Wall clock time and date at job start Tue Mar 31 2020 12:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99832 * 2 1 4 4 H 1.09006 * 109.46999 * 329.99221 * 3 2 1 5 5 C 1.52990 * 109.47570 * 89.99807 * 3 2 1 6 6 C 1.52997 * 109.47366 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47229 * 299.99921 * 6 5 3 8 8 C 1.53002 * 109.46719 * 59.99929 * 7 6 5 9 9 H 1.08997 * 109.46709 * 180.02562 * 8 7 6 10 10 O 1.45197 * 109.47301 * 60.00052 * 8 7 6 11 11 C 1.34765 * 116.99811 * 90.00003 * 10 8 7 12 12 O 1.21507 * 119.99938 * 359.97438 * 11 10 8 13 13 C 1.47393 * 119.99847 * 179.97438 * 11 10 8 14 14 C 1.39733 * 120.20552 * 359.72835 * 13 11 10 15 15 C 1.37803 * 119.91568 * 179.67408 * 14 13 11 16 16 C 1.38586 * 120.32932 * 0.62332 * 15 14 13 17 17 C 1.38027 * 120.41546 * 359.67214 * 16 15 14 18 18 C 1.38833 * 120.07799 * 0.02562 * 17 16 15 19 19 O 1.35498 * 120.16738 * 180.02562 * 18 17 16 20 20 C 1.34811 * 116.99887 * 354.40221 * 19 18 17 21 21 H 1.07995 * 120.00212 * 5.06433 * 20 19 18 22 22 C 1.38702 * 119.99701 * 185.06312 * 20 19 18 23 23 N 1.31513 * 120.00580 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99800 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47670 * 89.99856 * 24 22 20 26 26 H 1.48506 * 109.47147 * 210.00264 * 24 22 20 27 27 H 1.48501 * 109.46973 * 329.99779 * 24 22 20 28 28 C 1.53002 * 109.47076 * 299.99787 * 8 7 6 29 29 H 1.08997 * 109.47315 * 300.00386 * 1 2 3 30 30 H 1.09000 * 109.47225 * 60.00524 * 1 2 3 31 31 H 1.09008 * 109.46765 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47347 * 59.99852 * 5 3 2 33 33 H 1.09007 * 109.47129 * 300.00182 * 5 3 2 34 34 H 1.08997 * 109.47383 * 179.97438 * 6 5 3 35 35 H 1.09010 * 109.46832 * 59.99941 * 6 5 3 36 36 H 1.08997 * 109.46921 * 299.99777 * 7 6 5 37 37 H 1.08995 * 109.47143 * 179.97438 * 7 6 5 38 38 H 1.08005 * 120.04038 * 359.97438 * 14 13 11 39 39 H 1.07997 * 119.83923 * 180.33561 * 15 14 13 40 40 H 1.08005 * 119.79366 * 179.69585 * 16 15 14 41 41 H 1.08000 * 119.96097 * 180.02562 * 17 16 15 42 42 H 0.96999 * 120.00599 * 180.02562 * 23 22 20 43 43 H 1.08998 * 109.47017 * 180.02562 * 28 8 7 44 44 H 1.08997 * 109.47295 * 300.00599 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5140 5 6 2.2176 1.7715 1.4424 6 6 2.8404 3.1689 1.4423 7 6 4.1893 3.1261 0.7213 8 6 3.9818 2.6601 -0.7212 9 1 4.9427 2.6292 -1.2347 10 8 3.0960 3.5847 -1.4059 11 6 3.6704 4.6253 -2.0410 12 8 4.8782 4.7567 -2.0227 13 6 2.8334 5.6041 -2.7579 14 6 1.4445 5.4541 -2.7865 15 6 0.6672 6.3764 -3.4528 16 6 1.2569 7.4466 -4.1067 17 6 2.6280 7.6047 -4.0924 18 6 3.4270 6.6891 -3.4211 19 8 4.7732 6.8428 -3.4054 20 6 5.2842 7.8388 -4.1566 21 1 4.6234 8.5215 -4.6700 22 6 6.6586 7.9867 -4.2700 23 7 7.4634 7.1550 -3.6452 24 14 7.3668 9.3672 -5.3103 25 1 7.5561 10.5751 -4.4675 26 1 8.6756 8.9439 -5.8700 27 1 6.4316 9.6800 -6.4206 28 6 3.3590 1.2626 -0.7211 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 2.8828 1.0777 1.9563 33 1 1.2567 1.8015 1.9562 34 1 2.9878 3.5011 2.4699 35 1 2.1754 3.8631 0.9282 36 1 4.8541 2.4321 1.2353 37 1 4.6327 4.1218 0.7208 38 1 0.9804 4.6189 -2.2829 39 1 -0.4066 6.2623 -3.4696 40 1 0.6397 8.1617 -4.6304 41 1 3.0798 8.4417 -4.6040 42 1 8.4246 7.2586 -3.7242 43 1 3.2116 0.9304 -1.7487 44 1 4.0238 0.5685 -0.2070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194073651.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:22 Heat of formation + Delta-G solvation = -162.316869 kcal Electronic energy + Delta-G solvation = -27504.274356 eV Core-core repulsion = 23579.452813 eV Total energy + Delta-G solvation = -3924.821543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.75635 -40.72304 -39.65313 -38.15177 -37.72174 -36.11058 -34.37754 -32.43360 -31.54452 -30.70917 -30.58879 -27.47276 -27.29616 -25.45062 -23.65107 -23.47193 -23.05643 -22.10873 -20.45999 -19.90376 -19.27877 -18.26044 -17.71538 -17.33340 -16.99965 -16.49853 -16.37843 -16.15606 -16.00144 -15.66313 -15.56528 -15.34547 -15.07352 -14.65384 -14.48150 -14.22561 -13.96140 -13.60454 -13.57749 -13.39707 -13.05041 -12.89862 -12.73398 -12.71830 -12.56292 -12.37289 -12.14958 -12.13673 -12.03211 -11.66971 -11.59861 -11.36406 -11.20512 -11.02992 -10.86494 -10.38002 -9.92853 -9.12405 -8.48980 -6.20241 -0.03980 0.68345 1.32575 1.43772 1.51583 1.74301 1.76530 2.13530 2.74611 2.81859 3.14476 3.36970 3.59665 3.68198 3.83345 3.93555 4.07430 4.09639 4.11868 4.24297 4.28637 4.38857 4.43451 4.51805 4.54925 4.56565 4.60068 4.63001 4.79192 4.86897 4.91803 4.96632 5.01978 5.04706 5.06182 5.11521 5.16686 5.19208 5.36939 5.46858 5.47190 5.61985 5.65740 5.92606 6.11674 6.29694 6.89874 7.02591 7.71178 8.71089 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.003532 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.142331 B = 7925.634113 C = 9054.505440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.094 3.906 4 H 0.066 0.934 5 C -0.129 4.129 6 C -0.108 4.108 7 C -0.136 4.136 8 C 0.088 3.912 9 H 0.061 0.939 10 O -0.343 6.343 11 C 0.498 3.502 12 O -0.530 6.530 13 C -0.237 4.237 14 C -0.012 4.012 15 C -0.204 4.204 16 C -0.028 4.028 17 C -0.257 4.257 18 C 0.157 3.843 19 O -0.187 6.187 20 C -0.428 4.428 21 H 0.111 0.889 22 C -0.020 4.020 23 N -0.903 5.903 24 Si 1.023 2.977 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.246 1.246 28 C -0.102 4.102 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.041 0.959 38 H 0.155 0.845 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.130 0.870 42 H 0.272 0.728 43 H 0.072 0.928 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.421 -8.538 6.468 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.036 3.964 4 H 0.084 0.916 5 C -0.167 4.167 6 C -0.146 4.146 7 C -0.173 4.173 8 C 0.033 3.967 9 H 0.079 0.921 10 O -0.261 6.261 11 C 0.346 3.654 12 O -0.421 6.421 13 C -0.240 4.240 14 C -0.030 4.030 15 C -0.222 4.222 16 C -0.046 4.046 17 C -0.276 4.276 18 C 0.102 3.898 19 O -0.090 6.090 20 C -0.504 4.504 21 H 0.128 0.872 22 C -0.219 4.219 23 N -0.538 5.538 24 Si 0.841 3.159 25 H -0.186 1.186 26 H -0.198 1.198 27 H -0.170 1.170 28 C -0.140 4.140 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.060 0.940 38 H 0.172 0.828 39 H 0.183 0.817 40 H 0.178 0.822 41 H 0.148 0.852 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.516 -8.872 6.648 19.070 hybrid contribution 1.132 0.826 -0.433 1.467 sum -14.383 -8.046 6.215 17.614 Atomic orbital electron populations 1.22967 0.79707 1.03730 1.00750 1.87844 1.21283 1.27964 1.95240 1.22024 0.94059 0.84392 0.95893 0.91570 1.21954 1.02120 0.96215 0.96388 1.21393 0.95012 0.97409 1.00773 1.21970 0.99724 1.01562 0.94071 1.22744 0.93043 0.88117 0.92839 0.92098 1.86530 1.41037 1.35474 1.63057 1.21382 0.86754 0.80718 0.76577 1.90977 1.17079 1.74360 1.59640 1.18511 0.94746 0.97842 1.12891 1.21359 0.89306 0.98185 0.94130 1.21211 1.01260 0.96423 1.03327 1.21525 0.92558 0.96670 0.93816 1.21297 0.95494 1.02483 1.08322 1.19984 0.84831 0.92756 0.92256 1.84145 1.16441 1.49212 1.59162 1.22084 0.92145 1.07864 1.28290 0.87169 1.26776 0.95111 1.01389 0.98664 1.70297 1.04317 1.37706 1.41505 0.84550 0.77959 0.75682 0.77721 1.18605 1.19801 1.16961 1.21641 0.97309 0.92821 1.02212 0.93021 0.93654 0.88359 0.90480 0.90203 0.89965 0.92343 0.88262 0.94047 0.82764 0.81707 0.82237 0.85211 0.91867 0.90961 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.59 16 2 O -0.40 -8.67 10.35 -148.98 -1.54 -10.21 16 3 C 0.09 2.05 2.47 30.59 0.08 2.13 16 4 H 0.07 1.51 7.32 -2.38 -0.02 1.49 16 5 C -0.13 -2.45 5.54 30.59 0.17 -2.28 16 6 C -0.11 -2.44 5.78 30.59 0.18 -2.26 16 7 C -0.14 -3.84 5.65 30.60 0.17 -3.67 16 8 C 0.09 2.81 2.75 30.60 0.08 2.89 16 9 H 0.06 2.32 7.16 -2.39 -0.02 2.30 16 10 O -0.34 -12.55 7.79 -56.76 -0.44 -13.00 16 11 C 0.50 23.50 7.86 70.23 0.55 24.05 16 12 O -0.53 -30.79 14.43 26.81 0.39 -30.40 16 13 C -0.24 -10.63 5.89 -20.00 -0.12 -10.74 16 14 C -0.01 -0.39 9.61 22.53 0.22 -0.17 16 15 C -0.20 -5.55 10.02 22.25 0.22 -5.33 16 16 C -0.03 -0.84 10.03 22.30 0.22 -0.62 16 17 C -0.26 -10.67 9.16 22.36 0.20 -10.47 16 18 C 0.16 8.00 6.66 22.92 0.15 8.16 16 19 O -0.19 -11.71 7.84 1.11 0.01 -11.70 16 20 C -0.43 -25.31 9.49 67.93 0.64 -24.66 16 21 H 0.11 5.78 5.21 -2.91 -0.02 5.77 16 22 C -0.02 -1.14 5.49 84.85 0.47 -0.67 16 23 N -0.90 -57.85 13.67 21.62 0.30 -57.56 16 24 Si 1.02 43.14 29.55 68.60 2.03 45.17 16 25 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 28 C -0.10 -2.55 5.32 30.60 0.16 -2.39 16 29 H 0.05 0.65 7.87 -2.39 -0.02 0.63 16 30 H 0.04 0.65 8.08 -2.39 -0.02 0.63 16 31 H 0.10 1.13 8.14 -2.38 -0.02 1.12 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.27 7.87 -2.38 -0.02 1.25 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.46 7.68 -2.38 -0.02 1.45 16 36 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.15 4.04 7.61 -2.91 -0.02 4.02 16 39 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 40 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 41 H 0.13 5.38 5.64 -2.91 -0.02 5.37 16 42 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 43 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -81.22 363.35 6.37 -74.85 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 1.00 Total: 27.27 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 4.63 Total: -24.43 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.30 Total: -57.56 kcal Atomic # 8 Polarization: -63.72 SS G_CDS: -1.59 Total: -65.30 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -81.22 6.37 -74.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194073651.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.469 kcal (2) G-P(sol) polarization free energy of solvation -81.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds