Wall clock time and date at job start Tue Mar 31 2020 12:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00168 * 2 1 4 4 H 1.09003 * 110.05153 * 28.57956 * 3 2 1 5 5 C 1.54269 * 110.03264 * 267.16891 * 3 2 1 6 6 C 1.54890 * 104.19271 * 217.10535 * 5 3 2 7 7 C 1.54889 * 102.75191 * 37.93908 * 6 5 3 8 8 H 1.09000 * 110.48674 * 80.73551 * 7 6 5 9 9 O 1.45201 * 110.59943 * 203.32495 * 7 6 5 10 10 C 1.34226 * 116.99786 * 264.84139 * 9 7 6 11 11 O 1.20823 * 120.00119 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00048 * 179.97438 * 10 9 7 13 13 C 1.50690 * 109.47545 * 179.97438 * 12 10 9 14 14 C 1.38302 * 119.93480 * 269.72930 * 13 12 10 15 15 C 1.38099 * 120.07426 * 179.72213 * 14 13 12 16 16 C 1.38883 * 119.92670 * 0.54694 * 15 14 13 17 17 O 1.35749 * 120.06656 * 179.74647 * 16 15 14 18 18 C 1.34829 * 116.99824 * 174.44372 * 17 16 15 19 19 H 1.08002 * 119.99997 * 5.05611 * 18 17 16 20 20 C 1.38650 * 119.99918 * 185.05981 * 18 17 16 21 21 N 1.31560 * 120.00312 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99927 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47056 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99807 * 22 20 18 25 25 H 1.48501 * 109.46914 * 239.99843 * 22 20 18 26 26 C 1.38877 * 119.86345 * 359.72774 * 16 15 14 27 27 C 1.38100 * 119.93039 * 359.97438 * 26 16 15 28 28 C 1.53878 * 110.03305 * 149.99893 * 3 2 1 29 29 H 1.08997 * 109.46764 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47016 * 300.00073 * 1 2 3 31 31 H 1.09001 * 109.46839 * 60.00512 * 1 2 3 32 32 H 1.09008 * 110.48433 * 335.77931 * 5 3 2 33 33 H 1.08997 * 110.48703 * 98.42225 * 5 3 2 34 34 H 1.09004 * 110.75659 * 279.62397 * 6 5 3 35 35 H 1.09001 * 110.91353 * 156.32925 * 6 5 3 36 36 H 1.08996 * 109.47201 * 300.00413 * 12 10 9 37 37 H 1.09007 * 109.46790 * 59.99564 * 12 10 9 38 38 H 1.08009 * 119.96151 * 0.02562 * 14 13 12 39 39 H 1.08001 * 120.03764 * 180.27221 * 15 14 13 40 40 H 0.96996 * 120.00177 * 180.02562 * 21 20 18 41 41 H 1.07998 * 120.03706 * 180.02562 * 26 16 15 42 42 H 1.07997 * 119.97051 * 180.02562 * 27 26 16 43 43 H 1.08998 * 110.02942 * 238.56743 * 28 3 2 44 44 H 1.08999 * 110.02962 * 359.94956 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3409 2.0126 0.4898 5 6 2.2906 1.7591 -1.4476 6 6 3.6254 2.5388 -1.3495 7 6 4.4267 1.7155 -0.3107 8 1 4.8817 0.8448 -0.7829 9 8 5.4427 2.5391 0.3200 10 6 6.6781 2.4895 -0.2025 11 8 6.9032 1.7810 -1.1550 12 6 7.7844 3.3174 0.3989 13 6 9.0610 3.0817 -0.3662 14 6 9.9237 2.0738 0.0245 15 6 11.0917 1.8515 -0.6780 16 6 11.4052 2.6488 -1.7711 17 8 12.5550 2.4362 -2.4606 18 6 12.7432 3.1677 -3.5775 19 1 12.0367 3.9404 -3.8423 20 6 13.8438 2.9279 -4.3859 21 7 14.7047 1.9870 -4.0631 22 14 14.1050 3.9419 -5.9330 23 1 13.0036 4.9286 -6.0699 24 1 15.4029 4.6577 -5.8424 25 1 14.1157 3.0452 -7.1166 26 6 10.5397 3.6638 -2.1576 27 6 9.3702 3.8771 -1.4547 28 6 3.3684 1.2777 0.7229 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.4007 0.8954 -2.1035 33 1 1.4932 2.4110 -1.8043 34 1 3.4545 3.5534 -0.9895 35 1 4.1393 2.5530 -2.3106 36 1 7.5182 4.3730 0.3458 37 1 7.9274 3.0308 1.4408 38 1 9.6812 1.4566 0.8771 39 1 11.7628 1.0614 -0.3751 40 1 15.4749 1.8195 -4.6285 41 1 10.7805 4.2853 -3.0074 42 1 8.6965 4.6659 -1.7549 43 1 3.3581 1.9715 1.5635 44 1 3.5837 0.2687 1.0744 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282684558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:52 Heat of formation + Delta-G solvation = -142.310217 kcal Electronic energy + Delta-G solvation = -25789.419265 eV Core-core repulsion = 21865.465276 eV Total energy + Delta-G solvation = -3923.953989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.61077 -39.27180 -38.84433 -37.09238 -36.32163 -35.13228 -32.50426 -31.48705 -30.16807 -29.23735 -28.31015 -26.81723 -26.27250 -25.15343 -22.18670 -21.97493 -21.07186 -20.61789 -20.13664 -17.99516 -17.85608 -17.06849 -16.99726 -16.68042 -15.98937 -15.56595 -15.33732 -14.71005 -14.59332 -14.39814 -14.19260 -14.03880 -13.61966 -13.46719 -13.39731 -12.84512 -12.71354 -12.62128 -12.43999 -12.30743 -11.89918 -11.80640 -11.71886 -11.52905 -11.28341 -11.08582 -10.95741 -10.86678 -10.77676 -10.61191 -10.50492 -10.41910 -10.23512 -9.95133 -9.32857 -8.83173 -8.16659 -7.19549 -6.44892 -4.03408 2.12695 2.24284 2.40480 2.83479 3.13164 3.14813 3.20074 3.37077 3.97098 4.10352 4.15713 4.49576 4.68491 4.78002 4.86481 4.88550 4.95861 5.03946 5.04843 5.08100 5.14063 5.19164 5.23225 5.31062 5.31540 5.37477 5.51899 5.55785 5.63291 5.68958 5.71762 5.79997 5.83603 5.87055 6.21065 6.40668 6.55354 6.70352 6.80918 6.90425 7.05098 7.22668 7.34663 7.44203 7.81793 7.96072 8.00366 9.00787 9.70596 10.73121 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.024037 B = 0.002108 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.605416 B =13279.623299 C =13764.628050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.087 3.913 4 H 0.070 0.930 5 C -0.144 4.144 6 C -0.137 4.137 7 C 0.083 3.917 8 H 0.095 0.905 9 O -0.357 6.357 10 C 0.454 3.546 11 O -0.489 6.489 12 C -0.050 4.050 13 C -0.183 4.183 14 C -0.057 4.057 15 C -0.192 4.192 16 C 0.159 3.841 17 O -0.176 6.176 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.942 3.058 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.233 4.233 27 C -0.053 4.053 28 C -0.120 4.120 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.270 0.730 41 H 0.128 0.872 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.577 1.992 9.539 27.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.029 3.971 4 H 0.088 0.912 5 C -0.182 4.182 6 C -0.175 4.175 7 C 0.028 3.972 8 H 0.113 0.887 9 O -0.275 6.275 10 C 0.296 3.704 11 O -0.374 6.374 12 C -0.088 4.088 13 C -0.184 4.184 14 C -0.075 4.075 15 C -0.211 4.211 16 C 0.105 3.895 17 O -0.079 6.079 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.252 4.252 27 C -0.072 4.072 28 C -0.158 4.158 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.080 0.920 41 H 0.145 0.855 42 H 0.123 0.877 43 H 0.107 0.893 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -25.004 1.336 9.171 26.666 hybrid contribution -0.182 0.646 -0.991 1.197 sum -25.185 1.982 8.180 26.554 Atomic orbital electron populations 1.22790 0.81065 1.02840 0.99948 1.87971 1.19677 1.27587 1.94956 1.22719 0.94335 0.84620 0.95437 0.91151 1.22833 0.97336 1.00734 0.97282 1.22835 0.95416 0.99559 0.99710 1.23503 0.86491 0.93964 0.93276 0.88711 1.86558 1.19595 1.63437 1.57908 1.24227 0.82686 0.81315 0.82205 1.90698 1.82460 1.38088 1.26187 1.20098 0.88842 0.99640 1.00178 1.18639 0.96228 1.02415 1.01103 1.20430 0.93304 0.95674 0.98101 1.20165 0.99474 1.02977 0.98464 1.19401 0.86307 0.92290 0.91505 1.83977 1.31076 1.57702 1.35190 1.21391 1.10433 1.15895 0.99008 0.88959 1.25305 0.95139 0.97133 0.98994 1.70049 1.12142 1.29656 1.37799 0.85638 0.78712 0.79000 0.80020 1.19087 1.20131 1.20127 1.21110 0.97095 1.02685 1.04356 1.20530 0.95598 0.97455 0.93580 1.22264 0.91952 1.03436 0.98106 0.89603 0.93998 0.94003 0.89936 0.90836 0.90144 0.90296 0.87866 0.87809 0.87180 0.86398 0.92048 0.85463 0.87660 0.89290 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.85 101.05 1.10 1.27 16 2 O -0.38 -3.48 10.26 -35.23 -0.36 -3.84 16 3 C 0.09 0.69 3.38 -25.61 -0.09 0.60 16 4 H 0.07 0.44 7.81 -51.93 -0.41 0.03 16 5 C -0.14 -1.14 6.56 -25.07 -0.16 -1.31 16 6 C -0.14 -1.31 6.63 -24.74 -0.16 -1.47 16 7 C 0.08 0.92 3.22 -25.07 -0.08 0.84 16 8 H 0.09 1.23 7.14 -51.93 -0.37 0.86 16 9 O -0.36 -4.41 9.95 -39.25 -0.39 -4.80 16 10 C 0.45 6.61 7.95 36.01 0.29 6.89 16 11 O -0.49 -9.03 15.24 -18.75 -0.29 -9.32 16 12 C -0.05 -0.65 5.94 -29.04 -0.17 -0.82 16 13 C -0.18 -3.17 4.38 -104.58 -0.46 -3.62 16 14 C -0.06 -1.04 9.69 -39.61 -0.38 -1.43 16 15 C -0.19 -4.16 9.99 -39.39 -0.39 -4.56 16 16 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 17 O -0.18 -5.11 9.76 0.05 0.00 -5.11 16 18 C -0.39 -11.07 9.49 30.88 0.29 -10.78 16 19 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.50 13.67 55.48 0.76 -24.75 16 22 Si 0.94 20.75 29.55 -169.99 -5.02 15.72 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 C -0.23 -5.19 9.17 -39.40 -0.36 -5.55 16 27 C -0.05 -1.00 9.69 -39.61 -0.38 -1.39 16 28 C -0.12 -1.06 6.38 -25.61 -0.16 -1.22 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.20 8.10 -51.93 -0.42 -0.22 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.72 8.08 -51.92 -0.42 0.30 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 37 H 0.10 1.08 8.08 -51.92 -0.42 0.66 16 38 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 43 H 0.09 0.69 8.07 -51.93 -0.42 0.27 16 44 H 0.09 0.81 7.95 -51.93 -0.41 0.40 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -33.48 372.57 -7.55 -41.03 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.37 Total: 3.35 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -1.49 Total: -17.90 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.76 Total: -24.75 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -1.04 Total: -23.07 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.48 -7.55 -41.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282684558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.278 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds