Wall clock time and date at job start Tue Mar 31 2020 12:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99734 * 2 1 4 4 H 1.08997 * 109.47548 * 329.99916 * 3 2 1 5 5 C 1.52998 * 109.47293 * 90.00173 * 3 2 1 6 6 C 1.53000 * 109.47399 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47120 * 299.99997 * 6 5 3 8 8 C 1.52998 * 109.46982 * 59.99748 * 7 6 5 9 9 H 1.08997 * 109.47033 * 60.00511 * 8 7 6 10 10 O 1.45205 * 109.46829 * 180.02562 * 8 7 6 11 11 C 1.34765 * 116.99623 * 269.99815 * 10 8 7 12 12 O 1.21514 * 120.00004 * 0.02562 * 11 10 8 13 13 C 1.47400 * 119.99643 * 180.27492 * 11 10 8 14 14 C 1.39728 * 120.20412 * 359.45292 * 13 11 10 15 15 C 1.37800 * 119.91005 * 179.71990 * 14 13 11 16 16 C 1.38590 * 120.33412 * 0.55446 * 15 14 13 17 17 C 1.38015 * 120.41302 * 359.72397 * 16 15 14 18 18 C 1.38835 * 120.07757 * 359.97438 * 17 16 15 19 19 O 1.35506 * 120.16363 * 180.02562 * 18 17 16 20 20 C 1.34811 * 117.00299 * 354.39720 * 19 18 17 21 21 H 1.08001 * 120.00044 * 5.07240 * 20 19 18 22 22 C 1.38703 * 120.00150 * 185.06481 * 20 19 18 23 23 N 1.31513 * 120.00121 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99928 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47466 * 59.99923 * 24 22 20 26 26 H 1.48506 * 109.47077 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47130 * 300.00086 * 24 22 20 28 28 C 1.52995 * 109.47087 * 299.99964 * 8 7 6 29 29 H 1.08994 * 109.47385 * 60.00686 * 1 2 3 30 30 H 1.09007 * 109.46879 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47381 * 299.99838 * 1 2 3 32 32 H 1.09002 * 109.47469 * 59.99588 * 5 3 2 33 33 H 1.09004 * 109.47238 * 299.99812 * 5 3 2 34 34 H 1.08998 * 109.47595 * 179.97438 * 6 5 3 35 35 H 1.09002 * 109.47030 * 59.99461 * 6 5 3 36 36 H 1.09002 * 109.46732 * 299.99646 * 7 6 5 37 37 H 1.09001 * 109.47216 * 179.97438 * 7 6 5 38 38 H 1.07996 * 120.04201 * 359.97432 * 14 13 11 39 39 H 1.08005 * 119.83352 * 180.29850 * 15 14 13 40 40 H 1.08003 * 119.79317 * 179.73989 * 16 15 14 41 41 H 1.08004 * 119.96206 * 180.02562 * 17 16 15 42 42 H 0.97005 * 120.00096 * 180.02562 * 23 22 20 43 43 H 1.08998 * 109.47283 * 180.02562 * 28 8 7 44 44 H 1.09006 * 109.47757 * 299.99936 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 2.8404 3.1689 1.4425 7 6 4.1892 3.1261 0.7214 8 6 3.9817 2.6602 -0.7211 9 1 3.3169 3.3544 -1.2350 10 8 5.2618 2.6191 -1.4052 11 6 5.6524 3.7417 -2.0403 12 8 4.9429 4.7280 -2.0224 13 6 6.9377 3.7714 -2.7612 14 6 7.7598 2.6416 -2.7793 15 6 8.9575 2.6742 -3.4600 16 6 9.3574 3.8263 -4.1182 17 6 8.5587 4.9518 -4.1044 18 6 7.3457 4.9360 -3.4291 19 8 6.5600 6.0399 -3.4149 20 6 7.0639 7.1573 -3.9761 21 1 8.0173 7.1245 -4.4825 22 6 6.3580 8.3490 -3.9034 23 7 5.1972 8.3891 -3.2865 24 14 7.0560 9.8970 -4.6817 25 1 7.2414 9.6782 -6.1388 26 1 6.1164 11.0266 -4.4659 27 1 8.3655 10.2171 -4.0587 28 6 3.3589 1.2628 -0.7210 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.8829 1.0775 1.9564 33 1 1.2568 1.8015 1.9564 34 1 2.9878 3.5010 2.4701 35 1 2.1755 3.8630 0.9285 36 1 4.8541 2.4320 1.2354 37 1 4.6327 4.1218 0.7210 38 1 7.4549 1.7429 -2.2639 39 1 9.5897 1.7986 -3.4772 40 1 10.2998 3.8435 -4.6455 41 1 8.8773 5.8457 -4.6201 42 1 4.7033 9.2225 -3.2360 43 1 3.2115 0.9306 -1.7486 44 1 4.0239 0.5685 -0.2071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194073682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:29 Heat of formation + Delta-G solvation = -143.658374 kcal Electronic energy + Delta-G solvation = -27062.891210 eV Core-core repulsion = 23138.878760 eV Total energy + Delta-G solvation = -3924.012450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.13431 -39.24721 -38.45130 -36.54497 -36.32792 -34.98581 -32.42283 -30.93235 -30.43460 -29.46711 -28.96260 -26.63022 -25.50280 -23.91542 -22.55801 -22.22876 -21.43516 -20.09865 -20.03428 -18.08083 -17.54647 -17.04153 -16.41918 -15.84278 -15.49852 -15.27140 -15.18976 -14.70948 -14.56351 -14.36637 -14.00359 -13.87489 -13.67103 -13.49641 -13.29692 -12.82231 -12.61150 -12.51052 -12.32889 -11.93863 -11.76951 -11.41889 -11.20229 -11.15119 -11.08806 -11.04341 -10.91442 -10.82401 -10.75944 -10.53181 -10.46150 -9.97063 -9.73336 -9.64445 -9.23798 -8.93930 -8.33272 -7.39000 -6.52238 -4.12102 1.59963 2.30136 3.05820 3.07803 3.10063 3.12312 3.45787 3.72824 3.87805 4.53144 4.59938 4.69856 4.87248 4.98591 4.99872 5.03355 5.12543 5.16695 5.19786 5.20654 5.33208 5.38279 5.45337 5.51166 5.53219 5.58048 5.71722 5.86112 5.87698 5.91462 6.01974 6.10677 6.12725 6.15090 6.27146 6.32563 6.57312 6.65167 6.88825 7.00663 7.02540 7.11737 7.22363 7.30489 7.65006 7.86128 8.73448 8.87945 9.57073 10.61361 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.003392 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.474266 B = 8252.435285 C = 9681.066186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.093 3.907 4 H 0.064 0.936 5 C -0.141 4.141 6 C -0.113 4.113 7 C -0.137 4.137 8 C 0.096 3.904 9 H 0.084 0.916 10 O -0.359 6.359 11 C 0.497 3.503 12 O -0.476 6.476 13 C -0.216 4.216 14 C -0.015 4.015 15 C -0.235 4.235 16 C -0.044 4.044 17 C -0.240 4.240 18 C 0.191 3.809 19 O -0.125 6.125 20 C -0.404 4.404 21 H 0.096 0.904 22 C 0.045 3.955 23 N -0.832 5.832 24 Si 0.942 3.058 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.268 1.268 28 C -0.111 4.111 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.273 0.727 43 H 0.077 0.923 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.633 -12.383 6.131 14.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.036 3.964 4 H 0.082 0.918 5 C -0.179 4.179 6 C -0.151 4.151 7 C -0.175 4.175 8 C 0.041 3.959 9 H 0.102 0.898 10 O -0.279 6.279 11 C 0.343 3.657 12 O -0.362 6.362 13 C -0.219 4.219 14 C -0.034 4.034 15 C -0.254 4.254 16 C -0.062 4.062 17 C -0.259 4.259 18 C 0.132 3.868 19 O -0.023 6.023 20 C -0.479 4.479 21 H 0.113 0.887 22 C -0.163 4.163 23 N -0.463 5.463 24 Si 0.766 3.234 25 H -0.193 1.193 26 H -0.201 1.201 27 H -0.193 1.193 28 C -0.149 4.149 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.143 0.857 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.152 0.848 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.240 -11.975 6.303 14.181 hybrid contribution 0.122 1.060 -0.396 1.138 sum -4.119 -10.914 5.907 13.076 Atomic orbital electron populations 1.22788 0.81166 1.02605 1.00038 1.87893 1.19540 1.27747 1.95082 1.22022 0.94441 0.84448 0.95524 0.91762 1.22075 1.01428 0.97466 0.96900 1.21416 0.96362 0.96328 1.00999 1.21965 0.97953 1.02836 0.94744 1.22354 0.84193 0.96987 0.92401 0.89755 1.86564 1.37581 1.39913 1.63800 1.21113 0.86772 0.80741 0.77093 1.90986 1.53581 1.33895 1.57770 1.18037 0.96338 0.95690 1.11837 1.20971 0.92492 0.95678 0.94235 1.20544 0.98964 0.98866 1.06985 1.20967 0.97577 0.92404 0.95269 1.21109 0.96606 1.00434 1.07716 1.19235 0.89161 0.87489 0.90947 1.84141 1.37587 1.15367 1.65210 1.21482 1.06320 0.84900 1.35203 0.88717 1.25404 0.95586 0.98611 0.96674 1.70106 1.11690 1.27739 1.36801 0.85771 0.78798 0.79412 0.79411 1.19283 1.20105 1.19285 1.21551 0.95086 0.96356 1.01897 0.93939 0.89706 0.94100 0.90819 0.91725 0.90964 0.91426 0.90944 0.90651 0.85732 0.86977 0.86967 0.84848 0.91702 0.90434 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.47 10.35 -35.23 -0.36 -4.83 16 3 C 0.09 1.07 2.61 -26.73 -0.07 1.01 16 4 H 0.06 0.72 7.79 -51.93 -0.40 0.32 16 5 C -0.14 -1.46 5.54 -26.73 -0.15 -1.61 16 6 C -0.11 -1.29 5.92 -26.73 -0.16 -1.45 16 7 C -0.14 -1.95 5.56 -26.73 -0.15 -2.10 16 8 C 0.10 1.53 2.46 -26.73 -0.07 1.46 16 9 H 0.08 1.49 7.16 -51.93 -0.37 1.12 16 10 O -0.36 -6.73 9.13 -40.67 -0.37 -7.11 16 11 C 0.50 11.34 7.86 34.46 0.27 11.61 16 12 O -0.48 -12.74 14.43 -26.59 -0.38 -13.13 16 13 C -0.22 -4.85 5.89 -104.83 -0.62 -5.46 16 14 C -0.02 -0.28 9.61 -39.19 -0.38 -0.66 16 15 C -0.23 -3.94 10.02 -39.61 -0.40 -4.33 16 16 C -0.04 -0.77 10.03 -39.53 -0.40 -1.16 16 17 C -0.24 -5.09 9.16 -39.44 -0.36 -5.45 16 18 C 0.19 4.73 6.66 -38.58 -0.26 4.47 16 19 O -0.12 -3.63 7.84 -21.01 -0.16 -3.80 16 20 C -0.40 -11.21 9.49 30.90 0.29 -10.92 16 21 H 0.10 2.37 5.21 -52.49 -0.27 2.10 16 22 C 0.05 1.24 5.49 -17.52 -0.10 1.14 16 23 N -0.83 -24.55 13.67 55.48 0.76 -23.79 16 24 Si 0.94 20.11 29.55 -169.99 -5.02 15.08 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 28 C -0.11 -1.46 5.23 -26.73 -0.14 -1.60 16 29 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.30 7.87 -51.93 -0.41 -0.11 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.12 1.97 7.61 -52.49 -0.40 1.57 16 39 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 40 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.13 2.76 5.64 -52.48 -0.30 2.46 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -32.80 365.44 -7.96 -40.76 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.34 Total: 4.99 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -1.57 Total: -13.68 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.76 Total: -23.79 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -1.28 Total: -28.86 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.80 -7.96 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194073682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.896 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds