Wall clock time and date at job start Tue Mar 31 2020 12:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46193 * 110.99842 * 2 1 4 4 C 1.51271 * 109.10221 * 144.77419 * 3 2 1 5 5 C 1.53806 * 109.63098 * 92.40891 * 4 3 2 6 6 N 1.47609 * 111.29831 * 319.96250 * 5 4 3 7 7 C 1.34775 * 118.74658 * 138.34395 * 6 5 4 8 8 O 1.21556 * 119.99852 * 352.17861 * 7 6 5 9 9 C 1.47861 * 120.00220 * 172.18189 * 7 6 5 10 10 C 1.39675 * 120.09942 * 26.88835 * 9 7 6 11 11 C 1.38046 * 120.03660 * 179.97438 * 10 9 7 12 12 C 1.38181 * 120.24238 * 359.97438 * 11 10 9 13 13 C 1.39177 * 120.20451 * 0.02562 * 12 11 10 14 14 S 1.76197 * 120.02325 * 179.97438 * 13 12 11 15 15 C 1.76196 * 100.00362 * 272.90207 * 14 13 12 16 16 H 1.08005 * 119.99714 * 354.49741 * 15 14 13 17 17 C 1.38726 * 120.00039 * 174.50567 * 15 14 13 18 18 N 1.31614 * 120.00295 * 359.97438 * 17 15 14 19 19 Si 1.86810 * 119.99887 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46926 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47077 * 119.99838 * 19 17 15 22 22 H 1.48494 * 109.47046 * 239.99959 * 19 17 15 23 23 C 1.38878 * 119.95735 * 359.74429 * 13 12 11 24 24 C 1.44886 * 122.50843 * 318.31382 * 6 5 4 25 25 C 1.41448 * 110.99862 * 228.96996 * 2 1 3 26 26 H 1.09003 * 109.47100 * 187.08131 * 1 2 3 27 27 H 1.08990 * 109.47470 * 67.07901 * 1 2 3 28 28 H 1.08999 * 109.46969 * 307.07667 * 1 2 3 29 29 H 1.09005 * 109.53761 * 264.65705 * 3 2 1 30 30 H 1.09004 * 109.53273 * 24.88639 * 3 2 1 31 31 H 1.09000 * 109.44274 * 332.36226 * 4 3 2 32 32 H 1.08996 * 109.42256 * 212.44591 * 4 3 2 33 33 H 1.08994 * 109.11139 * 199.49414 * 5 4 3 34 34 H 1.08998 * 109.06227 * 80.39946 * 5 4 3 35 35 H 1.07989 * 119.98235 * 359.97438 * 10 9 7 36 36 H 1.07999 * 119.87433 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.89623 * 179.97438 * 12 11 10 38 38 H 0.97002 * 120.00702 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.12042 * 180.26889 * 23 13 12 40 40 H 1.08998 * 109.43330 * 329.66489 * 24 6 5 41 41 H 1.09001 * 109.40008 * 209.77081 * 24 6 5 42 42 H 1.09004 * 109.38392 * 311.83933 * 25 2 1 43 43 H 1.08997 * 109.38554 * 71.62332 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9929 1.3648 0.0000 4 6 3.2604 1.4086 0.8245 5 6 4.4782 1.1839 -0.0877 6 7 4.2047 0.1463 -1.1013 7 6 4.6318 0.3451 -2.3640 8 8 5.1019 1.4193 -2.6846 9 6 4.5284 -0.7433 -3.3595 10 6 3.5437 -1.7247 -3.2247 11 6 3.4481 -2.7400 -4.1551 12 6 4.3238 -2.7904 -5.2228 13 6 5.3088 -1.8178 -5.3669 14 16 6.4235 -1.8870 -6.7297 15 6 7.6674 -2.9365 -6.0547 16 1 7.6099 -3.2470 -5.0219 17 6 8.7208 -3.3638 -6.8499 18 7 8.7908 -2.9857 -8.1086 19 14 10.0401 -4.4759 -6.1340 20 1 9.7332 -4.7533 -4.7077 21 1 10.0750 -5.7531 -6.8908 22 1 11.3610 -3.8049 -6.2341 23 6 5.4096 -0.7899 -4.4384 24 6 3.4952 -1.0781 -0.7903 25 6 1.9759 -0.8669 -0.9962 26 1 -0.3633 -1.0199 0.1267 27 1 -0.3634 0.4002 -0.9464 28 1 -0.3633 0.6196 0.8199 29 1 2.2128 1.6709 -1.0228 30 1 1.2535 2.0390 0.4323 31 1 3.2266 0.6271 1.5836 32 1 3.3444 2.3814 1.3088 33 1 5.3275 0.8734 0.5208 34 1 4.7231 2.1190 -0.5913 35 1 2.8568 -1.6892 -2.3922 36 1 2.6854 -3.4972 -4.0486 37 1 4.2442 -3.5874 -5.9472 38 1 9.5272 -3.2848 -8.6647 39 1 6.1703 -0.0313 -4.5501 40 1 3.6858 -1.3543 0.2467 41 1 3.8429 -1.8750 -1.4477 42 1 1.4652 -1.8278 -0.9335 43 1 1.8029 -0.4288 -1.9791 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335837569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:29 Heat of formation + Delta-G solvation = 21.329042 kcal Electronic energy + Delta-G solvation = -24792.145676 eV Core-core repulsion = 21350.333240 eV Total energy + Delta-G solvation = -3441.812436 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.12733 -39.63477 -39.09346 -36.33147 -34.67078 -34.64083 -32.14612 -31.70589 -30.17541 -27.78427 -27.68933 -25.93660 -24.93527 -23.87869 -22.82532 -21.58243 -20.64842 -19.81803 -18.51748 -18.16132 -17.31067 -16.99821 -16.93754 -16.72080 -16.24273 -16.01021 -15.71609 -15.58354 -15.00053 -14.90646 -14.53005 -14.39471 -14.01236 -13.87119 -13.65343 -13.25637 -13.10346 -12.99072 -12.93748 -12.83649 -12.69166 -12.55005 -12.26098 -12.10009 -11.90858 -11.75353 -11.61843 -11.24816 -10.97455 -10.77468 -10.06849 -9.73534 -9.64105 -9.18453 -8.83305 -8.39912 -6.20875 -0.18686 0.20188 1.29512 1.36329 1.46657 1.61437 1.64463 1.90239 2.22886 2.68400 2.89894 2.93018 3.35309 3.40646 3.78626 3.83948 3.91012 3.91720 4.04765 4.16317 4.21667 4.33554 4.41778 4.42956 4.55299 4.56634 4.62055 4.64709 4.68114 4.78298 4.84491 4.87929 4.97790 5.05451 5.09322 5.16252 5.26250 5.26657 5.37422 5.47180 5.49098 5.82961 6.13914 6.15190 6.20404 6.37776 6.97657 7.00096 8.67527 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.022048 B = 0.003138 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.636508 B = 8921.252691 C = 9267.536764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.564 5.564 3 C 0.069 3.931 4 C -0.116 4.116 5 C 0.104 3.896 6 N -0.593 5.593 7 C 0.553 3.447 8 O -0.583 6.583 9 C -0.156 4.156 10 C -0.106 4.106 11 C -0.120 4.120 12 C -0.064 4.064 13 C -0.125 4.125 14 S -0.099 6.099 15 C -0.534 4.534 16 H 0.068 0.932 17 C 0.019 3.981 18 N -0.907 5.907 19 Si 0.995 3.005 20 H -0.265 1.265 21 H -0.265 1.265 22 H -0.273 1.273 23 C -0.047 4.047 24 C 0.072 3.928 25 C 0.045 3.955 26 H 0.083 0.917 27 H 0.017 0.983 28 H 0.077 0.923 29 H 0.013 0.987 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.199 0.801 36 H 0.178 0.822 37 H 0.133 0.867 38 H 0.274 0.726 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.560 1.477 21.561 28.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.288 5.288 3 C -0.058 4.058 4 C -0.155 4.155 5 C -0.017 4.017 6 N -0.324 5.324 7 C 0.343 3.657 8 O -0.464 6.464 9 C -0.161 4.161 10 C -0.123 4.123 11 C -0.139 4.139 12 C -0.085 4.085 13 C -0.236 4.236 14 S 0.135 5.865 15 C -0.681 4.681 16 H 0.086 0.914 17 C -0.186 4.186 18 N -0.543 5.543 19 Si 0.816 3.184 20 H -0.189 1.189 21 H -0.190 1.190 22 H -0.198 1.198 23 C -0.069 4.069 24 C -0.051 4.051 25 C -0.084 4.084 26 H 0.102 0.898 27 H 0.036 0.964 28 H 0.096 0.904 29 H 0.032 0.968 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.215 0.785 36 H 0.195 0.805 37 H 0.151 0.849 38 H 0.083 0.917 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.140 0.860 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -18.092 2.358 20.583 27.505 hybrid contribution 1.184 -0.307 -0.073 1.225 sum -16.909 2.050 20.509 26.660 Atomic orbital electron populations 1.22425 0.85188 1.03577 1.00410 1.58420 1.08538 1.11577 1.50302 1.21571 0.97355 0.88824 0.98098 1.21815 0.91735 1.04275 0.97634 1.22053 0.99198 0.90888 0.89589 1.47729 1.55654 1.21151 1.07867 1.18655 0.77184 0.86732 0.83135 1.90721 1.47862 1.27681 1.80148 1.19919 1.00831 0.98464 0.96872 1.23101 0.97151 0.92006 1.00029 1.21634 0.99548 0.99805 0.92944 1.22100 0.92446 0.96090 0.97892 1.22459 1.01477 0.98610 1.01091 1.83559 1.20200 1.65819 1.16881 1.23077 1.10675 1.34810 0.99578 0.91368 1.26029 0.99989 0.97602 0.94970 1.70116 1.32522 1.44444 1.07250 0.84962 0.77051 0.77756 0.78582 1.18862 1.19012 1.19802 1.21559 0.97020 0.96327 0.91948 1.22863 0.91022 0.86226 1.04945 1.21943 0.95031 0.99126 0.92334 0.89814 0.96391 0.90415 0.96835 0.89356 0.88985 0.88430 0.90657 0.91504 0.78491 0.80464 0.84926 0.91680 0.87950 0.87384 0.86788 0.85964 0.96244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.42 127.69 1.20 1.50 16 2 N -0.56 -7.32 4.09 -937.94 -3.84 -11.16 16 3 C 0.07 1.04 5.32 85.87 0.46 1.50 16 4 C -0.12 -1.56 5.78 30.30 0.18 -1.38 16 5 C 0.10 2.14 6.19 86.44 0.53 2.67 16 6 N -0.59 -14.33 2.18 -821.29 -1.79 -16.12 16 7 C 0.55 18.91 7.45 86.79 0.65 19.55 16 8 O -0.58 -24.80 15.93 -3.89 -0.06 -24.86 16 9 C -0.16 -5.41 5.61 -20.11 -0.11 -5.53 16 10 C -0.11 -2.65 7.11 22.57 0.16 -2.49 16 11 C -0.12 -3.04 10.02 22.21 0.22 -2.82 16 12 C -0.06 -2.32 9.79 22.48 0.22 -2.10 16 13 C -0.13 -5.67 5.45 22.65 0.12 -5.55 16 14 S -0.10 -5.52 21.41 -56.49 -1.21 -6.73 16 15 C -0.53 -31.45 9.46 67.94 0.64 -30.80 16 16 H 0.07 3.97 7.79 -2.91 -0.02 3.94 16 17 C 0.02 1.10 5.49 84.84 0.47 1.57 16 18 N -0.91 -54.83 13.22 21.63 0.29 -54.54 16 19 Si 0.99 44.38 29.55 68.60 2.03 46.41 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 C -0.05 -2.04 9.34 22.70 0.21 -1.83 16 24 C 0.07 1.19 5.00 87.28 0.44 1.62 16 25 C 0.05 0.61 3.73 87.90 0.33 0.94 16 26 H 0.08 0.56 7.97 -2.39 -0.02 0.54 16 27 H 0.02 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.08 0.60 7.87 -2.39 -0.02 0.58 16 29 H 0.01 0.29 7.32 -2.38 -0.02 0.27 16 30 H 0.09 1.04 7.54 -2.38 -0.02 1.02 16 31 H 0.09 1.08 7.98 -2.39 -0.02 1.06 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.71 6.93 -2.39 -0.02 1.70 16 35 H 0.20 3.36 2.10 -2.92 -0.01 3.35 16 36 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.10 5.01 7.87 -2.91 -0.02 4.99 16 40 H 0.11 1.41 8.11 -2.39 -0.02 1.39 16 41 H 0.11 1.97 4.28 -2.50 -0.01 1.96 16 42 H 0.12 0.92 7.87 -2.38 -0.02 0.90 16 43 H 0.02 0.35 7.09 -2.39 -0.02 0.33 16 Total: -1.00 -78.21 352.44 2.14 -76.07 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.02 Total: 14.10 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 5.72 Total: -23.16 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -5.35 Total: -81.82 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.06 Total: -24.86 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -5.52 SS G_CDS: -1.21 Total: -6.73 kcal Total: -78.21 2.14 -76.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335837569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.397 kcal (2) G-P(sol) polarization free energy of solvation -78.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds