Wall clock time and date at job start Tue Mar 31 2020 12:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81403 * 102.99963 * 2 1 4 4 C 1.52995 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.87145 * 52.69342 * 4 3 2 6 6 C 1.54320 * 109.88125 * 173.87077 * 4 3 2 7 7 C 1.55160 * 102.94434 * 141.61513 * 6 4 3 8 8 C 1.55131 * 101.48089 * 324.33121 * 7 6 4 9 9 N 1.47020 * 109.88476 * 291.67984 * 4 3 2 10 10 C 1.34774 * 125.64801 * 61.60513 * 9 4 3 11 11 O 1.21577 * 120.00523 * 7.02661 * 10 9 4 12 12 N 1.34783 * 120.00197 * 186.75483 * 10 9 4 13 13 C 1.39236 * 120.00199 * 175.00297 * 12 10 9 14 14 C 1.39484 * 119.83463 * 215.41995 * 13 12 10 15 15 C 1.36370 * 120.16828 * 179.75726 * 14 13 12 16 16 C 1.40867 * 119.82829 * 0.52677 * 15 14 13 17 17 C 1.41160 * 120.16368 * 179.71304 * 16 15 14 18 18 H 1.07994 * 119.99781 * 208.00927 * 17 16 15 19 19 C 1.39894 * 119.99987 * 28.00707 * 17 16 15 20 20 N 1.30883 * 119.99848 * 8.66308 * 19 17 16 21 21 Si 1.86802 * 119.99866 * 188.65729 * 19 17 16 22 22 H 1.48497 * 109.46670 * 90.00407 * 21 19 17 23 23 H 1.48506 * 109.46725 * 210.00200 * 21 19 17 24 24 H 1.48492 * 109.47392 * 330.00170 * 21 19 17 25 25 C 1.40868 * 119.67563 * 359.73332 * 16 15 14 26 26 C 1.36381 * 119.82547 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.47197 * 299.99643 * 1 2 3 28 28 H 1.08996 * 109.47031 * 60.00689 * 1 2 3 29 29 H 1.09004 * 109.46822 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46685 * 59.99704 * 3 2 1 31 31 H 1.08994 * 109.47090 * 300.00400 * 3 2 1 32 32 H 1.09004 * 110.71791 * 259.97082 * 6 4 3 33 33 H 1.08996 * 110.72442 * 23.24702 * 6 4 3 34 34 H 1.09002 * 111.00433 * 82.56796 * 7 6 4 35 35 H 1.09000 * 111.00704 * 206.38871 * 7 6 4 36 36 H 1.09005 * 110.50037 * 278.45207 * 8 7 6 37 37 H 1.09002 * 110.34103 * 156.06064 * 8 7 6 38 38 H 0.97003 * 119.99592 * 355.00833 * 12 10 9 39 39 H 1.08001 * 119.91046 * 0.03266 * 14 13 12 40 40 H 1.08000 * 120.08551 * 180.25564 * 15 14 13 41 41 H 0.96998 * 119.99392 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.08905 * 180.02562 * 25 16 15 43 43 H 1.07997 * 119.91747 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.1808 1.3643 -0.8145 6 6 4.1011 3.4329 -0.1543 7 6 5.3230 3.5962 0.7880 8 6 4.9510 2.6331 1.9457 9 7 4.2961 1.4890 1.2857 10 6 4.2138 0.2382 1.7809 11 8 3.7571 -0.6574 1.0973 12 7 4.6428 -0.0209 3.0320 13 6 4.4630 -1.2876 3.5814 14 6 4.1869 -1.4210 4.9421 15 6 4.0046 -2.6581 5.4863 16 6 4.1069 -3.8035 4.6727 17 6 3.9256 -5.0878 5.2298 18 1 4.4172 -5.9421 4.7885 19 6 3.1091 -5.2538 6.3536 20 7 2.3810 -4.2561 6.7866 21 14 3.0581 -6.8995 7.2359 22 1 4.0979 -6.9253 8.2957 23 1 1.7197 -7.0901 7.8508 24 1 3.3158 -7.9911 6.2629 25 6 4.3914 -3.6610 3.3004 26 6 4.5663 -2.4170 2.7695 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8030 2.2371 0.8900 31 1 1.8031 2.2371 -0.8899 32 1 4.3760 3.6585 -1.1847 33 1 3.2749 4.0641 0.1726 34 1 6.2423 3.2818 0.2938 35 1 5.4057 4.6223 1.1463 36 1 4.2620 3.1167 2.6383 37 1 5.8491 2.3056 2.4696 38 1 5.0768 0.6752 3.5498 39 1 4.1128 -0.5421 5.5653 40 1 3.7868 -2.7596 6.5392 41 1 1.8146 -4.3714 7.5656 42 1 4.4709 -4.5346 2.6704 43 1 4.7841 -2.3061 1.7175 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121100766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:16 Heat of formation + Delta-G solvation = 9.705532 kcal Electronic energy + Delta-G solvation = -24700.727017 eV Core-core repulsion = 21258.410547 eV Total energy + Delta-G solvation = -3442.316470 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.29022 -38.24452 -36.80385 -34.36543 -33.00914 -31.52302 -31.41092 -29.43631 -28.61538 -28.46974 -26.01141 -24.94076 -22.93614 -21.64169 -21.11331 -20.34942 -19.05600 -17.93869 -17.22217 -16.72122 -16.13567 -15.60844 -15.16579 -15.03682 -14.48453 -14.00081 -13.81918 -13.75330 -13.35285 -13.20429 -13.02529 -12.86263 -12.72910 -12.65956 -12.57531 -12.01495 -11.88999 -11.64036 -11.52277 -11.20679 -11.07229 -11.05442 -10.95323 -10.90486 -10.65086 -10.10050 -9.59507 -9.41530 -9.23538 -9.05500 -8.65270 -8.35951 -7.41906 -6.89616 -6.65790 -6.55204 -4.21961 2.07491 2.74269 2.91974 3.03506 3.12649 3.16492 3.19648 3.26455 3.81894 4.01600 4.25489 4.32219 4.60190 4.63841 4.77100 4.90341 5.02555 5.17878 5.28425 5.41938 5.42247 5.43780 5.50211 5.52083 5.60308 5.79452 5.81425 5.98434 6.04113 6.27558 6.34501 6.58044 6.90435 7.03020 7.15386 7.24703 7.39355 7.49456 7.74091 7.99679 8.06999 8.17375 8.40647 8.56916 8.72423 9.00634 9.03468 9.24193 10.32556 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.003290 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.087949 B = 8507.656861 C = 9332.958213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 S -0.123 6.123 3 C -0.125 4.125 4 C 0.175 3.825 5 H 0.081 0.919 6 C -0.123 4.123 7 C -0.130 4.130 8 C 0.099 3.901 9 N -0.640 5.640 10 C 0.703 3.297 11 O -0.517 6.517 12 N -0.664 5.664 13 C 0.022 3.978 14 C -0.120 4.120 15 C -0.147 4.147 16 C 0.100 3.900 17 C -0.458 4.458 18 H 0.075 0.925 19 C 0.071 3.929 20 N -0.805 5.805 21 Si 0.911 3.089 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.263 1.263 25 C -0.210 4.210 26 C -0.079 4.079 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.388 0.612 39 H 0.087 0.913 40 H 0.127 0.873 41 H 0.277 0.723 42 H 0.093 0.907 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.312 17.080 -9.216 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.357 4.357 2 S 0.102 5.898 3 C -0.274 4.274 4 C 0.069 3.931 5 H 0.099 0.901 6 C -0.163 4.163 7 C -0.168 4.168 8 C -0.025 4.025 9 N -0.381 5.381 10 C 0.405 3.595 11 O -0.393 6.393 12 N -0.310 5.310 13 C -0.070 4.070 14 C -0.141 4.141 15 C -0.167 4.167 16 C 0.098 3.902 17 C -0.489 4.489 18 H 0.093 0.907 19 C -0.145 4.145 20 N -0.432 5.432 21 Si 0.736 3.264 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.230 4.230 26 C -0.100 4.100 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.221 0.779 39 H 0.105 0.895 40 H 0.144 0.856 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.400 15.476 -9.512 18.324 hybrid contribution -1.080 0.817 0.753 1.550 sum 1.320 16.293 -8.759 18.546 Atomic orbital electron populations 1.23868 1.03554 1.05404 1.02857 1.89635 0.99043 1.04007 1.97091 1.24045 0.99405 0.99765 1.04208 1.21007 0.90555 0.94772 0.86755 0.90098 1.22698 0.98525 0.94176 1.00863 1.22786 0.98296 0.99619 0.96083 1.22270 0.97125 0.87411 0.95665 1.47667 1.61086 1.08030 1.21299 1.15557 0.79812 0.81378 0.82732 1.90682 1.48363 1.42148 1.58093 1.42080 1.61798 1.13252 1.13900 1.17003 1.15253 0.82020 0.92747 1.20233 1.03636 0.97302 0.92939 1.21013 1.04441 0.90774 1.00441 1.17669 0.88706 0.93475 0.90381 1.19537 1.25120 0.94458 1.09781 0.90652 1.25882 0.93824 0.98379 0.96397 1.69813 1.19833 1.32093 1.21478 0.86265 0.78086 0.82214 0.79810 1.19483 1.20419 1.18744 1.20709 1.12079 0.95308 0.94947 1.20387 0.99818 0.91440 0.98306 0.91736 0.92454 0.89014 0.90495 0.90131 0.89764 0.90367 0.90395 0.89876 0.91780 0.90893 0.77876 0.89461 0.85582 0.91178 0.88872 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.70 10.76 101.05 1.09 -1.61 16 2 S -0.12 -2.09 17.53 -107.50 -1.88 -3.97 16 3 C -0.12 -1.54 5.41 37.15 0.20 -1.34 16 4 C 0.17 2.01 3.08 -66.96 -0.21 1.80 16 5 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 6 C -0.12 -0.88 6.47 -24.90 -0.16 -1.04 16 7 C -0.13 -0.87 7.10 -24.46 -0.17 -1.04 16 8 C 0.10 0.92 6.50 -2.41 -0.02 0.91 16 9 N -0.64 -8.62 3.06 -168.56 -0.52 -9.14 16 10 C 0.70 12.80 7.81 -86.91 -0.68 12.12 16 11 O -0.52 -11.14 9.55 5.30 0.05 -11.09 16 12 N -0.66 -12.22 5.27 -14.10 -0.07 -12.29 16 13 C 0.02 0.51 6.30 -83.57 -0.53 -0.02 16 14 C -0.12 -2.82 9.90 -39.79 -0.39 -3.22 16 15 C -0.15 -3.85 8.61 -39.26 -0.34 -4.19 16 16 C 0.10 2.75 5.57 -106.80 -0.60 2.15 16 17 C -0.46 -12.50 9.06 -37.85 -0.34 -12.84 16 18 H 0.08 1.98 7.86 -52.49 -0.41 1.57 16 19 C 0.07 1.82 5.29 -17.34 -0.09 1.73 16 20 N -0.81 -21.32 10.67 55.55 0.59 -20.72 16 21 Si 0.91 19.24 29.57 -169.99 -5.03 14.21 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 25 C -0.21 -5.48 9.74 -39.26 -0.38 -5.86 16 26 C -0.08 -1.95 8.62 -39.79 -0.34 -2.29 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 30 H 0.08 0.97 8.14 -51.92 -0.42 0.54 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.50 7.85 -51.93 -0.41 0.09 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 38 H 0.39 5.81 7.41 -40.82 -0.30 5.51 16 39 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.13 3.40 6.07 -52.49 -0.32 3.09 16 41 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 42 H 0.09 2.33 8.06 -52.49 -0.42 1.90 16 43 H 0.11 2.65 6.22 -52.49 -0.33 2.33 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -31.29 355.91 -10.82 -42.11 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.36 Total: 10.27 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -2.96 Total: -14.74 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.00 Total: -42.15 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.05 Total: -11.09 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Atomic # 16 Polarization: -2.09 SS G_CDS: -1.88 Total: -3.97 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.29 -10.82 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121100766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.814 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds