Wall clock time and date at job start Tue Mar 31 2020 12:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48570 * 110.99888 * 2 1 4 4 C 1.54375 * 104.59422 * 200.96444 * 3 2 1 5 5 C 1.54262 * 105.06415 * 23.85245 * 4 3 2 6 6 H 1.09002 * 110.32342 * 241.00646 * 5 4 3 7 7 C 1.52992 * 110.32282 * 118.89647 * 5 4 3 8 8 N 1.46505 * 109.46867 * 176.42674 * 7 5 4 9 9 C 1.34779 * 119.99740 * 179.97438 * 8 7 5 10 10 O 1.21553 * 120.00298 * 0.02562 * 9 8 7 11 11 C 1.47869 * 119.99686 * 180.02562 * 9 8 7 12 12 C 1.39671 * 120.09983 * 0.02562 * 11 9 8 13 13 C 1.38039 * 120.03552 * 179.97438 * 12 11 9 14 14 C 1.38181 * 120.24496 * 359.68289 * 13 12 11 15 15 C 1.39179 * 120.19976 * 0.59721 * 14 13 12 16 16 S 1.76202 * 120.01981 * 179.69453 * 15 14 13 17 17 C 1.76205 * 100.00213 * 274.26847 * 16 15 14 18 18 H 1.08001 * 119.99620 * 354.88544 * 17 16 15 19 19 C 1.38728 * 119.99654 * 174.88896 * 17 16 15 20 20 N 1.31614 * 120.00315 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99644 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46941 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47269 * 119.99486 * 21 19 17 24 24 H 1.48500 * 109.47087 * 240.00036 * 21 19 17 25 25 C 1.38878 * 119.96167 * 359.42778 * 15 14 13 26 26 C 1.48725 * 111.01537 * 244.49747 * 2 1 3 27 27 H 1.09002 * 109.47392 * 59.87030 * 1 2 3 28 28 H 1.08996 * 109.46878 * 179.87513 * 1 2 3 29 29 H 1.08998 * 109.47004 * 299.86891 * 1 2 3 30 30 H 1.08993 * 110.40980 * 82.18579 * 3 2 1 31 31 H 1.08997 * 110.50714 * 319.79133 * 3 2 1 32 32 H 1.08998 * 110.32292 * 264.95344 * 4 3 2 33 33 H 1.09000 * 110.32662 * 142.75088 * 4 3 2 34 34 H 1.08996 * 109.47569 * 56.43108 * 7 5 4 35 35 H 1.08994 * 109.47534 * 296.42520 * 7 5 4 36 36 H 0.97002 * 120.00184 * 0.02562 * 8 7 5 37 37 H 1.07999 * 119.98394 * 359.97438 * 12 11 9 38 38 H 1.08003 * 119.88232 * 179.97438 * 13 12 11 39 39 H 1.08003 * 119.90041 * 180.29250 * 14 13 12 40 40 H 0.97006 * 120.00017 * 180.02562 * 20 19 17 41 41 H 1.07999 * 120.12379 * 180.25316 * 25 15 14 42 42 H 1.08994 * 110.39124 * 40.23523 * 26 2 1 43 43 H 1.08999 * 110.50507 * 277.74636 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4431 1.2503 -0.5345 5 6 3.4432 -0.0538 -1.3587 6 1 4.1496 -0.7685 -0.9363 7 6 3.7946 0.2402 -2.8184 8 7 3.8730 -1.0181 -3.5647 9 6 4.1708 -1.0045 -4.8791 10 8 4.3748 0.0516 -5.4452 11 6 4.2494 -2.2744 -5.6324 12 6 4.0148 -3.4891 -4.9841 13 6 4.0880 -4.6738 -5.6888 14 6 4.3866 -4.6639 -7.0379 15 6 4.6278 -3.4597 -7.6927 16 16 5.0161 -3.4531 -9.4114 17 6 6.7573 -3.7115 -9.3328 18 1 7.2569 -3.7358 -8.3756 19 6 7.4864 -3.8836 -10.5005 20 7 6.8774 -3.8543 -11.6669 21 14 9.3322 -4.1582 -10.4171 22 1 9.7705 -4.1487 -8.9982 23 1 9.6658 -5.4690 -11.0298 24 1 10.0278 -3.0746 -11.1568 25 6 4.5569 -2.2628 -6.9919 26 6 2.0023 -0.5977 -1.2531 27 1 -0.3634 0.5158 -0.8888 28 1 -0.3633 -1.0276 -0.0022 29 1 -0.3633 0.5118 0.8911 30 1 2.0079 1.7917 1.0120 31 1 1.4103 2.0229 -0.6591 32 1 4.1482 1.1750 0.2933 33 1 3.6935 2.0997 -1.1700 34 1 4.7565 0.7507 -2.8649 35 1 3.0247 0.8752 -3.2567 36 1 3.7098 -1.8609 -3.1130 37 1 3.7761 -3.5015 -3.9309 38 1 3.9065 -5.6117 -5.1849 39 1 4.4377 -5.5938 -7.5849 40 1 7.3872 -3.9750 -12.4833 41 1 4.7396 -1.3265 -7.4983 42 1 1.4105 -0.2752 -2.1096 43 1 2.0108 -1.6855 -1.1837 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079541446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:04 Heat of formation + Delta-G solvation = -36.077238 kcal Electronic energy + Delta-G solvation = -23351.287122 eV Core-core repulsion = 19906.985362 eV Total energy + Delta-G solvation = -3444.301760 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32112 -40.03924 -39.07595 -36.20336 -34.65900 -33.54221 -32.13986 -31.87068 -30.04974 -27.79171 -27.68340 -25.70815 -24.33140 -23.49804 -22.23630 -21.70456 -21.11037 -19.94980 -18.97556 -17.62178 -17.14622 -16.94050 -16.83388 -16.64817 -16.36465 -15.98278 -15.62428 -15.40583 -15.15635 -14.83635 -14.65076 -14.58666 -14.05490 -13.83368 -13.54308 -13.25325 -13.11506 -13.03631 -12.98396 -12.65762 -12.47141 -12.39986 -12.38844 -12.24442 -11.92326 -11.73910 -11.50571 -11.25352 -11.13278 -10.75821 -10.29626 -9.90325 -9.69455 -9.50474 -8.82003 -8.39705 -6.19966 -0.18752 0.25051 1.29806 1.36283 1.46692 1.64558 1.79066 2.05671 2.24047 2.80037 2.93199 3.03828 3.41466 3.56347 3.62267 3.77311 3.81530 3.94321 4.03774 4.24095 4.32665 4.35433 4.39981 4.47634 4.50456 4.52071 4.63187 4.71222 4.73171 4.78814 4.91532 4.92159 5.00061 5.03830 5.12838 5.21249 5.24354 5.31907 5.36914 5.38413 5.50455 5.82541 5.85822 6.01190 6.15670 6.44665 7.00605 7.11984 8.67697 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.025426 B = 0.002331 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.978676 B =12010.759495 C =12425.734965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.527 5.527 3 C 0.028 3.972 4 C -0.116 4.116 5 C -0.094 4.094 6 H 0.102 0.898 7 C 0.129 3.871 8 N -0.706 5.706 9 C 0.562 3.438 10 O -0.583 6.583 11 C -0.157 4.157 12 C -0.062 4.062 13 C -0.121 4.121 14 C -0.064 4.064 15 C -0.128 4.128 16 S -0.099 6.099 17 C -0.534 4.534 18 H 0.067 0.933 19 C 0.018 3.982 20 N -0.906 5.906 21 Si 0.994 3.006 22 H -0.266 1.266 23 H -0.265 1.265 24 H -0.272 1.272 25 C -0.045 4.045 26 C 0.033 3.967 27 H 0.025 0.975 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.416 0.584 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.130 0.870 40 H 0.274 0.726 41 H 0.105 0.895 42 H 0.040 0.960 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.204 3.511 27.621 29.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.251 5.251 3 C -0.100 4.100 4 C -0.155 4.155 5 C -0.114 4.114 6 H 0.121 0.879 7 C 0.006 3.994 8 N -0.359 5.359 9 C 0.350 3.650 10 O -0.464 6.464 11 C -0.162 4.162 12 C -0.080 4.080 13 C -0.140 4.140 14 C -0.085 4.085 15 C -0.240 4.240 16 S 0.135 5.865 17 C -0.681 4.681 18 H 0.085 0.915 19 C -0.187 4.187 20 N -0.543 5.543 21 Si 0.816 3.184 22 H -0.190 1.190 23 H -0.190 1.190 24 H -0.198 1.198 25 C -0.067 4.067 26 C -0.095 4.095 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.255 0.745 37 H 0.192 0.808 38 H 0.192 0.808 39 H 0.148 0.852 40 H 0.083 0.917 41 H 0.124 0.876 42 H 0.058 0.942 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.588 4.098 26.567 28.891 hybrid contribution 1.285 0.145 -0.392 1.351 sum -9.303 4.242 26.175 28.101 Atomic orbital electron populations 1.22545 0.87345 1.02757 1.01083 1.65430 1.08948 1.15762 1.34915 1.23192 0.95188 0.89878 1.01712 1.22310 0.96913 0.96524 0.99729 1.22092 0.97522 0.99282 0.92468 0.87939 1.21544 1.01540 0.85470 0.90881 1.45697 1.70944 1.11300 1.07941 1.18376 0.75818 0.88153 0.82625 1.90758 1.51601 1.33865 1.70181 1.19963 1.08180 0.94333 0.93711 1.21712 0.95182 0.90023 1.01082 1.21553 0.99764 1.00008 0.92704 1.22083 0.93853 0.96753 0.95819 1.22471 1.04966 0.95900 1.00619 1.83529 1.10065 1.94588 0.98287 1.23074 0.91988 1.57257 0.95770 0.91457 1.26025 1.04843 0.93889 0.93929 1.70116 1.38325 1.47548 0.98297 0.84969 0.76235 0.78495 0.78697 1.18993 1.19025 1.19764 1.21621 0.94252 0.97240 0.93553 1.23315 0.94196 1.01100 0.90925 0.95621 0.90649 0.90542 0.89204 0.94024 0.89410 0.90564 0.91724 0.92537 0.74508 0.80786 0.80767 0.85175 0.91697 0.87647 0.94197 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.53 127.69 1.22 1.34 16 2 N -0.53 -6.63 5.66 -907.19 -5.13 -11.76 16 3 C 0.03 0.31 6.49 86.45 0.56 0.87 16 4 C -0.12 -1.20 6.65 31.49 0.21 -0.99 16 5 C -0.09 -1.05 3.10 -9.90 -0.03 -1.08 16 6 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 7 C 0.13 2.22 4.78 86.38 0.41 2.63 16 8 N -0.71 -13.53 5.36 -465.96 -2.50 -16.03 16 9 C 0.56 17.20 7.77 86.79 0.67 17.87 16 10 O -0.58 -23.44 16.34 -3.88 -0.06 -23.50 16 11 C -0.16 -5.00 5.87 -20.10 -0.12 -5.12 16 12 C -0.06 -1.37 9.54 22.57 0.22 -1.15 16 13 C -0.12 -2.92 10.02 22.21 0.22 -2.69 16 14 C -0.06 -2.26 9.79 22.48 0.22 -2.04 16 15 C -0.13 -5.70 5.45 22.65 0.12 -5.57 16 16 S -0.10 -5.48 21.41 -56.49 -1.21 -6.69 16 17 C -0.53 -31.43 9.46 67.94 0.64 -30.78 16 18 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 19 C 0.02 1.05 5.49 84.84 0.47 1.51 16 20 N -0.91 -54.77 13.22 21.63 0.29 -54.48 16 21 Si 0.99 44.61 29.55 68.60 2.03 46.63 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 C -0.04 -1.88 9.34 22.70 0.21 -1.67 16 26 C 0.03 0.38 5.79 86.42 0.50 0.88 16 27 H 0.03 0.29 7.98 -2.39 -0.02 0.27 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 0.49 7.97 -2.39 -0.02 0.47 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.79 7.71 -2.39 -0.02 0.77 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.06 1.13 8.02 -2.39 -0.02 1.11 16 36 H 0.42 4.92 6.39 -92.71 -0.59 4.33 16 37 H 0.17 1.90 6.40 -2.91 -0.02 1.88 16 38 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 40 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 41 H 0.11 5.01 7.65 -2.91 -0.02 4.99 16 42 H 0.04 0.56 7.54 -2.39 -0.02 0.54 16 43 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -77.92 370.82 -0.64 -78.56 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.42 Total: 13.28 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: 5.53 Total: -26.00 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -7.34 Total: -82.28 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.06 Total: -23.50 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: -5.48 SS G_CDS: -1.21 Total: -6.69 kcal Total: -77.92 -0.64 -78.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079541446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.486 kcal (2) G-P(sol) polarization free energy of solvation -77.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds