Wall clock time and date at job start Tue Mar 31 2020 12:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47900 * 111.00277 * 2 1 4 4 C 1.53991 * 107.06094 * 145.84511 * 3 2 1 5 5 C 1.54598 * 105.13857 * 358.77296 * 4 3 2 6 6 H 1.08997 * 110.72069 * 96.58284 * 5 4 3 7 7 C 1.53003 * 110.72390 * 219.68434 * 5 4 3 8 8 N 1.46502 * 109.46848 * 182.55069 * 7 5 4 9 9 C 1.34771 * 119.99824 * 180.02562 * 8 7 5 10 10 O 1.21552 * 120.00272 * 359.72242 * 9 8 7 11 11 C 1.47865 * 120.00035 * 180.02562 * 9 8 7 12 12 C 1.39674 * 120.09876 * 359.97438 * 11 9 8 13 13 C 1.38039 * 120.03552 * 179.97438 * 12 11 9 14 14 C 1.38177 * 120.24584 * 359.97438 * 13 12 11 15 15 C 1.39179 * 120.20192 * 0.02562 * 14 13 12 16 16 S 1.76205 * 120.02008 * 179.97438 * 15 14 13 17 17 C 1.76204 * 99.99898 * 265.47952 * 16 15 14 18 18 H 1.07995 * 120.00319 * 5.11940 * 17 16 15 19 19 C 1.38729 * 119.99570 * 185.11624 * 17 16 15 20 20 N 1.31624 * 119.99590 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00504 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.46981 * 89.99863 * 21 19 17 23 23 H 1.48494 * 109.47209 * 210.00067 * 21 19 17 24 24 H 1.48502 * 109.46806 * 330.00116 * 21 19 17 25 25 C 1.38873 * 119.96061 * 359.74507 * 15 14 13 26 26 C 1.48736 * 111.04237 * 117.57601 * 2 1 3 27 27 H 1.09004 * 109.47046 * 60.12263 * 1 2 3 28 28 H 1.09001 * 109.47148 * 180.13040 * 1 2 3 29 29 H 1.09000 * 109.46815 * 300.12956 * 1 2 3 30 30 H 1.09003 * 109.91966 * 26.49019 * 3 2 1 31 31 H 1.08996 * 110.08353 * 265.29196 * 3 2 1 32 32 H 1.09001 * 110.30712 * 239.86420 * 4 3 2 33 33 H 1.09000 * 110.31128 * 117.69373 * 4 3 2 34 34 H 1.09005 * 109.46983 * 62.55238 * 7 5 4 35 35 H 1.08996 * 109.46914 * 302.54766 * 7 5 4 36 36 H 0.97003 * 119.99824 * 359.97438 * 8 7 5 37 37 H 1.08001 * 119.98039 * 359.97438 * 12 11 9 38 38 H 1.08005 * 119.87835 * 180.02562 * 13 12 11 39 39 H 1.08000 * 119.89956 * 180.02562 * 14 13 12 40 40 H 0.96997 * 120.00075 * 180.02562 * 20 19 17 41 41 H 1.07998 * 120.12199 * 180.25755 * 25 15 14 42 42 H 1.08998 * 110.83715 * 81.96217 * 26 2 1 43 43 H 1.08998 * 110.58540 * 318.76675 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3807 0.0000 4 6 3.2983 1.3659 0.8265 5 6 3.4492 -0.0930 1.3154 6 1 4.1141 -0.6532 0.6580 7 6 3.9589 -0.1307 2.7575 8 7 4.1496 -1.5230 3.1717 9 6 4.5955 -1.8018 4.4126 10 8 4.8443 -0.8980 5.1864 11 6 4.7885 -3.2070 4.8305 12 6 4.5087 -4.2470 3.9411 13 6 4.6898 -5.5583 4.3325 14 6 5.1483 -5.8484 5.6032 15 6 5.4302 -4.8200 6.4976 16 16 6.0141 -5.1954 8.1171 17 6 4.4908 -5.1805 9.0026 18 1 3.5588 -5.0545 8.4718 19 6 4.4887 -5.3308 10.3818 20 7 3.3508 -5.3201 11.0432 21 14 6.1007 -5.5482 11.3001 22 1 6.6289 -4.2176 11.6948 23 1 5.8712 -6.3700 12.5154 24 1 7.0837 -6.2297 10.4200 25 6 5.2556 -3.4975 6.1112 26 6 2.0031 -0.6426 1.2305 27 1 -0.3633 0.5119 -0.8911 28 1 -0.3633 -1.0277 0.0023 29 1 -0.3633 0.5159 0.8888 30 1 1.2759 2.0562 0.4571 31 1 2.2117 1.7000 -1.0202 32 1 3.2137 2.0428 1.6766 33 1 4.1471 1.6454 0.2023 34 1 3.2306 0.3469 3.4130 35 1 4.9085 0.4005 2.8212 36 1 3.9541 -2.2441 2.5531 37 1 4.1505 -4.0251 2.9467 38 1 4.4731 -6.3605 3.6425 39 1 5.2884 -6.8764 5.9034 40 1 3.3493 -5.4248 12.0075 41 1 5.4775 -2.6973 6.8017 42 1 2.0093 -1.7279 1.1296 43 1 1.4245 -0.3396 2.1031 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079541447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:07 Heat of formation + Delta-G solvation = -35.814812 kcal Electronic energy + Delta-G solvation = -23388.628164 eV Core-core repulsion = 19944.337784 eV Total energy + Delta-G solvation = -3444.290380 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32754 -40.03609 -39.11324 -36.23045 -34.72823 -33.54649 -32.16541 -31.92380 -30.10951 -27.93366 -27.73977 -25.71322 -24.37538 -23.56145 -22.13666 -21.74473 -21.22156 -20.01722 -18.99135 -17.63200 -17.20620 -17.14135 -16.85789 -16.61790 -16.35894 -15.98098 -15.67787 -15.36266 -15.02771 -14.85487 -14.75036 -14.68819 -14.21986 -13.93689 -13.63656 -13.57844 -13.16481 -13.09544 -13.04790 -12.69038 -12.46382 -12.39413 -12.32192 -12.26756 -11.90495 -11.85688 -11.52664 -11.24349 -11.19741 -10.92951 -10.30810 -9.92426 -9.74962 -9.44547 -9.15338 -8.54885 -6.28978 -0.21527 0.20437 1.05814 1.30687 1.43245 1.64649 1.76602 2.04635 2.20905 2.59205 2.83309 2.96243 3.00609 3.53949 3.60914 3.72194 3.84585 3.91675 4.02249 4.21942 4.30300 4.32234 4.38862 4.44982 4.48833 4.51237 4.60414 4.67706 4.73604 4.77780 4.89708 4.91202 4.98663 5.01684 5.10629 5.19035 5.25400 5.29928 5.35691 5.43754 5.67881 5.82704 5.86135 6.01704 6.09162 6.43714 6.87591 7.11137 8.58814 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.022427 B = 0.002395 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.207991 B =11686.466674 C =11833.171639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.533 5.533 3 C 0.033 3.967 4 C -0.123 4.123 5 C -0.092 4.092 6 H 0.106 0.894 7 C 0.130 3.870 8 N -0.705 5.705 9 C 0.561 3.439 10 O -0.583 6.583 11 C -0.159 4.159 12 C -0.058 4.058 13 C -0.121 4.121 14 C -0.059 4.059 15 C -0.120 4.120 16 S -0.116 6.116 17 C -0.523 4.523 18 H 0.045 0.955 19 C 0.040 3.960 20 N -0.920 5.920 21 Si 0.922 3.078 22 H -0.263 1.263 23 H -0.257 1.257 24 H -0.226 1.226 25 C -0.044 4.044 26 C 0.035 3.965 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.024 0.976 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.416 0.584 37 H 0.175 0.825 38 H 0.178 0.822 39 H 0.140 0.860 40 H 0.278 0.722 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.097 7.788 -27.446 28.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.257 5.257 3 C -0.095 4.095 4 C -0.161 4.161 5 C -0.111 4.111 6 H 0.124 0.876 7 C 0.007 3.993 8 N -0.358 5.358 9 C 0.349 3.651 10 O -0.464 6.464 11 C -0.164 4.164 12 C -0.077 4.077 13 C -0.140 4.140 14 C -0.079 4.079 15 C -0.231 4.231 16 S 0.118 5.882 17 C -0.670 4.670 18 H 0.064 0.936 19 C -0.165 4.165 20 N -0.558 5.558 21 Si 0.743 3.257 22 H -0.187 1.187 23 H -0.181 1.181 24 H -0.149 1.149 25 C -0.065 4.065 26 C -0.093 4.093 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.255 0.745 37 H 0.193 0.807 38 H 0.196 0.804 39 H 0.158 0.842 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.182 7.948 -26.799 27.953 hybrid contribution -1.612 0.609 1.390 2.214 sum -1.430 8.557 -25.408 26.849 Atomic orbital electron populations 1.22557 0.87241 1.02679 1.01017 1.64759 1.08812 1.15455 1.36663 1.22926 0.95778 0.89544 1.01216 1.22408 0.98429 0.95285 0.99999 1.22251 0.96723 0.98142 0.93990 0.87571 1.21436 1.01067 0.81811 0.95022 1.45680 1.66853 1.09936 1.13357 1.18382 0.76325 0.88174 0.82180 1.90762 1.52803 1.48792 1.54079 1.19960 1.07258 0.93623 0.95518 1.21761 0.95077 0.91443 0.99392 1.21577 0.99154 0.97760 0.95553 1.22094 0.93314 0.98997 0.93529 1.22073 1.06436 0.95662 0.98905 1.82617 1.14109 1.91613 0.99868 1.22374 0.91744 1.57613 0.95286 0.93618 1.25743 1.00651 0.92885 0.97250 1.70031 1.27906 1.48559 1.09268 0.85762 0.79668 0.80208 0.80062 1.18745 1.18103 1.14937 1.21645 0.93965 0.95614 0.95318 1.23420 0.94230 1.00671 0.90991 0.90466 0.90810 0.95709 0.93744 0.89392 0.91079 0.89086 0.92748 0.91347 0.74479 0.80739 0.80442 0.84201 0.91254 0.87633 0.88799 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.40 127.69 1.20 1.36 16 2 N -0.53 -7.00 5.55 -908.60 -5.04 -12.04 16 3 C 0.03 0.37 6.70 86.45 0.58 0.95 16 4 C -0.12 -1.27 6.51 31.47 0.20 -1.07 16 5 C -0.09 -1.05 3.09 -9.59 -0.03 -1.08 16 6 H 0.11 0.99 8.14 -2.39 -0.02 0.98 16 7 C 0.13 2.27 4.99 86.38 0.43 2.70 16 8 N -0.71 -13.72 5.38 -465.95 -2.51 -16.23 16 9 C 0.56 17.34 7.77 86.79 0.67 18.01 16 10 O -0.58 -23.74 16.34 -3.88 -0.06 -23.80 16 11 C -0.16 -5.04 5.87 -20.11 -0.12 -5.16 16 12 C -0.06 -1.27 9.54 22.57 0.22 -1.05 16 13 C -0.12 -2.77 10.02 22.21 0.22 -2.55 16 14 C -0.06 -1.94 9.79 22.48 0.22 -1.72 16 15 C -0.12 -5.10 5.45 22.65 0.12 -4.97 16 16 S -0.12 -5.82 19.38 -56.49 -1.09 -6.91 16 17 C -0.52 -31.66 10.01 67.94 0.68 -30.98 16 18 H 0.05 3.06 8.02 -2.91 -0.02 3.04 16 19 C 0.04 2.37 5.50 84.84 0.47 2.84 16 20 N -0.92 -57.55 13.97 21.64 0.30 -57.24 16 21 Si 0.92 44.39 27.74 68.60 1.90 46.29 16 22 H -0.26 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.23 -10.31 6.74 99.48 0.67 -9.64 16 25 C -0.04 -1.81 9.34 22.70 0.21 -1.60 16 26 C 0.03 0.44 5.84 86.61 0.51 0.95 16 27 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.02 0.30 8.01 -2.39 -0.02 0.29 16 30 H 0.04 0.51 7.73 -2.39 -0.02 0.49 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.79 7.85 -2.39 -0.02 0.77 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.05 1.14 8.05 -2.38 -0.02 1.12 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.42 5.02 6.43 -92.71 -0.60 4.42 16 37 H 0.18 1.86 6.40 -2.91 -0.02 1.84 16 38 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 39 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 40 H 0.28 15.95 8.31 -92.71 -0.77 15.18 16 41 H 0.11 4.99 7.65 -2.91 -0.02 4.97 16 42 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.04 0.58 7.81 -2.39 -0.02 0.57 16 Total: -1.00 -79.34 368.49 -0.54 -79.88 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.38 Total: 13.42 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 5.59 Total: -23.37 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -7.25 Total: -85.51 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.06 Total: -23.80 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.90 Total: 46.29 kcal Atomic # 16 Polarization: -5.82 SS G_CDS: -1.09 Total: -6.91 kcal Total: -79.34 -0.54 -79.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079541447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.065 kcal (2) G-P(sol) polarization free energy of solvation -79.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds