Wall clock time and date at job start Tue Mar 31 2020 12:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81403 * 102.99963 * 2 1 4 4 C 1.52995 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.87145 * 52.69342 * 4 3 2 6 6 C 1.54320 * 109.88125 * 173.87077 * 4 3 2 7 7 C 1.55160 * 102.94434 * 141.61513 * 6 4 3 8 8 C 1.55131 * 101.48089 * 324.33121 * 7 6 4 9 9 N 1.47020 * 109.88476 * 291.67984 * 4 3 2 10 10 C 1.34774 * 125.64801 * 61.60513 * 9 4 3 11 11 O 1.21577 * 120.00523 * 7.02661 * 10 9 4 12 12 N 1.34783 * 120.00197 * 186.75483 * 10 9 4 13 13 C 1.39236 * 120.00199 * 175.00297 * 12 10 9 14 14 C 1.39484 * 119.83463 * 215.41995 * 13 12 10 15 15 C 1.36370 * 120.16828 * 179.75726 * 14 13 12 16 16 C 1.40867 * 119.82829 * 0.52677 * 15 14 13 17 17 C 1.41160 * 120.16368 * 179.71304 * 16 15 14 18 18 H 1.07994 * 119.99781 * 208.00927 * 17 16 15 19 19 C 1.39894 * 119.99987 * 28.00707 * 17 16 15 20 20 N 1.30883 * 119.99848 * 8.66308 * 19 17 16 21 21 Si 1.86802 * 119.99866 * 188.65729 * 19 17 16 22 22 H 1.48497 * 109.46670 * 90.00407 * 21 19 17 23 23 H 1.48506 * 109.46725 * 210.00200 * 21 19 17 24 24 H 1.48492 * 109.47392 * 330.00170 * 21 19 17 25 25 C 1.40868 * 119.67563 * 359.73332 * 16 15 14 26 26 C 1.36381 * 119.82547 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.47197 * 299.99643 * 1 2 3 28 28 H 1.08996 * 109.47031 * 60.00689 * 1 2 3 29 29 H 1.09004 * 109.46822 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46685 * 59.99704 * 3 2 1 31 31 H 1.08994 * 109.47090 * 300.00400 * 3 2 1 32 32 H 1.09004 * 110.71791 * 259.97082 * 6 4 3 33 33 H 1.08996 * 110.72442 * 23.24702 * 6 4 3 34 34 H 1.09002 * 111.00433 * 82.56796 * 7 6 4 35 35 H 1.09000 * 111.00704 * 206.38871 * 7 6 4 36 36 H 1.09005 * 110.50037 * 278.45207 * 8 7 6 37 37 H 1.09002 * 110.34103 * 156.06064 * 8 7 6 38 38 H 0.97003 * 119.99592 * 355.00833 * 12 10 9 39 39 H 1.08001 * 119.91046 * 0.03266 * 14 13 12 40 40 H 1.08000 * 120.08551 * 180.25564 * 15 14 13 41 41 H 0.96998 * 119.99392 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.08905 * 180.02562 * 25 16 15 43 43 H 1.07997 * 119.91747 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.1808 1.3643 -0.8145 6 6 4.1011 3.4329 -0.1543 7 6 5.3230 3.5962 0.7880 8 6 4.9510 2.6331 1.9457 9 7 4.2961 1.4890 1.2857 10 6 4.2138 0.2382 1.7809 11 8 3.7571 -0.6574 1.0973 12 7 4.6428 -0.0209 3.0320 13 6 4.4630 -1.2876 3.5814 14 6 4.1869 -1.4210 4.9421 15 6 4.0046 -2.6581 5.4863 16 6 4.1069 -3.8035 4.6727 17 6 3.9256 -5.0878 5.2298 18 1 4.4172 -5.9421 4.7885 19 6 3.1091 -5.2538 6.3536 20 7 2.3810 -4.2561 6.7866 21 14 3.0581 -6.8995 7.2359 22 1 4.0979 -6.9253 8.2957 23 1 1.7197 -7.0901 7.8508 24 1 3.3158 -7.9911 6.2629 25 6 4.3914 -3.6610 3.3004 26 6 4.5663 -2.4170 2.7695 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8030 2.2371 0.8900 31 1 1.8031 2.2371 -0.8899 32 1 4.3760 3.6585 -1.1847 33 1 3.2749 4.0641 0.1726 34 1 6.2423 3.2818 0.2938 35 1 5.4057 4.6223 1.1463 36 1 4.2620 3.1167 2.6383 37 1 5.8491 2.3056 2.4696 38 1 5.0768 0.6752 3.5498 39 1 4.1128 -0.5421 5.5653 40 1 3.7868 -2.7596 6.5392 41 1 1.8146 -4.3714 7.5656 42 1 4.4709 -4.5346 2.6704 43 1 4.7841 -2.3061 1.7175 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121100766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:15 Heat of formation + Delta-G solvation = -7.730225 kcal Electronic energy + Delta-G solvation = -24701.483088 eV Core-core repulsion = 21258.410547 eV Total energy + Delta-G solvation = -3443.072541 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55225 -39.69819 -38.32791 -36.08799 -34.75093 -32.67348 -32.27219 -31.38360 -30.41673 -29.66097 -26.90486 -26.70684 -24.19035 -23.10575 -22.57168 -21.75739 -20.40628 -19.29585 -19.07359 -17.86894 -17.55889 -17.02942 -16.83947 -16.39097 -15.82989 -15.52157 -15.09050 -14.84303 -14.62485 -14.53404 -14.18029 -14.05612 -13.97002 -13.92135 -13.74133 -13.71460 -13.46257 -13.15868 -12.83259 -12.75490 -12.71292 -12.46872 -12.07962 -11.87495 -11.69136 -11.61234 -11.37320 -11.15354 -11.02790 -10.76161 -10.06379 -9.54274 -9.39223 -8.70869 -8.50835 -8.01590 -6.24993 0.89741 0.96358 1.20917 1.39892 1.50176 1.53652 1.74171 1.90220 2.24741 2.39145 2.83805 3.18839 3.62883 3.72029 3.78865 3.85551 4.14222 4.22504 4.33844 4.34859 4.39270 4.43201 4.56103 4.60727 4.63882 4.79765 4.88519 4.94251 4.98805 5.05509 5.14826 5.16560 5.23815 5.30797 5.38799 5.49896 5.53878 5.72354 5.91444 6.10065 6.20877 6.29297 6.45180 6.72185 6.99403 7.06459 7.15453 7.80940 8.41950 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.003290 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.087949 B = 8507.656861 C = 9332.958213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 S -0.222 6.222 3 C -0.100 4.100 4 C 0.167 3.833 5 H 0.062 0.938 6 C -0.110 4.110 7 C -0.118 4.118 8 C 0.087 3.913 9 N -0.636 5.636 10 C 0.695 3.305 11 O -0.555 6.555 12 N -0.661 5.661 13 C 0.044 3.956 14 C -0.120 4.120 15 C -0.163 4.163 16 C 0.069 3.931 17 C -0.497 4.497 18 H 0.071 0.929 19 C 0.030 3.970 20 N -0.835 5.835 21 Si 0.987 3.013 22 H -0.259 1.259 23 H -0.269 1.269 24 H -0.263 1.263 25 C -0.227 4.227 26 C -0.088 4.088 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.406 0.594 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.286 0.714 42 H 0.090 0.910 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.373 20.197 -9.283 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.337 4.337 2 S 0.003 5.997 3 C -0.249 4.249 4 C 0.062 3.938 5 H 0.081 0.919 6 C -0.149 4.149 7 C -0.156 4.156 8 C -0.035 4.035 9 N -0.376 5.376 10 C 0.397 3.603 11 O -0.433 6.433 12 N -0.309 5.309 13 C -0.050 4.050 14 C -0.140 4.140 15 C -0.183 4.183 16 C 0.067 3.933 17 C -0.528 4.528 18 H 0.089 0.911 19 C -0.183 4.183 20 N -0.463 5.463 21 Si 0.807 3.193 22 H -0.183 1.183 23 H -0.193 1.193 24 H -0.187 1.187 25 C -0.248 4.248 26 C -0.109 4.109 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.243 0.757 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.484 18.680 -9.602 21.150 hybrid contribution -1.105 0.057 0.630 1.273 sum 1.379 18.737 -8.972 20.820 Atomic orbital electron populations 1.23722 1.00669 1.05241 1.04093 1.89927 1.02265 1.10078 1.97391 1.24054 1.00107 0.95214 1.05556 1.21305 0.89724 0.97575 0.85218 0.91940 1.22720 0.99287 0.90454 1.02458 1.22795 0.97892 1.00370 0.94584 1.22631 0.97336 0.86519 0.96965 1.47669 1.60507 1.07324 1.22062 1.15756 0.79540 0.82793 0.82227 1.90717 1.49566 1.44124 1.58862 1.41889 1.62386 1.12083 1.14532 1.16998 1.12212 0.83431 0.92388 1.20464 1.02537 0.97454 0.93564 1.21002 1.05627 0.91686 0.99960 1.17968 0.89976 0.94367 0.91020 1.19760 1.26877 0.94465 1.11672 0.91113 1.26730 0.92696 1.02390 0.96452 1.69867 1.20223 1.34149 1.22039 0.85139 0.78625 0.77049 0.78442 1.18331 1.19334 1.18702 1.20816 1.13026 0.96027 0.94882 1.20448 1.00306 0.91732 0.98388 0.91576 0.89979 0.89998 0.90320 0.87272 0.87630 0.88658 0.90373 0.86835 0.90508 0.90403 0.75714 0.86275 0.86702 0.90389 0.89219 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.75 10.76 113.37 1.22 -3.53 16 2 S -0.22 -7.63 17.53 -56.49 -0.99 -8.62 16 3 C -0.10 -2.27 5.41 71.98 0.39 -1.88 16 4 C 0.17 3.46 3.08 45.34 0.14 3.60 16 5 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 6 C -0.11 -1.08 6.47 31.78 0.21 -0.88 16 7 C -0.12 -1.04 7.10 32.06 0.23 -0.82 16 8 C 0.09 1.34 6.50 86.93 0.56 1.90 16 9 N -0.64 -15.99 3.06 -805.46 -2.47 -18.46 16 10 C 0.69 25.06 7.81 179.05 1.40 26.46 16 11 O -0.55 -24.53 9.55 -3.96 -0.04 -24.57 16 12 N -0.66 -23.77 5.27 -316.78 -1.67 -25.44 16 13 C 0.04 2.02 6.30 38.57 0.24 2.26 16 14 C -0.12 -5.61 9.90 22.13 0.22 -5.39 16 15 C -0.16 -8.80 8.61 22.48 0.19 -8.60 16 16 C 0.07 3.97 5.57 -21.27 -0.12 3.85 16 17 C -0.50 -28.32 9.06 23.39 0.21 -28.11 16 18 H 0.07 3.92 7.86 -2.91 -0.02 3.89 16 19 C 0.03 1.57 5.29 85.24 0.45 2.03 16 20 N -0.84 -45.21 10.67 21.82 0.23 -44.98 16 21 Si 0.99 39.98 29.57 68.60 2.03 42.01 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 23 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 24 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 25 C -0.23 -12.49 9.74 22.48 0.22 -12.27 16 26 C -0.09 -4.51 8.62 22.14 0.19 -4.32 16 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.69 7.85 -2.39 -0.02 0.67 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.08 1.13 7.48 -2.39 -0.02 1.11 16 38 H 0.41 11.41 7.41 -92.71 -0.69 10.72 16 39 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 40 H 0.12 6.41 6.07 -2.91 -0.02 6.39 16 41 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 42 H 0.09 4.80 8.06 -2.91 -0.02 4.78 16 43 H 0.11 5.39 6.22 -2.91 -0.02 5.37 16 Total: -1.00 -72.95 355.91 3.18 -69.77 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.33 Total: 35.99 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 5.76 Total: -25.71 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -3.90 Total: -88.88 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.04 Total: -24.57 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Atomic # 16 Polarization: -7.63 SS G_CDS: -0.99 Total: -8.62 kcal Total: -72.95 3.18 -69.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121100766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.039 kcal (2) G-P(sol) polarization free energy of solvation -72.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds