 38 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.11 1.64 7.67 -2.39 -0.02 1.62 16 40 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.10 4.75 6.22 -2.91 -0.02 4.73 16 Total: -1.00 -81.62 370.54 3.62 -78.00 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.47 Total: 22.59 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 5.88 Total: 2.84 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -3.43 Total: -110.18 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.05 Total: -34.92 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: -5.06 SS G_CDS: -1.27 Total: -6.33 kcal Total: -81.62 3.62 -78.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078439590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.426 kcal (2) G-P(sol) polarization free energy of solvation -81.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds