Wall clock time and date at job start Tue Mar 31 2020 12:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00168 * 2 1 4 4 H 1.09003 * 110.05153 * 28.57956 * 3 2 1 5 5 C 1.54269 * 110.03264 * 267.16891 * 3 2 1 6 6 C 1.54890 * 104.19271 * 217.10535 * 5 3 2 7 7 C 1.54889 * 102.75191 * 37.93908 * 6 5 3 8 8 H 1.09000 * 110.48674 * 80.73551 * 7 6 5 9 9 O 1.45201 * 110.59943 * 203.32495 * 7 6 5 10 10 C 1.34226 * 116.99786 * 264.84139 * 9 7 6 11 11 O 1.20823 * 120.00119 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00048 * 179.97438 * 10 9 7 13 13 C 1.50690 * 109.47545 * 179.97438 * 12 10 9 14 14 C 1.38302 * 119.93480 * 269.72930 * 13 12 10 15 15 C 1.38099 * 120.07426 * 179.72213 * 14 13 12 16 16 C 1.38883 * 119.92670 * 0.54694 * 15 14 13 17 17 O 1.35749 * 120.06656 * 179.74647 * 16 15 14 18 18 C 1.34829 * 116.99824 * 174.44372 * 17 16 15 19 19 H 1.08002 * 119.99997 * 5.05611 * 18 17 16 20 20 C 1.38650 * 119.99918 * 185.05981 * 18 17 16 21 21 N 1.31560 * 120.00312 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99927 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47056 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99807 * 22 20 18 25 25 H 1.48501 * 109.46914 * 239.99843 * 22 20 18 26 26 C 1.38877 * 119.86345 * 359.72774 * 16 15 14 27 27 C 1.38100 * 119.93039 * 359.97438 * 26 16 15 28 28 C 1.53878 * 110.03305 * 149.99893 * 3 2 1 29 29 H 1.08997 * 109.46764 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47016 * 300.00073 * 1 2 3 31 31 H 1.09001 * 109.46839 * 60.00512 * 1 2 3 32 32 H 1.09008 * 110.48433 * 335.77931 * 5 3 2 33 33 H 1.08997 * 110.48703 * 98.42225 * 5 3 2 34 34 H 1.09004 * 110.75659 * 279.62397 * 6 5 3 35 35 H 1.09001 * 110.91353 * 156.32925 * 6 5 3 36 36 H 1.08996 * 109.47201 * 300.00413 * 12 10 9 37 37 H 1.09007 * 109.46790 * 59.99564 * 12 10 9 38 38 H 1.08009 * 119.96151 * 0.02562 * 14 13 12 39 39 H 1.08001 * 120.03764 * 180.27221 * 15 14 13 40 40 H 0.96996 * 120.00177 * 180.02562 * 21 20 18 41 41 H 1.07998 * 120.03706 * 180.02562 * 26 16 15 42 42 H 1.07997 * 119.97051 * 180.02562 * 27 26 16 43 43 H 1.08998 * 110.02942 * 238.56743 * 28 3 2 44 44 H 1.08999 * 110.02962 * 359.94956 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3409 2.0126 0.4898 5 6 2.2906 1.7591 -1.4476 6 6 3.6254 2.5388 -1.3495 7 6 4.4267 1.7155 -0.3107 8 1 4.8817 0.8448 -0.7829 9 8 5.4427 2.5391 0.3200 10 6 6.6781 2.4895 -0.2025 11 8 6.9032 1.7810 -1.1550 12 6 7.7844 3.3174 0.3989 13 6 9.0610 3.0817 -0.3662 14 6 9.9237 2.0738 0.0245 15 6 11.0917 1.8515 -0.6780 16 6 11.4052 2.6488 -1.7711 17 8 12.5550 2.4362 -2.4606 18 6 12.7432 3.1677 -3.5775 19 1 12.0367 3.9404 -3.8423 20 6 13.8438 2.9279 -4.3859 21 7 14.7047 1.9870 -4.0631 22 14 14.1050 3.9419 -5.9330 23 1 13.0036 4.9286 -6.0699 24 1 15.4029 4.6577 -5.8424 25 1 14.1157 3.0452 -7.1166 26 6 10.5397 3.6638 -2.1576 27 6 9.3702 3.8771 -1.4547 28 6 3.3684 1.2777 0.7229 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.4007 0.8954 -2.1035 33 1 1.4932 2.4110 -1.8043 34 1 3.4545 3.5534 -0.9895 35 1 4.1393 2.5530 -2.3106 36 1 7.5182 4.3730 0.3458 37 1 7.9274 3.0308 1.4408 38 1 9.6812 1.4566 0.8771 39 1 11.7628 1.0614 -0.3751 40 1 15.4749 1.8195 -4.6285 41 1 10.7805 4.2853 -3.0074 42 1 8.6965 4.6659 -1.7549 43 1 3.3581 1.9715 1.5635 44 1 3.5837 0.2687 1.0744 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282684558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:52 Heat of formation + Delta-G solvation = -162.527436 kcal Electronic energy + Delta-G solvation = -25790.295950 eV Core-core repulsion = 21865.465276 eV Total energy + Delta-G solvation = -3924.830674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.70413 -40.74218 -39.84118 -38.48868 -37.59896 -35.98001 -34.42494 -32.99985 -31.80995 -29.92461 -29.19779 -28.13689 -27.12166 -26.79979 -23.67021 -23.40037 -21.96446 -21.54119 -21.31744 -19.86866 -18.90774 -18.85341 -17.72224 -17.59216 -17.14837 -16.54717 -16.38883 -16.14206 -15.97942 -15.83180 -15.52733 -15.15549 -14.89975 -14.76983 -14.56938 -14.34071 -14.06092 -13.66582 -13.49095 -13.33942 -13.08722 -12.97477 -12.82998 -12.53108 -12.45140 -12.33991 -12.30877 -12.28151 -12.10665 -11.84028 -11.56066 -11.52441 -11.33985 -11.19576 -10.81196 -10.54080 -9.79309 -8.96105 -8.48842 -6.17130 0.57393 0.59198 1.27779 1.33643 1.41601 1.52417 1.75927 2.16477 2.80255 2.84571 3.14749 3.40935 3.45279 3.49544 3.73429 3.91780 4.02057 4.03668 4.16660 4.17643 4.28115 4.37418 4.43400 4.44634 4.50005 4.56414 4.59792 4.63313 4.68625 4.77955 4.79264 4.90285 4.90855 4.94208 5.04907 5.08846 5.13108 5.15069 5.27364 5.52728 5.56895 5.69425 5.72416 6.01342 6.19741 6.28940 6.84648 6.95730 7.76213 8.74661 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.024037 B = 0.002108 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.605416 B =13279.623299 C =13764.628050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.088 3.912 4 H 0.095 0.905 5 C -0.139 4.139 6 C -0.134 4.134 7 C 0.074 3.926 8 H 0.067 0.933 9 O -0.345 6.345 10 C 0.460 3.540 11 O -0.538 6.538 12 C -0.048 4.048 13 C -0.158 4.158 14 C -0.054 4.054 15 C -0.207 4.207 16 C 0.116 3.884 17 O -0.232 6.232 18 C -0.414 4.414 19 H 0.102 0.898 20 C -0.025 4.025 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.251 1.251 24 H -0.266 1.266 25 H -0.269 1.269 26 C -0.245 4.245 27 C -0.055 4.055 28 C -0.115 4.115 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.149 0.851 39 H 0.114 0.886 40 H 0.273 0.727 41 H 0.119 0.881 42 H 0.142 0.858 43 H 0.106 0.894 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.351 4.050 11.084 31.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.030 3.970 4 H 0.113 0.887 5 C -0.177 4.177 6 C -0.172 4.172 7 C 0.019 3.981 8 H 0.086 0.914 9 O -0.262 6.262 10 C 0.304 3.696 11 O -0.427 6.427 12 C -0.085 4.085 13 C -0.159 4.159 14 C -0.072 4.072 15 C -0.226 4.226 16 C 0.065 3.935 17 O -0.139 6.139 18 C -0.490 4.490 19 H 0.119 0.881 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.839 3.161 23 H -0.175 1.175 24 H -0.190 1.190 25 H -0.194 1.194 26 C -0.264 4.264 27 C -0.073 4.073 28 C -0.152 4.152 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.160 0.840 43 H 0.124 0.876 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -28.850 3.412 10.773 30.984 hybrid contribution 0.638 -0.035 -1.201 1.360 sum -28.212 3.377 9.573 29.982 Atomic orbital electron populations 1.22972 0.79501 1.03703 1.01055 1.87940 1.21513 1.28336 1.95077 1.22770 0.94180 0.84855 0.95170 0.88694 1.22815 0.97095 1.00369 0.97446 1.22818 0.95715 1.00343 0.98318 1.23674 0.86550 0.93283 0.94546 0.91432 1.86538 1.19014 1.63225 1.57445 1.24423 0.83505 0.80387 0.81260 1.90715 1.83249 1.40291 1.28425 1.20246 0.85584 1.01675 1.00988 1.19203 0.97278 0.99826 0.99574 1.20914 0.91739 0.96039 0.98497 1.20449 1.00987 1.02837 0.98336 1.19968 0.86550 0.94276 0.92669 1.83941 1.33713 1.59669 1.36540 1.21874 1.11145 1.16419 0.99551 0.88111 1.26629 0.94475 0.98473 1.02611 1.70192 1.13354 1.32411 1.39916 0.84511 0.79230 0.77405 0.74918 1.17469 1.19047 1.19449 1.21236 0.98196 1.02164 1.04800 1.20966 0.94568 0.98476 0.93317 1.22262 0.91722 1.03270 0.97979 0.89038 0.92582 0.93129 0.91416 0.88671 0.88561 0.92039 0.84125 0.84019 0.83300 0.86826 0.91806 0.86305 0.84037 0.87605 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.85 113.37 1.23 1.45 16 2 O -0.41 -6.65 10.26 -148.98 -1.53 -8.18 16 3 C 0.09 1.15 3.38 31.32 0.11 1.26 16 4 H 0.10 0.80 7.81 -2.39 -0.02 0.78 16 5 C -0.14 -1.92 6.56 31.67 0.21 -1.71 16 6 C -0.13 -2.29 6.63 31.89 0.21 -2.07 16 7 C 0.07 1.52 3.22 31.67 0.10 1.63 16 8 H 0.07 1.77 7.14 -2.39 -0.02 1.75 16 9 O -0.35 -7.38 9.95 -51.38 -0.51 -7.89 16 10 C 0.46 11.89 7.95 71.24 0.57 12.45 16 11 O -0.54 -19.11 15.24 21.97 0.33 -18.77 16 12 C -0.05 -0.99 5.94 29.10 0.17 -0.82 16 13 C -0.16 -4.96 4.38 -19.84 -0.09 -5.04 16 14 C -0.05 -1.87 9.69 22.25 0.22 -1.66 16 15 C -0.21 -9.21 9.99 22.39 0.22 -8.98 16 16 C 0.12 6.01 6.65 22.58 0.15 6.16 16 17 O -0.23 -14.44 9.76 -22.72 -0.22 -14.66 16 18 C -0.41 -24.80 9.49 67.92 0.64 -24.15 16 19 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 20 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 21 N -0.92 -57.70 13.67 21.61 0.30 -57.40 16 22 Si 1.02 43.87 29.55 68.60 2.03 45.89 16 23 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 C -0.24 -11.09 9.17 22.39 0.21 -10.88 16 27 C -0.06 -1.96 9.69 22.25 0.22 -1.74 16 28 C -0.11 -1.75 6.38 31.32 0.20 -1.55 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.36 8.10 -2.39 -0.02 0.34 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.07 1.13 8.08 -2.38 -0.02 1.11 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.14 2.01 8.08 -2.39 -0.02 1.99 16 37 H 0.14 2.00 8.08 -2.38 -0.02 1.99 16 38 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 39 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 40 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.12 5.46 5.64 -2.91 -0.02 5.44 16 42 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 43 H 0.11 1.26 8.07 -2.39 -0.02 1.24 16 44 H 0.08 1.35 7.95 -2.39 -0.02 1.33 16 Total: -1.00 -80.06 372.57 6.23 -73.83 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 1.00 Total: 23.82 kcal Atomic # 6 Polarization: -41.46 SS G_CDS: 4.83 Total: -36.63 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.30 Total: -57.40 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -1.93 Total: -49.51 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -80.06 6.23 -73.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282684558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.697 kcal (2) G-P(sol) polarization free energy of solvation -80.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds