Wall clock time and date at job start Tue Mar 31 2020 12:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48570 * 110.99888 * 2 1 4 4 C 1.54375 * 104.59422 * 200.96444 * 3 2 1 5 5 C 1.54262 * 105.06415 * 23.85245 * 4 3 2 6 6 H 1.09002 * 110.32342 * 241.00646 * 5 4 3 7 7 C 1.52992 * 110.32282 * 118.89647 * 5 4 3 8 8 N 1.46505 * 109.46867 * 176.42674 * 7 5 4 9 9 C 1.34779 * 119.99740 * 179.97438 * 8 7 5 10 10 O 1.21553 * 120.00298 * 0.02562 * 9 8 7 11 11 C 1.47869 * 119.99686 * 180.02562 * 9 8 7 12 12 C 1.39671 * 120.09983 * 0.02562 * 11 9 8 13 13 C 1.38039 * 120.03552 * 179.97438 * 12 11 9 14 14 C 1.38181 * 120.24496 * 359.68289 * 13 12 11 15 15 C 1.39179 * 120.19976 * 0.59721 * 14 13 12 16 16 S 1.76202 * 120.01981 * 179.69453 * 15 14 13 17 17 C 1.76205 * 100.00213 * 274.26847 * 16 15 14 18 18 H 1.08001 * 119.99620 * 354.88544 * 17 16 15 19 19 C 1.38728 * 119.99654 * 174.88896 * 17 16 15 20 20 N 1.31614 * 120.00315 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99644 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46941 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47269 * 119.99486 * 21 19 17 24 24 H 1.48500 * 109.47087 * 240.00036 * 21 19 17 25 25 C 1.38878 * 119.96167 * 359.42778 * 15 14 13 26 26 C 1.48725 * 111.01537 * 244.49747 * 2 1 3 27 27 H 1.09002 * 109.47392 * 59.87030 * 1 2 3 28 28 H 1.08996 * 109.46878 * 179.87513 * 1 2 3 29 29 H 1.08998 * 109.47004 * 299.86891 * 1 2 3 30 30 H 1.08993 * 110.40980 * 82.18579 * 3 2 1 31 31 H 1.08997 * 110.50714 * 319.79133 * 3 2 1 32 32 H 1.08998 * 110.32292 * 264.95344 * 4 3 2 33 33 H 1.09000 * 110.32662 * 142.75088 * 4 3 2 34 34 H 1.08996 * 109.47569 * 56.43108 * 7 5 4 35 35 H 1.08994 * 109.47534 * 296.42520 * 7 5 4 36 36 H 0.97002 * 120.00184 * 0.02562 * 8 7 5 37 37 H 1.07999 * 119.98394 * 359.97438 * 12 11 9 38 38 H 1.08003 * 119.88232 * 179.97438 * 13 12 11 39 39 H 1.08003 * 119.90041 * 180.29250 * 14 13 12 40 40 H 0.97006 * 120.00017 * 180.02562 * 20 19 17 41 41 H 1.07999 * 120.12379 * 180.25316 * 25 15 14 42 42 H 1.08994 * 110.39124 * 40.23523 * 26 2 1 43 43 H 1.08999 * 110.50507 * 277.74636 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4431 1.2503 -0.5345 5 6 3.4432 -0.0538 -1.3587 6 1 4.1496 -0.7685 -0.9363 7 6 3.7946 0.2402 -2.8184 8 7 3.8730 -1.0181 -3.5647 9 6 4.1708 -1.0045 -4.8791 10 8 4.3748 0.0516 -5.4452 11 6 4.2494 -2.2744 -5.6324 12 6 4.0148 -3.4891 -4.9841 13 6 4.0880 -4.6738 -5.6888 14 6 4.3866 -4.6639 -7.0379 15 6 4.6278 -3.4597 -7.6927 16 16 5.0161 -3.4531 -9.4114 17 6 6.7573 -3.7115 -9.3328 18 1 7.2569 -3.7358 -8.3756 19 6 7.4864 -3.8836 -10.5005 20 7 6.8774 -3.8543 -11.6669 21 14 9.3322 -4.1582 -10.4171 22 1 9.7705 -4.1487 -8.9982 23 1 9.6658 -5.4690 -11.0298 24 1 10.0278 -3.0746 -11.1568 25 6 4.5569 -2.2628 -6.9919 26 6 2.0023 -0.5977 -1.2531 27 1 -0.3634 0.5158 -0.8888 28 1 -0.3633 -1.0276 -0.0022 29 1 -0.3633 0.5118 0.8911 30 1 2.0079 1.7917 1.0120 31 1 1.4103 2.0229 -0.6591 32 1 4.1482 1.1750 0.2933 33 1 3.6935 2.0997 -1.1700 34 1 4.7565 0.7507 -2.8649 35 1 3.0247 0.8752 -3.2567 36 1 3.7098 -1.8609 -3.1130 37 1 3.7761 -3.5015 -3.9309 38 1 3.9065 -5.6117 -5.1849 39 1 4.4377 -5.5938 -7.5849 40 1 7.3872 -3.9750 -12.4833 41 1 4.7396 -1.3265 -7.4983 42 1 1.4105 -0.2752 -2.1096 43 1 2.0108 -1.6855 -1.1837 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079541446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:04 Heat of formation + Delta-G solvation = -13.376750 kcal Electronic energy + Delta-G solvation = -23350.302755 eV Core-core repulsion = 19906.985362 eV Total energy + Delta-G solvation = -3443.317392 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.20105 -39.29018 -37.79325 -35.22684 -32.72946 -32.51484 -30.94931 -30.53612 -29.38581 -27.04862 -25.57936 -24.90491 -23.17715 -22.17549 -21.64352 -20.80480 -20.16215 -18.29338 -17.42203 -16.78541 -16.03609 -15.93597 -15.47744 -15.34819 -14.93094 -14.85591 -14.66906 -14.29779 -14.17630 -13.63646 -13.46560 -13.38122 -13.01808 -12.80770 -12.49066 -12.26271 -11.95886 -11.86974 -11.69684 -11.65763 -11.32581 -11.15802 -11.13805 -11.09697 -10.95804 -10.71417 -9.97801 -9.78770 -9.21801 -9.17324 -9.02561 -8.96367 -8.59387 -8.03006 -6.72024 -6.29359 -4.03178 1.15449 1.65376 3.02107 3.06601 3.18941 3.22254 3.28424 3.47018 3.56366 4.07736 4.13428 4.24777 4.26189 4.41618 4.75492 4.82930 4.89732 4.98703 5.00966 5.04944 5.05963 5.09444 5.22626 5.24089 5.30224 5.43207 5.45736 5.47151 5.47530 5.56902 5.66844 5.74394 5.82123 5.86038 5.98390 6.23921 6.30841 6.34859 6.52602 6.56715 6.63312 6.92499 7.17951 7.45512 7.57196 8.26067 8.32414 9.16585 10.77452 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.025426 B = 0.002331 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.978676 B =12010.759495 C =12425.734965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.517 5.517 3 C 0.030 3.970 4 C -0.117 4.117 5 C -0.105 4.105 6 H 0.089 0.911 7 C 0.128 3.872 8 N -0.732 5.732 9 C 0.564 3.436 10 O -0.535 6.535 11 C -0.155 4.155 12 C -0.090 4.090 13 C -0.141 4.141 14 C -0.054 4.054 15 C -0.106 4.106 16 S -0.036 6.036 17 C -0.518 4.518 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.870 5.870 21 Si 0.921 3.079 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.019 4.019 26 C 0.033 3.967 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.399 0.601 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.269 0.731 41 H 0.139 0.861 42 H 0.050 0.950 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.307 5.030 23.596 26.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.241 5.241 3 C -0.098 4.098 4 C -0.155 4.155 5 C -0.125 4.125 6 H 0.107 0.893 7 C 0.004 3.996 8 N -0.386 5.386 9 C 0.352 3.648 10 O -0.412 6.412 11 C -0.160 4.160 12 C -0.109 4.109 13 C -0.161 4.161 14 C -0.075 4.075 15 C -0.217 4.217 16 S 0.199 5.801 17 C -0.666 4.666 18 H 0.094 0.906 19 C -0.137 4.137 20 N -0.506 5.506 21 Si 0.747 3.253 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.041 4.041 26 C -0.095 4.095 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.235 0.765 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.079 0.921 41 H 0.157 0.843 42 H 0.069 0.931 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.661 5.638 22.493 25.522 hybrid contribution 1.454 -0.379 0.673 1.646 sum -9.208 5.259 23.166 25.477 Atomic orbital electron populations 1.22515 0.87843 1.02387 1.00918 1.65402 1.08348 1.15355 1.34960 1.23150 0.95190 0.90164 1.01301 1.22291 0.96795 0.96886 0.99551 1.22162 0.97258 0.98539 0.94515 0.89281 1.21455 1.02162 0.86406 0.89552 1.45896 1.73265 1.09731 1.09688 1.18416 0.75854 0.89186 0.81327 1.90773 1.49170 1.32428 1.68873 1.19847 1.08643 0.92298 0.95208 1.21127 0.98964 0.92076 0.98709 1.21071 1.02655 0.97575 0.94763 1.22010 0.93399 0.98326 0.93788 1.22845 1.01350 0.93873 1.03627 1.83626 1.10244 1.94154 0.92112 1.22875 0.90812 1.57072 0.95839 0.90567 1.25006 0.99680 0.94467 0.94506 1.69996 1.36291 1.46742 0.97538 0.86061 0.82679 0.78034 0.78485 1.19506 1.20481 1.20443 1.21911 0.91730 0.98939 0.91533 1.23288 0.94492 1.00408 0.91274 0.95203 0.91114 0.91231 0.89962 0.93622 0.90390 0.90571 0.91035 0.91473 0.76548 0.86555 0.85854 0.85066 0.92112 0.84316 0.93123 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.53 60.06 0.57 0.65 16 2 N -0.52 -3.92 5.66 -238.09 -1.35 -5.27 16 3 C 0.03 0.20 6.49 -2.18 -0.01 0.18 16 4 C -0.12 -0.74 6.65 -25.35 -0.17 -0.91 16 5 C -0.11 -0.75 3.10 -89.24 -0.28 -1.02 16 6 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 7 C 0.13 1.22 4.78 -4.04 -0.02 1.20 16 8 N -0.73 -8.07 5.36 -61.25 -0.33 -8.39 16 9 C 0.56 8.90 7.77 -12.32 -0.10 8.80 16 10 O -0.54 -10.46 16.34 5.32 0.09 -10.37 16 11 C -0.16 -2.57 5.87 -104.99 -0.62 -3.19 16 12 C -0.09 -1.21 9.54 -39.12 -0.37 -1.58 16 13 C -0.14 -2.02 10.02 -39.68 -0.40 -2.41 16 14 C -0.05 -0.98 9.79 -39.25 -0.38 -1.36 16 15 C -0.11 -2.27 5.45 -39.00 -0.21 -2.48 16 16 S -0.04 -0.93 21.41 -107.50 -2.30 -3.23 16 17 C -0.52 -14.63 9.46 30.91 0.29 -14.34 16 18 H 0.08 2.14 7.79 -52.49 -0.41 1.73 16 19 C 0.07 2.03 5.49 -17.46 -0.10 1.93 16 20 N -0.87 -25.43 13.22 55.49 0.73 -24.69 16 21 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C -0.02 -0.39 9.34 -38.92 -0.36 -0.76 16 26 C 0.03 0.24 5.79 -2.09 -0.01 0.23 16 27 H 0.03 0.19 7.98 -51.93 -0.41 -0.22 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.30 7.97 -51.93 -0.41 -0.11 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.46 7.71 -51.93 -0.40 0.06 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.70 8.02 -51.93 -0.42 0.29 16 36 H 0.40 3.36 6.39 -40.82 -0.26 3.10 16 37 H 0.12 1.08 6.40 -52.49 -0.34 0.75 16 38 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 39 H 0.13 2.30 8.06 -52.48 -0.42 1.88 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.14 2.99 7.65 -52.49 -0.40 2.58 16 42 H 0.05 0.41 7.54 -51.93 -0.39 0.02 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -32.94 370.82 -11.14 -44.09 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.38 Total: 0.93 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -2.17 Total: -15.05 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.94 Total: -38.35 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.30 Total: -3.23 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.94 -11.14 -44.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079541446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.709 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds