Wall clock time and date at job start Tue Mar 31 2020 12:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99734 * 2 1 4 4 H 1.08997 * 109.47548 * 329.99916 * 3 2 1 5 5 C 1.52998 * 109.47293 * 90.00173 * 3 2 1 6 6 C 1.53000 * 109.47399 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47120 * 299.99997 * 6 5 3 8 8 C 1.52998 * 109.46982 * 59.99748 * 7 6 5 9 9 H 1.08997 * 109.47033 * 60.00511 * 8 7 6 10 10 O 1.45205 * 109.46829 * 180.02562 * 8 7 6 11 11 C 1.34765 * 116.99623 * 269.99815 * 10 8 7 12 12 O 1.21514 * 120.00004 * 0.02562 * 11 10 8 13 13 C 1.47400 * 119.99643 * 180.27492 * 11 10 8 14 14 C 1.39728 * 120.20412 * 359.45292 * 13 11 10 15 15 C 1.37800 * 119.91005 * 179.71990 * 14 13 11 16 16 C 1.38590 * 120.33412 * 0.55446 * 15 14 13 17 17 C 1.38015 * 120.41302 * 359.72397 * 16 15 14 18 18 C 1.38835 * 120.07757 * 359.97438 * 17 16 15 19 19 O 1.35506 * 120.16363 * 180.02562 * 18 17 16 20 20 C 1.34811 * 117.00299 * 354.39720 * 19 18 17 21 21 H 1.08001 * 120.00044 * 5.07240 * 20 19 18 22 22 C 1.38703 * 120.00150 * 185.06481 * 20 19 18 23 23 N 1.31513 * 120.00121 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99928 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47466 * 59.99923 * 24 22 20 26 26 H 1.48506 * 109.47077 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47130 * 300.00086 * 24 22 20 28 28 C 1.52995 * 109.47087 * 299.99964 * 8 7 6 29 29 H 1.08994 * 109.47385 * 60.00686 * 1 2 3 30 30 H 1.09007 * 109.46879 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47381 * 299.99838 * 1 2 3 32 32 H 1.09002 * 109.47469 * 59.99588 * 5 3 2 33 33 H 1.09004 * 109.47238 * 299.99812 * 5 3 2 34 34 H 1.08998 * 109.47595 * 179.97438 * 6 5 3 35 35 H 1.09002 * 109.47030 * 59.99461 * 6 5 3 36 36 H 1.09002 * 109.46732 * 299.99646 * 7 6 5 37 37 H 1.09001 * 109.47216 * 179.97438 * 7 6 5 38 38 H 1.07996 * 120.04201 * 359.97432 * 14 13 11 39 39 H 1.08005 * 119.83352 * 180.29850 * 15 14 13 40 40 H 1.08003 * 119.79317 * 179.73989 * 16 15 14 41 41 H 1.08004 * 119.96206 * 180.02562 * 17 16 15 42 42 H 0.97005 * 120.00096 * 180.02562 * 23 22 20 43 43 H 1.08998 * 109.47283 * 180.02562 * 28 8 7 44 44 H 1.09006 * 109.47757 * 299.99936 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 2.8404 3.1689 1.4425 7 6 4.1892 3.1261 0.7214 8 6 3.9817 2.6602 -0.7211 9 1 3.3169 3.3544 -1.2350 10 8 5.2618 2.6191 -1.4052 11 6 5.6524 3.7417 -2.0403 12 8 4.9429 4.7280 -2.0224 13 6 6.9377 3.7714 -2.7612 14 6 7.7598 2.6416 -2.7793 15 6 8.9575 2.6742 -3.4600 16 6 9.3574 3.8263 -4.1182 17 6 8.5587 4.9518 -4.1044 18 6 7.3457 4.9360 -3.4291 19 8 6.5600 6.0399 -3.4149 20 6 7.0639 7.1573 -3.9761 21 1 8.0173 7.1245 -4.4825 22 6 6.3580 8.3490 -3.9034 23 7 5.1972 8.3891 -3.2865 24 14 7.0560 9.8970 -4.6817 25 1 7.2414 9.6782 -6.1388 26 1 6.1164 11.0266 -4.4659 27 1 8.3655 10.2171 -4.0587 28 6 3.3589 1.2628 -0.7210 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.8829 1.0775 1.9564 33 1 1.2568 1.8015 1.9564 34 1 2.9878 3.5010 2.4701 35 1 2.1755 3.8630 0.9285 36 1 4.8541 2.4320 1.2354 37 1 4.6327 4.1218 0.7210 38 1 7.4549 1.7429 -2.2639 39 1 9.5897 1.7986 -3.4772 40 1 10.2998 3.8435 -4.6455 41 1 8.8773 5.8457 -4.6201 42 1 4.7033 9.2225 -3.2360 43 1 3.2115 0.9306 -1.7486 44 1 4.0239 0.5685 -0.2071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194073682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:29 Heat of formation + Delta-G solvation = -163.238565 kcal Electronic energy + Delta-G solvation = -27063.740271 eV Core-core repulsion = 23138.878760 eV Total energy + Delta-G solvation = -3924.861511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.72839 -40.70520 -39.80450 -38.15707 -37.74635 -36.41197 -34.37815 -32.45149 -31.55249 -30.68782 -30.54007 -27.46929 -27.35944 -25.48318 -23.67876 -23.56937 -22.94706 -21.67430 -21.15108 -19.91681 -19.24966 -18.48130 -17.84354 -17.05772 -16.95025 -16.60768 -16.32837 -16.16671 -16.09314 -15.67984 -15.59075 -15.34246 -15.16713 -14.86279 -14.45426 -14.30433 -14.11149 -13.64917 -13.59144 -13.57818 -13.03701 -12.77130 -12.72668 -12.54158 -12.42676 -12.33852 -12.21661 -12.15354 -12.10219 -11.83548 -11.63260 -11.52594 -11.26756 -11.03573 -10.85252 -10.51955 -9.93297 -9.12635 -8.48846 -6.20127 -0.05026 0.68387 1.32638 1.45409 1.50310 1.61377 1.73877 2.13837 2.74584 2.81654 3.14112 3.36638 3.54679 3.65836 3.78024 3.84266 4.02566 4.06258 4.11290 4.14864 4.22434 4.30863 4.32238 4.47263 4.50989 4.52721 4.55927 4.59180 4.78189 4.83993 4.87228 4.93215 4.97347 5.01142 5.05150 5.10761 5.12296 5.14799 5.26147 5.46574 5.47199 5.61106 5.65799 5.92393 6.11761 6.19438 6.89620 6.99112 7.70827 8.70970 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.003392 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.474266 B = 8252.435285 C = 9681.066186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.398 6.398 3 C 0.095 3.905 4 H 0.061 0.939 5 C -0.132 4.132 6 C -0.108 4.108 7 C -0.134 4.134 8 C 0.090 3.910 9 H 0.056 0.944 10 O -0.348 6.348 11 C 0.498 3.502 12 O -0.528 6.528 13 C -0.239 4.239 14 C -0.013 4.013 15 C -0.204 4.204 16 C -0.027 4.027 17 C -0.257 4.257 18 C 0.157 3.843 19 O -0.187 6.187 20 C -0.429 4.429 21 H 0.111 0.889 22 C -0.019 4.019 23 N -0.903 5.903 24 Si 1.023 2.977 25 H -0.253 1.253 26 H -0.274 1.274 27 H -0.253 1.253 28 C -0.102 4.102 29 H 0.043 0.957 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.155 0.845 39 H 0.166 0.834 40 H 0.161 0.839 41 H 0.132 0.868 42 H 0.272 0.728 43 H 0.072 0.928 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.369 -15.414 6.313 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.037 3.963 4 H 0.080 0.920 5 C -0.170 4.170 6 C -0.146 4.146 7 C -0.171 4.171 8 C 0.035 3.965 9 H 0.074 0.926 10 O -0.266 6.266 11 C 0.346 3.654 12 O -0.418 6.418 13 C -0.241 4.241 14 C -0.031 4.031 15 C -0.222 4.222 16 C -0.045 4.045 17 C -0.276 4.276 18 C 0.102 3.898 19 O -0.089 6.089 20 C -0.505 4.505 21 H 0.128 0.872 22 C -0.219 4.219 23 N -0.538 5.538 24 Si 0.841 3.159 25 H -0.177 1.177 26 H -0.198 1.198 27 H -0.177 1.177 28 C -0.140 4.140 29 H 0.062 0.938 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.173 0.827 39 H 0.183 0.817 40 H 0.179 0.821 41 H 0.149 0.851 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.934 -15.096 6.486 16.544 hybrid contribution -0.440 1.538 -0.405 1.651 sum -2.374 -13.557 6.081 15.047 Atomic orbital electron populations 1.23008 0.79479 1.04031 1.00771 1.87856 1.21366 1.27293 1.95211 1.21952 0.93380 0.84806 0.96134 0.92045 1.22011 1.02521 0.96258 0.96180 1.21405 0.94406 0.97368 1.01431 1.21954 1.00018 1.01127 0.94048 1.22657 0.82526 0.98589 0.92774 0.92577 1.86523 1.38948 1.37850 1.63310 1.21416 0.86725 0.80725 0.76564 1.90973 1.55207 1.35963 1.59705 1.18501 0.96927 0.96678 1.12015 1.21391 0.92467 0.95031 0.94187 1.21221 0.97872 0.99966 1.03152 1.21535 0.98273 0.90826 0.93853 1.21300 0.96101 1.02240 1.07928 1.19973 0.90577 0.87320 0.91925 1.84145 1.39801 1.16743 1.68234 1.22055 1.07203 0.85454 1.35761 0.87156 1.26780 0.95753 1.02284 0.97090 1.70296 1.14203 1.28665 1.40621 0.84610 0.78263 0.74158 0.78885 1.17691 1.19819 1.17743 1.21492 0.96229 0.94049 1.02209 0.93826 0.87986 0.92796 0.89994 0.89684 0.89017 0.92418 0.89215 0.94078 0.82705 0.81673 0.82131 0.85078 0.91863 0.90936 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.57 16 2 O -0.40 -8.53 10.35 -148.98 -1.54 -10.07 16 3 C 0.10 2.09 2.61 30.59 0.08 2.17 16 4 H 0.06 1.37 7.79 -2.39 -0.02 1.36 16 5 C -0.13 -2.48 5.54 30.59 0.17 -2.31 16 6 C -0.11 -2.44 5.92 30.59 0.18 -2.26 16 7 C -0.13 -3.91 5.56 30.59 0.17 -3.74 16 8 C 0.09 2.97 2.46 30.59 0.08 3.05 16 9 H 0.06 2.19 7.16 -2.39 -0.02 2.17 16 10 O -0.35 -13.40 9.13 -56.76 -0.52 -13.92 16 11 C 0.50 24.06 7.86 70.23 0.55 24.62 16 12 O -0.53 -30.99 14.43 26.79 0.39 -30.60 16 13 C -0.24 -10.90 5.89 -20.00 -0.12 -11.02 16 14 C -0.01 -0.43 9.61 22.53 0.22 -0.21 16 15 C -0.20 -5.71 10.02 22.25 0.22 -5.48 16 16 C -0.03 -0.83 10.03 22.30 0.22 -0.60 16 17 C -0.26 -10.75 9.16 22.36 0.20 -10.55 16 18 C 0.16 8.10 6.66 22.92 0.15 8.25 16 19 O -0.19 -11.73 7.84 1.02 0.01 -11.73 16 20 C -0.43 -25.41 9.49 67.93 0.64 -24.76 16 21 H 0.11 5.79 5.21 -2.91 -0.02 5.77 16 22 C -0.02 -1.12 5.49 84.85 0.47 -0.65 16 23 N -0.90 -57.75 13.67 21.62 0.30 -57.46 16 24 Si 1.02 43.07 29.55 68.60 2.03 45.10 16 25 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 28 C -0.10 -2.63 5.23 30.59 0.16 -2.47 16 29 H 0.04 0.64 8.08 -2.39 -0.02 0.62 16 30 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.05 0.67 7.87 -2.39 -0.02 0.65 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.30 7.87 -2.38 -0.02 1.28 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.16 4.27 7.61 -2.91 -0.02 4.25 16 39 H 0.17 3.09 8.06 -2.91 -0.02 3.06 16 40 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 41 H 0.13 5.45 5.64 -2.91 -0.02 5.43 16 42 H 0.27 15.96 8.31 -92.70 -0.77 15.19 16 43 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -81.50 365.44 6.29 -75.21 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 1.00 Total: 27.86 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 4.63 Total: -24.40 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.30 Total: -57.46 kcal Atomic # 8 Polarization: -64.65 SS G_CDS: -1.67 Total: -66.32 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -81.50 6.29 -75.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194073682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.026 kcal (2) G-P(sol) polarization free energy of solvation -81.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds