Wall clock time and date at job start Tue Mar 31 2020 12:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99832 * 2 1 4 4 H 1.09006 * 109.46999 * 329.99221 * 3 2 1 5 5 C 1.52990 * 109.47570 * 89.99807 * 3 2 1 6 6 C 1.52997 * 109.47366 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47229 * 299.99921 * 6 5 3 8 8 C 1.53002 * 109.46719 * 59.99929 * 7 6 5 9 9 H 1.08997 * 109.46709 * 180.02562 * 8 7 6 10 10 O 1.45197 * 109.47301 * 60.00052 * 8 7 6 11 11 C 1.34765 * 116.99811 * 90.00003 * 10 8 7 12 12 O 1.21507 * 119.99938 * 359.97438 * 11 10 8 13 13 C 1.47393 * 119.99847 * 179.97438 * 11 10 8 14 14 C 1.39733 * 120.20552 * 359.72835 * 13 11 10 15 15 C 1.37803 * 119.91568 * 179.67408 * 14 13 11 16 16 C 1.38586 * 120.32932 * 0.62332 * 15 14 13 17 17 C 1.38027 * 120.41546 * 359.67214 * 16 15 14 18 18 C 1.38833 * 120.07799 * 0.02562 * 17 16 15 19 19 O 1.35498 * 120.16738 * 180.02562 * 18 17 16 20 20 C 1.34811 * 116.99887 * 354.40221 * 19 18 17 21 21 H 1.07995 * 120.00212 * 5.06433 * 20 19 18 22 22 C 1.38702 * 119.99701 * 185.06312 * 20 19 18 23 23 N 1.31513 * 120.00580 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99800 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47670 * 89.99856 * 24 22 20 26 26 H 1.48506 * 109.47147 * 210.00264 * 24 22 20 27 27 H 1.48501 * 109.46973 * 329.99779 * 24 22 20 28 28 C 1.53002 * 109.47076 * 299.99787 * 8 7 6 29 29 H 1.08997 * 109.47315 * 300.00386 * 1 2 3 30 30 H 1.09000 * 109.47225 * 60.00524 * 1 2 3 31 31 H 1.09008 * 109.46765 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47347 * 59.99852 * 5 3 2 33 33 H 1.09007 * 109.47129 * 300.00182 * 5 3 2 34 34 H 1.08997 * 109.47383 * 179.97438 * 6 5 3 35 35 H 1.09010 * 109.46832 * 59.99941 * 6 5 3 36 36 H 1.08997 * 109.46921 * 299.99777 * 7 6 5 37 37 H 1.08995 * 109.47143 * 179.97438 * 7 6 5 38 38 H 1.08005 * 120.04038 * 359.97438 * 14 13 11 39 39 H 1.07997 * 119.83923 * 180.33561 * 15 14 13 40 40 H 1.08005 * 119.79366 * 179.69585 * 16 15 14 41 41 H 1.08000 * 119.96097 * 180.02562 * 17 16 15 42 42 H 0.96999 * 120.00599 * 180.02562 * 23 22 20 43 43 H 1.08998 * 109.47017 * 180.02562 * 28 8 7 44 44 H 1.08997 * 109.47295 * 300.00599 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5140 5 6 2.2176 1.7715 1.4424 6 6 2.8404 3.1689 1.4423 7 6 4.1893 3.1261 0.7213 8 6 3.9818 2.6601 -0.7212 9 1 4.9427 2.6292 -1.2347 10 8 3.0960 3.5847 -1.4059 11 6 3.6704 4.6253 -2.0410 12 8 4.8782 4.7567 -2.0227 13 6 2.8334 5.6041 -2.7579 14 6 1.4445 5.4541 -2.7865 15 6 0.6672 6.3764 -3.4528 16 6 1.2569 7.4466 -4.1067 17 6 2.6280 7.6047 -4.0924 18 6 3.4270 6.6891 -3.4211 19 8 4.7732 6.8428 -3.4054 20 6 5.2842 7.8388 -4.1566 21 1 4.6234 8.5215 -4.6700 22 6 6.6586 7.9867 -4.2700 23 7 7.4634 7.1550 -3.6452 24 14 7.3668 9.3672 -5.3103 25 1 7.5561 10.5751 -4.4675 26 1 8.6756 8.9439 -5.8700 27 1 6.4316 9.6800 -6.4206 28 6 3.3590 1.2626 -0.7211 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 2.8828 1.0777 1.9563 33 1 1.2567 1.8015 1.9562 34 1 2.9878 3.5011 2.4699 35 1 2.1754 3.8631 0.9282 36 1 4.8541 2.4321 1.2353 37 1 4.6327 4.1218 0.7208 38 1 0.9804 4.6189 -2.2829 39 1 -0.4066 6.2623 -3.4696 40 1 0.6397 8.1617 -4.6304 41 1 3.0798 8.4417 -4.6040 42 1 8.4246 7.2586 -3.7242 43 1 3.2116 0.9304 -1.7487 44 1 4.0238 0.5685 -0.2070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194073651.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:23 Heat of formation + Delta-G solvation = -142.946824 kcal Electronic energy + Delta-G solvation = -27503.434408 eV Core-core repulsion = 23579.452813 eV Total energy + Delta-G solvation = -3923.981595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.21105 -39.21653 -38.33061 -36.53836 -36.32390 -34.71770 -32.43276 -30.95197 -30.40598 -29.56317 -28.98593 -26.54795 -25.51591 -23.87637 -22.51657 -22.22026 -21.62493 -20.62458 -19.13723 -18.09323 -17.63886 -16.72223 -16.52722 -15.95165 -15.61467 -15.21620 -15.13958 -14.71672 -14.45327 -14.36103 -13.97369 -13.86973 -13.66770 -13.36017 -13.01575 -12.92156 -12.57342 -12.45236 -12.27986 -11.89214 -11.78193 -11.63611 -11.41613 -11.15951 -11.04276 -10.99930 -10.91302 -10.82532 -10.66309 -10.51039 -10.27117 -9.96554 -9.76134 -9.46325 -9.24650 -8.95380 -8.35176 -7.40599 -6.53179 -4.13084 1.58416 2.27922 3.07350 3.08638 3.13370 3.27741 3.45072 3.63599 3.86977 4.52526 4.66736 4.72722 4.96518 4.99224 5.06824 5.10806 5.12190 5.23931 5.27787 5.31811 5.40343 5.44020 5.52443 5.54112 5.58412 5.62723 5.68581 5.83563 5.91971 5.95929 6.06476 6.08932 6.10820 6.21550 6.28154 6.38184 6.54846 6.63312 6.87254 6.99527 7.10265 7.13549 7.20691 7.29556 7.62990 7.85175 8.73496 8.87060 9.55946 10.60442 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.003532 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.142331 B = 7925.634113 C = 9054.505440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.091 3.909 4 H 0.072 0.928 5 C -0.137 4.137 6 C -0.114 4.114 7 C -0.137 4.137 8 C 0.094 3.906 9 H 0.090 0.910 10 O -0.359 6.359 11 C 0.497 3.503 12 O -0.476 6.476 13 C -0.216 4.216 14 C -0.016 4.016 15 C -0.235 4.235 16 C -0.044 4.044 17 C -0.239 4.239 18 C 0.191 3.809 19 O -0.125 6.125 20 C -0.404 4.404 21 H 0.096 0.904 22 C 0.045 3.955 23 N -0.831 5.831 24 Si 0.942 3.058 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.265 1.265 28 C -0.109 4.109 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.273 0.727 43 H 0.077 0.923 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.902 -8.333 6.361 15.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.033 3.967 4 H 0.090 0.910 5 C -0.175 4.175 6 C -0.152 4.152 7 C -0.175 4.175 8 C 0.039 3.961 9 H 0.108 0.892 10 O -0.279 6.279 11 C 0.342 3.658 12 O -0.362 6.362 13 C -0.219 4.219 14 C -0.034 4.034 15 C -0.254 4.254 16 C -0.062 4.062 17 C -0.258 4.258 18 C 0.131 3.869 19 O -0.023 6.023 20 C -0.479 4.479 21 H 0.113 0.887 22 C -0.163 4.163 23 N -0.462 5.462 24 Si 0.766 3.234 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.190 1.190 28 C -0.146 4.146 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.151 0.849 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.888 -8.648 6.534 15.363 hybrid contribution 0.193 0.958 -0.486 1.091 sum -10.695 -7.690 6.048 14.494 Atomic orbital electron populations 1.22753 0.81380 1.02330 1.00018 1.87871 1.19455 1.28389 1.95116 1.22121 0.95040 0.84145 0.95381 0.90993 1.22013 1.01130 0.97330 0.97001 1.21428 0.96824 0.96545 1.00378 1.21966 0.97857 1.02973 0.94692 1.22477 0.94201 0.87004 0.92443 0.89179 1.86564 1.41226 1.36407 1.63676 1.21090 0.87366 0.80182 0.77135 1.90988 1.14660 1.72955 1.57631 1.18042 0.92704 0.98264 1.12869 1.20931 0.91364 0.96806 0.94315 1.20529 0.98812 0.98837 1.07235 1.20962 0.94095 0.95975 0.95206 1.21115 0.93733 1.02944 1.08031 1.19236 0.85296 0.91115 0.91222 1.84140 1.14206 1.47447 1.56462 1.21529 0.91275 1.07365 1.27733 0.88662 1.25411 0.95003 0.98501 0.97381 1.70110 1.04159 1.34197 1.37774 0.85700 0.78821 0.79503 0.79347 1.19665 1.20057 1.18971 1.21675 0.96088 0.94987 1.01860 0.94244 0.93923 0.89975 0.91356 0.92020 0.91722 0.91060 0.90516 0.90695 0.85960 0.87055 0.86991 0.84855 0.91712 0.90450 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.38 16 2 O -0.39 -4.69 10.35 -35.23 -0.36 -5.05 16 3 C 0.09 1.09 2.47 -26.73 -0.07 1.02 16 4 H 0.07 0.91 7.32 -51.93 -0.38 0.52 16 5 C -0.14 -1.49 5.54 -26.74 -0.15 -1.64 16 6 C -0.11 -1.37 5.78 -26.73 -0.15 -1.52 16 7 C -0.14 -1.90 5.65 -26.73 -0.15 -2.05 16 8 C 0.09 1.45 2.75 -26.73 -0.07 1.38 16 9 H 0.09 1.56 7.16 -51.93 -0.37 1.19 16 10 O -0.36 -6.42 7.79 -40.67 -0.32 -6.74 16 11 C 0.50 11.07 7.86 34.46 0.27 11.35 16 12 O -0.48 -12.61 14.43 -26.59 -0.38 -13.00 16 13 C -0.22 -4.75 5.89 -104.83 -0.62 -5.37 16 14 C -0.02 -0.28 9.61 -39.18 -0.38 -0.66 16 15 C -0.24 -3.87 10.02 -39.61 -0.40 -4.26 16 16 C -0.04 -0.76 10.03 -39.53 -0.40 -1.16 16 17 C -0.24 -5.03 9.16 -39.44 -0.36 -5.39 16 18 C 0.19 4.67 6.66 -38.57 -0.26 4.42 16 19 O -0.12 -3.60 7.84 -20.98 -0.16 -3.77 16 20 C -0.40 -11.17 9.49 30.90 0.29 -10.88 16 21 H 0.10 2.38 5.21 -52.49 -0.27 2.11 16 22 C 0.05 1.23 5.49 -17.52 -0.10 1.14 16 23 N -0.83 -24.51 13.67 55.48 0.76 -23.75 16 24 Si 0.94 20.08 29.55 -169.99 -5.02 15.05 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 28 C -0.11 -1.39 5.32 -26.73 -0.14 -1.53 16 29 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 30 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.61 7.87 -51.92 -0.41 0.20 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.94 7.68 -51.92 -0.40 0.54 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.12 1.86 7.61 -52.48 -0.40 1.46 16 39 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 363.35 15.07 5.48 5.48 Total: -1.00 -32.55 363.35 -7.89 -40.44 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.30 Total: 5.10 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -1.58 Total: -13.77 kcal Atomic # 7 Polarization: -24.51 SS G_CDS: 0.76 Total: -23.75 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -1.23 Total: -28.55 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.55 -7.89 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194073651.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.504 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds