Wall clock time and date at job start Tue Mar 31 2020 12:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46193 * 110.99842 * 2 1 4 4 C 1.51271 * 109.10221 * 144.77419 * 3 2 1 5 5 C 1.53806 * 109.63098 * 92.40891 * 4 3 2 6 6 N 1.47609 * 111.29831 * 319.96250 * 5 4 3 7 7 C 1.34775 * 118.74658 * 138.34395 * 6 5 4 8 8 O 1.21556 * 119.99852 * 352.17861 * 7 6 5 9 9 C 1.47861 * 120.00220 * 172.18189 * 7 6 5 10 10 C 1.39675 * 120.09942 * 26.88835 * 9 7 6 11 11 C 1.38046 * 120.03660 * 179.97438 * 10 9 7 12 12 C 1.38181 * 120.24238 * 359.97438 * 11 10 9 13 13 C 1.39177 * 120.20451 * 0.02562 * 12 11 10 14 14 S 1.76197 * 120.02325 * 179.97438 * 13 12 11 15 15 C 1.76196 * 100.00362 * 272.90207 * 14 13 12 16 16 H 1.08005 * 119.99714 * 354.49741 * 15 14 13 17 17 C 1.38726 * 120.00039 * 174.50567 * 15 14 13 18 18 N 1.31614 * 120.00295 * 359.97438 * 17 15 14 19 19 Si 1.86810 * 119.99887 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46926 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47077 * 119.99838 * 19 17 15 22 22 H 1.48494 * 109.47046 * 239.99959 * 19 17 15 23 23 C 1.38878 * 119.95735 * 359.74429 * 13 12 11 24 24 C 1.44886 * 122.50843 * 318.31382 * 6 5 4 25 25 C 1.41448 * 110.99862 * 228.96996 * 2 1 3 26 26 H 1.09003 * 109.47100 * 187.08131 * 1 2 3 27 27 H 1.08990 * 109.47470 * 67.07901 * 1 2 3 28 28 H 1.08999 * 109.46969 * 307.07667 * 1 2 3 29 29 H 1.09005 * 109.53761 * 264.65705 * 3 2 1 30 30 H 1.09004 * 109.53273 * 24.88639 * 3 2 1 31 31 H 1.09000 * 109.44274 * 332.36226 * 4 3 2 32 32 H 1.08996 * 109.42256 * 212.44591 * 4 3 2 33 33 H 1.08994 * 109.11139 * 199.49414 * 5 4 3 34 34 H 1.08998 * 109.06227 * 80.39946 * 5 4 3 35 35 H 1.07989 * 119.98235 * 359.97438 * 10 9 7 36 36 H 1.07999 * 119.87433 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.89623 * 179.97438 * 12 11 10 38 38 H 0.97002 * 120.00702 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.12042 * 180.26889 * 23 13 12 40 40 H 1.08998 * 109.43330 * 329.66489 * 24 6 5 41 41 H 1.09001 * 109.40008 * 209.77081 * 24 6 5 42 42 H 1.09004 * 109.38392 * 311.83933 * 25 2 1 43 43 H 1.08997 * 109.38554 * 71.62332 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9929 1.3648 0.0000 4 6 3.2604 1.4086 0.8245 5 6 4.4782 1.1839 -0.0877 6 7 4.2047 0.1463 -1.1013 7 6 4.6318 0.3451 -2.3640 8 8 5.1019 1.4193 -2.6846 9 6 4.5284 -0.7433 -3.3595 10 6 3.5437 -1.7247 -3.2247 11 6 3.4481 -2.7400 -4.1551 12 6 4.3238 -2.7904 -5.2228 13 6 5.3088 -1.8178 -5.3669 14 16 6.4235 -1.8870 -6.7297 15 6 7.6674 -2.9365 -6.0547 16 1 7.6099 -3.2470 -5.0219 17 6 8.7208 -3.3638 -6.8499 18 7 8.7908 -2.9857 -8.1086 19 14 10.0401 -4.4759 -6.1340 20 1 9.7332 -4.7533 -4.7077 21 1 10.0750 -5.7531 -6.8908 22 1 11.3610 -3.8049 -6.2341 23 6 5.4096 -0.7899 -4.4384 24 6 3.4952 -1.0781 -0.7903 25 6 1.9759 -0.8669 -0.9962 26 1 -0.3633 -1.0199 0.1267 27 1 -0.3634 0.4002 -0.9464 28 1 -0.3633 0.6196 0.8199 29 1 2.2128 1.6709 -1.0228 30 1 1.2535 2.0390 0.4323 31 1 3.2266 0.6271 1.5836 32 1 3.3444 2.3814 1.3088 33 1 5.3275 0.8734 0.5208 34 1 4.7231 2.1190 -0.5913 35 1 2.8568 -1.6892 -2.3922 36 1 2.6854 -3.4972 -4.0486 37 1 4.2442 -3.5874 -5.9472 38 1 9.5272 -3.2848 -8.6647 39 1 6.1703 -0.0313 -4.5501 40 1 3.6858 -1.3543 0.2467 41 1 3.8429 -1.8750 -1.4477 42 1 1.4652 -1.8278 -0.9335 43 1 1.8029 -0.4288 -1.9791 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335837569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:29 Heat of formation + Delta-G solvation = 41.976263 kcal Electronic energy + Delta-G solvation = -24791.250346 eV Core-core repulsion = 21350.333240 eV Total energy + Delta-G solvation = -3440.917106 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.01929 -38.60794 -37.80813 -35.33025 -33.77304 -32.51812 -30.76255 -30.46051 -29.31026 -26.87668 -25.59544 -25.21011 -23.76115 -22.55948 -21.74602 -20.78503 -19.46175 -17.99297 -17.12045 -17.02301 -16.26283 -16.06241 -15.59596 -15.20800 -15.04082 -14.86330 -14.42756 -14.30575 -13.86644 -13.58071 -13.33453 -13.23393 -12.95991 -12.67767 -12.38754 -12.29707 -12.13914 -11.96644 -11.65756 -11.23964 -11.16404 -11.14563 -11.10052 -11.03115 -10.98177 -10.60952 -9.95960 -9.61988 -9.17940 -9.00721 -8.80290 -8.56929 -8.48520 -7.97626 -6.71721 -6.29452 -4.03345 1.20935 1.65080 2.88744 2.97660 3.18187 3.20044 3.27577 3.46514 3.54113 4.03924 4.22987 4.42274 4.55197 4.63593 4.76831 4.82003 4.97354 5.06654 5.10229 5.14400 5.19754 5.23622 5.29621 5.32244 5.33782 5.43270 5.47477 5.52440 5.63197 5.67090 5.74040 5.79694 5.87627 5.93331 6.03461 6.25907 6.43750 6.56522 6.64650 6.76215 6.93484 7.03759 7.19586 7.35140 7.56549 8.22297 8.31854 9.16227 10.77312 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.022048 B = 0.003138 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.636508 B = 8921.252691 C = 9267.536764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.565 5.565 3 C 0.070 3.930 4 C -0.129 4.129 5 C 0.110 3.890 6 N -0.606 5.606 7 C 0.560 3.440 8 O -0.536 6.536 9 C -0.152 4.152 10 C -0.132 4.132 11 C -0.142 4.142 12 C -0.056 4.056 13 C -0.105 4.105 14 S -0.037 6.037 15 C -0.519 4.519 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.870 5.870 19 Si 0.921 3.079 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.022 4.022 24 C 0.080 3.920 25 C 0.046 3.954 26 H 0.067 0.933 27 H 0.024 0.976 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.157 0.843 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.269 0.731 39 H 0.135 0.865 40 H 0.085 0.915 41 H 0.118 0.882 42 H 0.089 0.911 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.078 3.588 17.935 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.289 5.289 3 C -0.057 4.057 4 C -0.168 4.168 5 C -0.012 4.012 6 N -0.339 5.339 7 C 0.350 3.650 8 O -0.413 6.413 9 C -0.157 4.157 10 C -0.150 4.150 11 C -0.162 4.162 12 C -0.077 4.077 13 C -0.216 4.216 14 S 0.198 5.802 15 C -0.666 4.666 16 H 0.094 0.906 17 C -0.136 4.136 18 N -0.505 5.505 19 Si 0.747 3.253 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.043 4.043 24 C -0.044 4.044 25 C -0.084 4.084 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.174 0.826 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.079 0.921 39 H 0.153 0.847 40 H 0.103 0.897 41 H 0.135 0.865 42 H 0.107 0.893 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.571 4.481 16.920 23.427 hybrid contribution 0.566 -1.046 0.902 1.493 sum -15.005 3.436 17.823 23.550 Atomic orbital electron populations 1.22343 0.86501 1.02346 1.00330 1.58340 1.07435 1.12190 1.50980 1.21539 0.96494 0.87971 0.99675 1.21863 0.93714 1.02773 0.98414 1.21858 0.97095 0.92346 0.89877 1.47622 1.57071 1.20026 1.09165 1.18613 0.77039 0.87491 0.81814 1.90747 1.45454 1.26041 1.79098 1.19802 1.00774 0.97307 0.97818 1.22571 0.98647 0.94111 0.99684 1.21129 1.00345 0.99276 0.95472 1.22006 0.92462 0.96972 0.96257 1.22817 1.00703 0.96183 1.01859 1.83639 1.18141 1.65386 1.13054 1.22871 1.09437 1.34604 0.99720 0.90606 1.25003 0.97771 0.96173 0.94666 1.69993 1.31506 1.43197 1.05851 0.86070 0.80424 0.79660 0.79163 1.19505 1.20462 1.20455 1.21855 0.95867 0.96606 0.90021 1.22619 0.90269 0.87813 1.03671 1.21908 0.96019 0.97473 0.93004 0.91372 0.95698 0.91437 0.93718 0.91045 0.90190 0.90304 0.91772 0.89153 0.82618 0.85893 0.85167 0.92107 0.84674 0.89691 0.86468 0.89273 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.42 60.07 0.57 0.78 16 2 N -0.56 -4.79 4.09 -247.81 -1.01 -5.80 16 3 C 0.07 0.62 5.32 -5.08 -0.03 0.60 16 4 C -0.13 -1.05 5.78 -27.18 -0.16 -1.20 16 5 C 0.11 1.19 6.19 -3.02 -0.02 1.17 16 6 N -0.61 -7.70 2.18 -173.56 -0.38 -8.08 16 7 C 0.56 9.38 7.45 -12.32 -0.09 9.29 16 8 O -0.54 -10.71 15.93 5.32 0.08 -10.62 16 9 C -0.15 -2.62 5.61 -105.00 -0.59 -3.21 16 10 C -0.13 -1.85 7.11 -39.12 -0.28 -2.13 16 11 C -0.14 -2.06 10.02 -39.67 -0.40 -2.46 16 12 C -0.06 -1.02 9.79 -39.25 -0.38 -1.41 16 13 C -0.10 -2.27 5.45 -39.00 -0.21 -2.48 16 14 S -0.04 -0.95 21.41 -107.50 -2.30 -3.25 16 15 C -0.52 -14.62 9.46 30.91 0.29 -14.33 16 16 H 0.08 2.12 7.79 -52.48 -0.41 1.71 16 17 C 0.07 2.04 5.49 -17.46 -0.10 1.94 16 18 N -0.87 -25.44 13.22 55.49 0.73 -24.70 16 19 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.02 -0.45 9.34 -38.92 -0.36 -0.81 16 24 C 0.08 0.81 5.00 -3.97 -0.02 0.79 16 25 C 0.05 0.41 3.73 -5.74 -0.02 0.39 16 26 H 0.07 0.40 7.97 -51.93 -0.41 -0.02 16 27 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.39 7.87 -51.93 -0.41 -0.01 16 29 H 0.04 0.51 7.32 -51.93 -0.38 0.13 16 30 H 0.07 0.53 7.54 -51.93 -0.39 0.14 16 31 H 0.08 0.64 7.98 -51.93 -0.41 0.22 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.12 6.93 -51.93 -0.36 0.76 16 35 H 0.16 1.68 2.10 -52.49 -0.11 1.57 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.13 2.31 8.06 -52.49 -0.42 1.88 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.14 2.95 7.87 -52.48 -0.41 2.54 16 40 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 41 H 0.12 1.25 4.28 -52.05 -0.22 1.03 16 42 H 0.09 0.62 7.87 -51.93 -0.41 0.21 16 43 H 0.04 0.40 7.09 -51.93 -0.37 0.03 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -32.72 352.44 -10.36 -43.08 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.97 Total: 0.85 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -1.80 Total: -13.08 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: -0.66 Total: -38.59 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.30 Total: -3.25 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.72 -10.36 -43.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335837569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.052 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds