Wall clock time and date at job start Tue Mar 31 2020 12:43:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81395 * 1
3 3 C 1.76200 * 103.00100 * 2 1
4 4 C 1.38773 * 120.10355 * 0.02562 * 3 2 1
5 5 C 1.38203 * 119.99175 * 179.97438 * 4 3 2
6 6 C 1.38290 * 120.19654 * 359.97438 * 5 4 3
7 7 C 1.38267 * 120.20502 * 0.02562 * 6 5 4
8 8 C 1.38634 * 120.00706 * 359.74273 * 7 6 5
9 9 N 1.40200 * 120.09556 * 180.25228 * 8 7 6
10 10 C 1.34777 * 119.99858 * 329.05546 * 9 8 7
11 11 O 1.21592 * 120.00376 * 4.26090 * 10 9 8
12 12 N 1.34773 * 119.99815 * 184.26628 * 10 9 8
13 13 C 1.46927 * 120.63264 * 4.36791 * 12 10 9
14 14 C 1.52757 * 109.01326 * 233.59142 * 13 12 10
15 15 C 1.53042 * 109.38157 * 305.58736 * 14 13 12
16 16 C 1.50704 * 109.45029 * 181.25296 * 15 14 13
17 17 H 1.07997 * 119.99958 * 245.50283 * 16 15 14
18 18 C 1.37875 * 119.99657 * 65.50169 * 16 15 14
19 19 N 1.31506 * 120.00400 * 9.72687 * 18 16 15
20 20 Si 1.86804 * 119.99710 * 189.72369 * 18 16 15
21 21 H 1.48498 * 109.46790 * 94.99397 * 20 18 16
22 22 H 1.48494 * 109.47077 * 214.99480 * 20 18 16
23 23 H 1.48503 * 109.46969 * 334.99365 * 20 18 16
24 24 C 1.53045 * 109.53987 * 61.23813 * 15 14 13
25 25 C 1.46927 * 120.63221 * 184.65564 * 12 10 9
26 26 H 1.08998 * 109.47329 * 180.02562 * 1 2 3
27 27 H 1.09000 * 109.46876 * 300.00274 * 1 2 3
28 28 H 1.08994 * 109.47555 * 59.99839 * 1 2 3
29 29 H 1.08002 * 120.00535 * 359.95450 * 4 3 2
30 30 H 1.07999 * 119.90621 * 179.97438 * 5 4 3
31 31 H 1.08000 * 119.89836 * 179.97438 * 6 5 4
32 32 H 1.08002 * 119.99569 * 180.02562 * 7 6 5
33 33 H 0.96993 * 119.99719 * 149.05839 * 9 8 7
34 34 H 1.09005 * 109.58577 * 353.42830 * 13 12 10
35 35 H 1.09000 * 109.58622 * 113.84399 * 13 12 10
36 36 H 1.08995 * 109.57060 * 185.55315 * 14 13 12
37 37 H 1.08996 * 109.38937 * 65.51098 * 14 13 12
38 38 H 1.09005 * 109.46249 * 301.22060 * 15 14 13
39 39 H 0.96999 * 120.00475 * 179.97438 * 19 18 16
40 40 H 1.08993 * 109.50007 * 178.68316 * 24 15 14
41 41 H 1.09009 * 109.52165 * 58.59960 * 24 15 14
42 42 H 1.08999 * 109.58532 * 246.14963 * 25 12 10
43 43 H 1.09005 * 109.58370 * 6.43298 * 25 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 6 2.2103 1.7168 0.0000
4 6 1.1971 2.6651 0.0005
5 6 1.5107 4.0111 0.0011
6 6 2.8326 4.4174 0.0016
7 6 3.8485 3.4795 0.0011
8 6 3.5437 2.1271 0.0054
9 7 4.5723 1.1745 0.0102
10 6 5.7478 1.4491 -0.5893
11 8 5.9444 2.5501 -1.0665
12 7 6.7053 0.5033 -0.6599
13 6 6.4489 -0.8593 -0.1739
14 6 7.5376 -1.2442 0.8261
15 6 8.9115 -1.0555 0.1788
16 6 9.9859 -1.4639 1.1536
17 1 10.6739 -0.7262 1.5392
18 6 10.0903 -2.7794 1.5530
19 7 9.3849 -3.7088 0.9463
20 14 11.2339 -3.2416 2.9559
21 1 10.4659 -3.2869 4.2260
22 1 11.8298 -4.5754 2.6898
23 1 12.3151 -2.2296 3.0669
24 6 9.1005 0.4148 -0.2017
25 6 8.0276 0.8169 -1.2185
26 1 -0.3634 -1.0276 0.0005
27 1 -0.3633 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 0.1637 2.3513 0.0002
30 1 0.7211 4.7479 0.0011
31 1 3.0721 5.4705 0.0016
32 1 4.8797 3.8005 0.0019
33 1 4.4380 0.3180 0.4449
34 1 5.4756 -0.8956 0.3156
35 1 6.4644 -1.5553 -1.0127
36 1 7.4132 -2.2869 1.1180
37 1 7.4604 -0.6079 1.7077
38 1 8.9793 -1.6738 -0.7164
39 1 9.4587 -4.6344 1.2270
40 1 10.0883 0.5528 -0.6413
41 1 9.0086 1.0363 0.6891
42 1 8.1745 0.2604 -2.1441
43 1 8.0948 1.8860 -1.4203
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000334459877.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:43:04
Heat of formation + Delta-G solvation = -13.164503 kcal
Electronic energy + Delta-G solvation = -24611.796541 eV
Core-core repulsion = 21168.488352 eV
Total energy + Delta-G solvation = -3443.308189 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.95944 -39.98140 -38.47629 -35.99786 -35.32452 -33.10838 -32.25367 -31.85264
-30.37189 -29.65725 -27.94463 -25.09737 -24.15835 -24.02057 -23.31698 -21.69955
-20.49951 -19.65754 -18.66740 -18.24431 -18.03397 -16.87290 -16.67696 -16.41663
-16.26462 -15.59018 -15.33127 -15.05554 -14.94189 -14.78855 -14.75663 -14.50772
-14.33550 -14.17775 -13.70826 -13.41773 -13.33554 -13.19398 -12.93392 -12.77738
-12.50919 -12.38460 -12.19286 -12.04427 -11.59296 -11.50286 -11.18212 -11.10398
-10.92657 -10.84713 -10.66287 -10.41247 -9.73162 -9.26460 -8.30976 -8.12097
-6.19690 0.18748 0.36088 0.51949 1.40569 1.43557 1.46745 1.52033
1.53178 1.95291 2.44339 2.69130 2.78021 3.17676 3.85389 3.96692
4.09321 4.18168 4.28588 4.29688 4.30027 4.36146 4.39415 4.43942
4.51378 4.55469 4.62116 4.82820 4.84507 4.89941 4.92974 5.07030
5.18562 5.22219 5.26826 5.33283 5.44161 5.47248 5.58338 5.65477
5.87270 5.96669 5.99943 6.01294 6.37767 6.71573 6.90142 7.32809
7.46813 8.95448
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.018338 B = 0.003194 C = 0.002892
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1526.549623 B = 8765.014519 C = 9680.622360
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 S -0.164 6.164
3 C -0.125 4.125
4 C -0.114 4.114
5 C -0.116 4.116
6 C -0.107 4.107
7 C -0.134 4.134
8 C 0.161 3.839
9 N -0.677 5.677
10 C 0.705 3.295
11 O -0.608 6.608
12 N -0.614 5.614
13 C 0.120 3.880
14 C -0.107 4.107
15 C 0.046 3.954
16 C -0.535 4.535
17 H 0.048 0.952
18 C 0.021 3.979
19 N -0.912 5.912
20 Si 0.944 3.056
21 H -0.277 1.277
22 H -0.284 1.284
23 H -0.272 1.272
24 C -0.113 4.113
25 C 0.135 3.865
26 H 0.123 0.877
27 H 0.098 0.902
28 H 0.096 0.904
29 H 0.155 0.845
30 H 0.160 0.840
31 H 0.147 0.853
32 H 0.127 0.873
33 H 0.412 0.588
34 H 0.081 0.919
35 H 0.071 0.929
36 H 0.063 0.937
37 H 0.034 0.966
38 H 0.010 0.990
39 H 0.262 0.738
40 H 0.068 0.932
41 H 0.043 0.957
42 H 0.071 0.929
43 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.990 10.244 -1.728 23.420
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.297 4.297
2 S 0.076 5.924
3 C -0.240 4.240
4 C -0.137 4.137
5 C -0.137 4.137
6 C -0.127 4.127
7 C -0.156 4.156
8 C 0.061 3.939
9 N -0.327 5.327
10 C 0.407 3.593
11 O -0.489 6.489
12 N -0.349 5.349
13 C -0.003 4.003
14 C -0.146 4.146
15 C 0.027 3.973
16 C -0.573 4.573
17 H 0.066 0.934
18 C -0.178 4.178
19 N -0.551 5.551
20 Si 0.770 3.230
21 H -0.203 1.203
22 H -0.210 1.210
23 H -0.197 1.197
24 C -0.152 4.152
25 C 0.012 3.988
26 H 0.142 0.858
27 H 0.117 0.883
28 H 0.115 0.885
29 H 0.173 0.827
30 H 0.178 0.822
31 H 0.165 0.835
32 H 0.145 0.855
33 H 0.252 0.748
34 H 0.099 0.901
35 H 0.089 0.911
36 H 0.081 0.919
37 H 0.053 0.947
38 H 0.028 0.972
39 H 0.071 0.929
40 H 0.086 0.914
41 H 0.062 0.938
42 H 0.089 0.911
43 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -20.149 9.686 -2.094 22.455
hybrid contribution 0.310 -0.081 1.008 1.057
sum -19.839 9.605 -1.086 22.069
Atomic orbital electron populations
1.23774 0.90441 1.08573 1.06870 1.85636 1.11297 1.02478 1.92973
1.21597 0.94282 0.98127 1.10042 1.21338 0.98416 0.92815 1.01174
1.21408 0.96804 0.95727 0.99734 1.21406 0.92455 1.00118 0.98762
1.21446 1.01434 0.91231 1.01465 1.17348 0.85575 0.89116 1.01910
1.42812 1.12413 1.19714 1.57721 1.15874 0.80426 0.84023 0.78931
1.90808 1.80508 1.22814 1.54722 1.47427 1.12980 1.10396 1.64095
1.21684 0.98705 0.81775 0.98106 1.21650 0.95680 1.00654 0.96632
1.18594 0.92487 0.91178 0.95032 1.21499 1.15454 0.93692 1.26655
0.93400 1.25606 0.97326 0.96515 0.98390 1.70038 1.43121 1.01004
1.40915 0.85762 0.79394 0.77461 0.80353 1.20297 1.21013 1.19660
1.21878 0.97568 0.97982 0.97728 1.21564 0.79753 1.01446 0.95990
0.85817 0.88288 0.88487 0.82709 0.82207 0.83483 0.85480 0.74769
0.90090 0.91058 0.91879 0.94671 0.97169 0.92938 0.91371 0.93796
0.91061 0.89652
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.36 9.15 113.37 1.04 -0.33 16
2 S -0.16 -3.45 21.38 -56.49 -1.21 -4.65 16
3 C -0.13 -3.01 6.12 22.70 0.14 -2.87 16
4 C -0.11 -2.04 9.36 22.39 0.21 -1.83 16
5 C -0.12 -1.95 10.04 22.27 0.22 -1.72 16
6 C -0.11 -2.27 10.04 22.29 0.22 -2.05 16
7 C -0.13 -3.90 8.73 22.37 0.20 -3.71 16
8 C 0.16 4.78 6.38 38.20 0.24 5.02 16
9 N -0.68 -21.51 4.99 -316.66 -1.58 -23.09 16
10 C 0.71 25.90 8.17 179.06 1.46 27.36 16
11 O -0.61 -24.82 12.97 -4.01 -0.05 -24.88 16
12 N -0.61 -22.31 2.98 -837.73 -2.50 -24.80 16
13 C 0.12 4.26 6.41 86.22 0.55 4.81 16
14 C -0.11 -4.68 5.20 30.53 0.16 -4.52 16
15 C 0.05 2.18 1.93 -11.51 -0.02 2.16 16
16 C -0.53 -28.75 8.48 25.60 0.22 -28.53 16
17 H 0.05 2.58 7.77 -2.91 -0.02 2.56 16
18 C 0.02 1.14 5.19 84.66 0.44 1.58 16
19 N -0.91 -50.81 12.17 21.45 0.26 -50.55 16
20 Si 0.94 42.86 29.55 68.60 2.03 44.88 16
21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16
22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16
23 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16
24 C -0.11 -4.62 5.30 30.67 0.16 -4.46 16
25 C 0.13 4.91 6.42 86.36 0.55 5.47 16
26 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16
27 H 0.10 0.79 7.75 -2.39 -0.02 0.77 16
28 H 0.10 0.82 7.75 -2.39 -0.02 0.80 16
29 H 0.16 1.75 5.88 -2.91 -0.02 1.73 16
30 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16
31 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16
32 H 0.13 4.33 5.91 -2.91 -0.02 4.31 16
33 H 0.41 12.10 5.32 -92.71 -0.49 11.61 16
34 H 0.08 2.47 5.57 -2.38 -0.01 2.46 16
35 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16
36 H 0.06 3.05 6.89 -2.39 -0.02 3.04 16
37 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16
38 H 0.01 0.54 8.08 -2.38 -0.02 0.52 16
39 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16
40 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16
41 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16
42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16
43 H 0.09 3.06 7.03 -2.38 -0.02 3.04 16
Total: -1.00 -65.34 353.49 3.28 -62.06
By element:
Atomic # 1 Polarization: 24.12 SS G_CDS: 0.53 Total: 24.65 kcal
Atomic # 6 Polarization: -9.42 SS G_CDS: 5.80 Total: -3.62 kcal
Atomic # 7 Polarization: -94.63 SS G_CDS: -3.81 Total: -98.44 kcal
Atomic # 8 Polarization: -24.82 SS G_CDS: -0.05 Total: -24.88 kcal
Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal
Atomic # 16 Polarization: -3.45 SS G_CDS: -1.21 Total: -4.65 kcal
Total: -65.34 3.28 -62.06 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000334459877.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.893 kcal
(2) G-P(sol) polarization free energy of solvation -65.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.449 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.057 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.165 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds