Wall clock time and date at job start Tue Mar 31 2020 12:43:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81395 * 1
3 3 C 1.76200 * 103.00100 * 2 1
4 4 C 1.38773 * 120.10355 * 0.02562 * 3 2 1
5 5 C 1.38203 * 119.99175 * 179.97438 * 4 3 2
6 6 C 1.38290 * 120.19654 * 359.97438 * 5 4 3
7 7 C 1.38267 * 120.20502 * 0.02562 * 6 5 4
8 8 C 1.38634 * 120.00706 * 359.74273 * 7 6 5
9 9 N 1.40200 * 120.09556 * 180.25228 * 8 7 6
10 10 C 1.34777 * 119.99858 * 329.05546 * 9 8 7
11 11 O 1.21592 * 120.00376 * 4.26090 * 10 9 8
12 12 N 1.34773 * 119.99815 * 184.26628 * 10 9 8
13 13 C 1.46927 * 120.63264 * 4.36791 * 12 10 9
14 14 C 1.52757 * 109.01326 * 233.59142 * 13 12 10
15 15 C 1.53042 * 109.38157 * 305.58736 * 14 13 12
16 16 C 1.50704 * 109.45029 * 181.25296 * 15 14 13
17 17 H 1.07997 * 119.99958 * 245.50283 * 16 15 14
18 18 C 1.37875 * 119.99657 * 65.50169 * 16 15 14
19 19 N 1.31506 * 120.00400 * 9.72687 * 18 16 15
20 20 Si 1.86804 * 119.99710 * 189.72369 * 18 16 15
21 21 H 1.48498 * 109.46790 * 94.99397 * 20 18 16
22 22 H 1.48494 * 109.47077 * 214.99480 * 20 18 16
23 23 H 1.48503 * 109.46969 * 334.99365 * 20 18 16
24 24 C 1.53045 * 109.53987 * 61.23813 * 15 14 13
25 25 C 1.46927 * 120.63221 * 184.65564 * 12 10 9
26 26 H 1.08998 * 109.47329 * 180.02562 * 1 2 3
27 27 H 1.09000 * 109.46876 * 300.00274 * 1 2 3
28 28 H 1.08994 * 109.47555 * 59.99839 * 1 2 3
29 29 H 1.08002 * 120.00535 * 359.95450 * 4 3 2
30 30 H 1.07999 * 119.90621 * 179.97438 * 5 4 3
31 31 H 1.08000 * 119.89836 * 179.97438 * 6 5 4
32 32 H 1.08002 * 119.99569 * 180.02562 * 7 6 5
33 33 H 0.96993 * 119.99719 * 149.05839 * 9 8 7
34 34 H 1.09005 * 109.58577 * 353.42830 * 13 12 10
35 35 H 1.09000 * 109.58622 * 113.84399 * 13 12 10
36 36 H 1.08995 * 109.57060 * 185.55315 * 14 13 12
37 37 H 1.08996 * 109.38937 * 65.51098 * 14 13 12
38 38 H 1.09005 * 109.46249 * 301.22060 * 15 14 13
39 39 H 0.96999 * 120.00475 * 179.97438 * 19 18 16
40 40 H 1.08993 * 109.50007 * 178.68316 * 24 15 14
41 41 H 1.09009 * 109.52165 * 58.59960 * 24 15 14
42 42 H 1.08999 * 109.58532 * 246.14963 * 25 12 10
43 43 H 1.09005 * 109.58370 * 6.43298 * 25 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 6 2.2103 1.7168 0.0000
4 6 1.1971 2.6651 0.0005
5 6 1.5107 4.0111 0.0011
6 6 2.8326 4.4174 0.0016
7 6 3.8485 3.4795 0.0011
8 6 3.5437 2.1271 0.0054
9 7 4.5723 1.1745 0.0102
10 6 5.7478 1.4491 -0.5893
11 8 5.9444 2.5501 -1.0665
12 7 6.7053 0.5033 -0.6599
13 6 6.4489 -0.8593 -0.1739
14 6 7.5376 -1.2442 0.8261
15 6 8.9115 -1.0555 0.1788
16 6 9.9859 -1.4639 1.1536
17 1 10.6739 -0.7262 1.5392
18 6 10.0903 -2.7794 1.5530
19 7 9.3849 -3.7088 0.9463
20 14 11.2339 -3.2416 2.9559
21 1 10.4659 -3.2869 4.2260
22 1 11.8298 -4.5754 2.6898
23 1 12.3151 -2.2296 3.0669
24 6 9.1005 0.4148 -0.2017
25 6 8.0276 0.8169 -1.2185
26 1 -0.3634 -1.0276 0.0005
27 1 -0.3633 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 0.1637 2.3513 0.0002
30 1 0.7211 4.7479 0.0011
31 1 3.0721 5.4705 0.0016
32 1 4.8797 3.8005 0.0019
33 1 4.4380 0.3180 0.4449
34 1 5.4756 -0.8956 0.3156
35 1 6.4644 -1.5553 -1.0127
36 1 7.4132 -2.2869 1.1180
37 1 7.4604 -0.6079 1.7077
38 1 8.9793 -1.6738 -0.7164
39 1 9.4587 -4.6344 1.2270
40 1 10.0883 0.5528 -0.6413
41 1 9.0086 1.0363 0.6891
42 1 8.1745 0.2604 -2.1441
43 1 8.0948 1.8860 -1.4203
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000334459877.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:43:05
Heat of formation + Delta-G solvation = 1.670884 kcal
Electronic energy + Delta-G solvation = -24611.153230 eV
Core-core repulsion = 21168.488352 eV
Total energy + Delta-G solvation = -3442.664878 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-40.66315 -38.85653 -36.97694 -34.76186 -33.53435 -31.44325 -31.31918 -30.25724
-29.26080 -29.05210 -26.16476 -23.56359 -23.05399 -22.61862 -22.02238 -20.24121
-19.06134 -18.37048 -17.43249 -17.00350 -16.30281 -15.63764 -15.41864 -15.21444
-14.59662 -14.42830 -14.22640 -14.11292 -13.93233 -13.72693 -13.32200 -13.06305
-12.81806 -12.71647 -12.64527 -12.39892 -12.16775 -11.63567 -11.48373 -11.39342
-10.94804 -10.68276 -10.54411 -10.42753 -10.33377 -10.25190 -9.85001 -9.71277
-9.57892 -9.12539 -9.04598 -8.43597 -8.37642 -8.03128 -7.40657 -6.07993
-4.09459 1.10989 1.29188 1.31641 2.20968 2.79691 3.27128 3.28322
3.35276 3.38449 3.74869 4.01955 4.40340 4.70220 4.76518 4.77391
4.94709 5.14776 5.22215 5.29862 5.37923 5.40865 5.51577 5.65374
5.78720 5.86763 5.99816 6.12007 6.12637 6.15054 6.18430 6.39534
6.42218 6.53017 6.58991 6.77363 6.92514 6.98125 7.03029 7.07696
7.29160 7.61077 7.85611 7.93042 8.07511 8.37168 8.70583 8.94194
9.54550 11.00674
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.018338 B = 0.003194 C = 0.002892
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1526.549623 B = 8765.014519 C = 9680.622360
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 S -0.120 6.120
3 C -0.123 4.123
4 C -0.115 4.115
5 C -0.128 4.128
6 C -0.103 4.103
7 C -0.111 4.111
8 C 0.197 3.803
9 N -0.684 5.684
10 C 0.707 3.293
11 O -0.586 6.586
12 N -0.610 5.610
13 C 0.108 3.892
14 C -0.118 4.118
15 C 0.048 3.952
16 C -0.515 4.515
17 H 0.055 0.945
18 C 0.064 3.936
19 N -0.888 5.888
20 Si 0.886 3.114
21 H -0.281 1.281
22 H -0.287 1.287
23 H -0.274 1.274
24 C -0.124 4.124
25 C 0.128 3.872
26 H 0.108 0.892
27 H 0.083 0.917
28 H 0.083 0.917
29 H 0.124 0.876
30 H 0.123 0.877
31 H 0.126 0.874
32 H 0.154 0.846
33 H 0.409 0.591
34 H 0.056 0.944
35 H 0.069 0.931
36 H 0.087 0.913
37 H 0.042 0.958
38 H 0.036 0.964
39 H 0.260 0.740
40 H 0.064 0.936
41 H 0.051 0.949
42 H 0.062 0.938
43 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.286 9.392 -2.000 20.654
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.310 4.310
2 S 0.121 5.879
3 C -0.239 4.239
4 C -0.139 4.139
5 C -0.149 4.149
6 C -0.124 4.124
7 C -0.133 4.133
8 C 0.095 3.905
9 N -0.334 5.334
10 C 0.409 3.591
11 O -0.465 6.465
12 N -0.345 5.345
13 C -0.015 4.015
14 C -0.157 4.157
15 C 0.029 3.971
16 C -0.553 4.553
17 H 0.073 0.927
18 C -0.137 4.137
19 N -0.526 5.526
20 Si 0.714 3.286
21 H -0.207 1.207
22 H -0.213 1.213
23 H -0.199 1.199
24 C -0.162 4.162
25 C 0.006 3.994
26 H 0.126 0.874
27 H 0.102 0.898
28 H 0.102 0.898
29 H 0.142 0.858
30 H 0.141 0.859
31 H 0.144 0.856
32 H 0.171 0.829
33 H 0.249 0.751
34 H 0.074 0.926
35 H 0.087 0.913
36 H 0.105 0.895
37 H 0.061 0.939
38 H 0.054 0.946
39 H 0.070 0.930
40 H 0.082 0.918
41 H 0.070 0.930
42 H 0.080 0.920
43 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -17.417 8.826 -2.376 19.669
hybrid contribution -0.417 0.143 1.093 1.178
sum -17.834 8.969 -1.283 20.003
Atomic orbital electron populations
1.23648 0.94696 1.07067 1.05545 1.85480 1.06594 1.02830 1.93045
1.21440 0.94761 0.97056 1.10607 1.20879 0.97430 0.92934 1.02665
1.20963 0.96664 0.95037 1.02202 1.21127 0.92295 0.99566 0.99450
1.21518 1.01755 0.90447 0.99580 1.17074 0.84861 0.89162 0.99371
1.42962 1.12871 1.19319 1.58231 1.15777 0.79880 0.84476 0.78935
1.90824 1.79912 1.22068 1.53695 1.47451 1.12877 1.10344 1.63855
1.21856 0.98900 0.81832 0.98872 1.21892 0.95384 1.02308 0.96131
1.18638 0.92052 0.89764 0.96621 1.21161 1.14699 0.93530 1.25938
0.92658 1.24950 0.95839 0.96480 0.96463 1.69944 1.41973 1.00829
1.39904 0.86671 0.81077 0.77834 0.82992 1.20742 1.21324 1.19902
1.22037 0.96427 1.00317 0.97453 1.21670 0.80210 1.01116 0.96391
0.87386 0.89787 0.89764 0.85828 0.85925 0.85582 0.82857 0.75105
0.92567 0.91301 0.89510 0.93927 0.94597 0.92989 0.91782 0.92992
0.92012 0.90083
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.99 9.15 101.05 0.92 -0.07 16
2 S -0.12 -1.35 21.38 -107.50 -2.30 -3.65 16
3 C -0.12 -1.57 6.12 -38.91 -0.24 -1.81 16
4 C -0.12 -1.22 9.36 -39.40 -0.37 -1.59 16
5 C -0.13 -1.30 10.04 -39.58 -0.40 -1.69 16
6 C -0.10 -1.19 10.04 -39.55 -0.40 -1.59 16
7 C -0.11 -1.61 8.73 -39.42 -0.34 -1.96 16
8 C 0.20 2.94 6.38 -83.41 -0.53 2.41 16
9 N -0.68 -10.77 4.99 -14.06 -0.07 -10.84 16
10 C 0.71 12.79 8.17 -86.92 -0.71 12.08 16
11 O -0.59 -11.70 12.97 5.28 0.07 -11.63 16
12 N -0.61 -10.99 2.98 -178.76 -0.53 -11.52 16
13 C 0.11 1.90 6.41 -3.93 -0.03 1.88 16
14 C -0.12 -2.52 5.20 -26.83 -0.14 -2.66 16
15 C 0.05 1.11 1.93 -91.72 -0.18 0.93 16
16 C -0.52 -13.55 8.48 -34.44 -0.29 -13.84 16
17 H 0.06 1.46 7.77 -52.49 -0.41 1.05 16
18 C 0.06 1.72 5.19 -17.82 -0.09 1.62 16
19 N -0.89 -24.32 12.17 55.43 0.67 -23.65 16
20 Si 0.89 20.71 29.55 -169.99 -5.02 15.68 16
21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
22 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16
23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
24 C -0.12 -2.48 5.30 -26.61 -0.14 -2.63 16
25 C 0.13 2.32 6.42 -3.71 -0.02 2.29 16
26 H 0.11 0.61 8.14 -51.92 -0.42 0.19 16
27 H 0.08 0.51 7.75 -51.92 -0.40 0.11 16
28 H 0.08 0.53 7.75 -51.93 -0.40 0.13 16
29 H 0.12 0.99 5.88 -52.49 -0.31 0.68 16
30 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16
31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16
32 H 0.15 2.49 5.91 -52.49 -0.31 2.18 16
33 H 0.41 5.98 5.32 -40.82 -0.22 5.76 16
34 H 0.06 0.86 5.57 -51.93 -0.29 0.57 16
35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16
36 H 0.09 2.04 6.89 -51.93 -0.36 1.68 16
37 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16
38 H 0.04 0.91 8.08 -51.93 -0.42 0.50 16
39 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16
40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
41 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16
42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
43 H 0.08 1.44 7.03 -51.93 -0.37 1.08 16
LS Contribution 353.49 15.07 5.33 5.33
Total: -1.00 -29.47 353.49 -10.80 -40.27
By element:
Atomic # 1 Polarization: 12.60 SS G_CDS: -6.00 Total: 6.61 kcal
Atomic # 6 Polarization: -3.66 SS G_CDS: -2.95 Total: -6.61 kcal
Atomic # 7 Polarization: -46.07 SS G_CDS: 0.07 Total: -46.00 kcal
Atomic # 8 Polarization: -11.70 SS G_CDS: 0.07 Total: -11.63 kcal
Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal
Atomic # 16 Polarization: -1.35 SS G_CDS: -2.30 Total: -3.65 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -29.47 -10.80 -40.27 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000334459877.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.942 kcal
(2) G-P(sol) polarization free energy of solvation -29.466 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.475 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.271 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.671 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds