Wall clock time and date at job start Tue Mar 31 2020 12:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81406 * 103.00036 * 2 1 4 4 C 1.50697 * 109.47170 * 179.97438 * 3 2 1 5 5 C 1.38281 * 119.92578 * 89.99895 * 4 3 2 6 6 C 1.38113 * 120.06692 * 180.02562 * 5 4 3 7 7 C 1.38863 * 119.93386 * 0.02562 * 6 5 4 8 8 N 1.39942 * 120.07736 * 179.97438 * 7 6 5 9 9 C 1.34783 * 119.99652 * 33.63586 * 8 7 6 10 10 O 1.21590 * 119.99900 * 5.28117 * 9 8 7 11 11 N 1.34778 * 119.99706 * 185.28791 * 9 8 7 12 12 C 1.46498 * 119.99496 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47002 * 184.82291 * 12 11 9 14 14 C 1.50703 * 115.54828 * 304.60658 * 13 12 11 15 15 H 1.07998 * 119.99691 * 95.01491 * 14 13 12 16 16 C 1.37870 * 120.00155 * 274.74180 * 14 13 12 17 17 N 1.31510 * 120.00401 * 355.42502 * 16 14 13 18 18 Si 1.86803 * 119.99797 * 175.42575 * 16 14 13 19 19 H 1.48497 * 109.47427 * 59.99982 * 18 16 14 20 20 H 1.48501 * 109.46996 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47038 * 299.99805 * 18 16 14 22 22 C 1.52999 * 117.50091 * 90.27945 * 13 12 11 23 23 C 1.52998 * 117.50280 * 158.94179 * 13 12 11 24 24 C 1.38868 * 119.85492 * 0.25194 * 7 6 5 25 25 C 1.38113 * 119.93027 * 359.49126 * 24 7 6 26 26 H 1.08997 * 109.47366 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47217 * 300.00106 * 1 2 3 28 28 H 1.09001 * 109.46954 * 60.00106 * 1 2 3 29 29 H 1.08994 * 109.46922 * 59.99846 * 3 2 1 30 30 H 1.08998 * 109.46925 * 299.99899 * 3 2 1 31 31 H 1.08001 * 119.96965 * 0.04636 * 5 4 3 32 32 H 1.08007 * 120.03746 * 179.97438 * 6 5 4 33 33 H 0.96994 * 120.00559 * 213.63541 * 8 7 6 34 34 H 0.96990 * 120.00313 * 359.97438 * 11 9 8 35 35 H 1.08998 * 109.47510 * 64.82419 * 12 11 9 36 36 H 1.09001 * 109.47354 * 304.81850 * 12 11 9 37 37 H 0.96997 * 120.00215 * 185.00718 * 17 16 14 38 38 H 1.09002 * 117.49786 * 215.00276 * 22 13 12 39 39 H 1.08993 * 117.49617 * 0.02566 * 22 13 12 40 40 H 1.09008 * 117.49275 * 359.97438 * 23 13 12 41 41 H 1.08995 * 117.50317 * 144.96881 * 23 13 12 42 42 H 1.08005 * 120.03483 * 179.71991 * 24 7 6 43 43 H 1.08003 * 119.96488 * 180.24832 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7195 1.9374 0.0006 5 6 4.4055 2.0150 -1.1975 6 6 5.7779 2.1701 -1.2003 7 6 6.4689 2.2477 0.0016 8 7 7.8595 2.4043 0.0023 9 6 8.4572 3.1226 -0.9691 10 8 7.7830 3.7137 -1.7903 11 7 9.8021 3.1853 -1.0302 12 6 10.4517 3.9656 -2.0863 13 6 11.9674 3.7747 -2.0025 14 6 12.5908 4.0998 -0.6695 15 1 12.7615 3.3151 0.0525 16 6 12.9482 5.3982 -0.3740 17 7 12.8289 6.3372 -1.2870 18 14 13.6019 5.8236 1.3234 19 1 14.8367 5.0425 1.5884 20 1 13.9120 7.2746 1.3850 21 1 12.5773 5.4920 2.3459 22 6 12.5806 2.6276 -2.8081 23 6 12.7879 4.0758 -3.2583 24 6 5.7777 2.1636 1.2031 25 6 4.4047 2.0138 1.1992 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8032 2.2371 0.8899 30 1 1.8032 2.2371 -0.8900 31 1 3.8675 1.9546 -2.1321 32 1 6.3132 2.2303 -2.1365 33 1 8.3933 1.9960 0.7017 34 1 10.3399 2.7140 -0.3749 35 1 10.2109 5.0210 -1.9588 36 1 10.0961 3.6267 -3.0594 37 1 13.1476 7.2348 -1.1041 38 1 13.4349 2.1080 -2.3740 39 1 11.9042 2.0092 -3.3982 40 1 12.2478 4.4096 -4.1443 41 1 13.7784 4.5095 -3.1203 42 1 6.3128 2.2190 2.1397 43 1 3.8661 1.9524 2.1333 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432092513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:37 Heat of formation + Delta-G solvation = 16.024314 kcal Electronic energy + Delta-G solvation = -23457.167081 eV Core-core repulsion = 20015.124614 eV Total energy + Delta-G solvation = -3442.042467 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.35925 -38.71391 -36.82129 -34.84164 -33.46667 -32.02286 -31.48221 -30.92034 -29.29027 -27.05925 -25.83179 -24.97309 -22.97550 -21.67785 -21.14633 -20.28183 -19.45715 -17.99011 -17.49132 -16.63314 -16.08180 -15.63785 -15.46461 -14.86991 -14.70022 -14.53880 -14.35382 -14.10145 -13.93961 -13.85078 -13.39491 -13.35203 -13.24368 -12.80510 -12.69054 -12.43099 -11.92278 -11.66541 -11.63831 -11.16863 -11.02173 -11.00702 -10.58843 -10.45593 -10.25832 -10.00294 -9.78441 -9.51160 -9.08655 -8.89466 -8.55254 -8.40411 -8.14903 -7.95128 -7.80329 -6.12022 -4.22704 0.88605 1.44461 1.78939 2.34548 2.99704 3.22677 3.29299 3.30035 3.50650 3.96044 4.30069 4.52081 4.60147 4.65662 4.78142 4.80675 4.99604 5.03240 5.15681 5.22121 5.32272 5.34320 5.41245 5.62232 5.68863 5.97183 6.03367 6.25055 6.29664 6.37095 6.45904 6.50853 6.54272 6.62926 6.68859 6.80240 7.09041 7.10899 7.20132 7.29108 7.37690 7.54241 7.75812 8.28709 8.46423 8.78665 8.98830 9.44904 10.94955 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.002300 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.297324 B =12170.378779 C =12811.129552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.259 6.259 3 C -0.035 4.035 4 C -0.109 4.109 5 C -0.078 4.078 6 C -0.122 4.122 7 C 0.191 3.809 8 N -0.693 5.693 9 C 0.695 3.305 10 O -0.586 6.586 11 N -0.710 5.710 12 C 0.180 3.820 13 C 0.022 3.978 14 C -0.502 4.502 15 H 0.059 0.941 16 C 0.074 3.926 17 N -0.873 5.873 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.211 4.211 23 C -0.141 4.141 24 C -0.156 4.156 25 C -0.078 4.078 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.139 0.861 33 H 0.406 0.594 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.126 0.874 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.081 -10.401 4.200 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.031 6.031 3 C -0.182 4.182 4 C -0.112 4.112 5 C -0.098 4.098 6 C -0.143 4.143 7 C 0.094 3.906 8 N -0.340 5.340 9 C 0.396 3.604 10 O -0.464 6.464 11 N -0.362 5.362 12 C 0.057 3.943 13 C 0.021 3.979 14 C -0.540 4.540 15 H 0.077 0.923 16 C -0.130 4.130 17 N -0.508 5.508 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.248 4.248 23 C -0.179 4.179 24 C -0.177 4.177 25 C -0.099 4.099 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.142 0.858 32 H 0.157 0.843 33 H 0.242 0.758 34 H 0.235 0.765 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.144 0.856 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.973 -10.486 3.369 21.938 hybrid contribution 0.160 1.057 1.576 1.905 sum -18.813 -9.429 4.945 21.617 Atomic orbital electron populations 1.23398 0.95016 1.06377 1.04767 1.87277 1.06293 1.11484 1.98015 1.22229 0.96314 0.94235 1.05399 1.19028 0.92676 1.05519 0.93934 1.20859 0.93710 0.98031 0.97232 1.21206 0.94108 1.00792 0.98171 1.17593 0.82371 0.96750 0.93882 1.42791 1.05385 1.55537 1.30335 1.16049 0.83055 0.79726 0.81615 1.90895 1.63594 1.49641 1.42268 1.45188 1.03097 1.53775 1.34142 1.20877 0.92323 0.94618 0.86490 1.19043 0.88877 0.96950 0.92998 1.20268 1.42050 0.93005 0.98670 0.92255 1.24993 0.94913 0.96345 0.96778 1.69969 1.44720 1.02638 1.33483 0.86689 0.79307 0.77444 0.84709 1.20268 1.21266 1.20182 1.23050 1.03466 0.91808 1.06464 1.22459 1.02107 0.95608 0.97758 1.20827 0.94233 1.06011 0.96612 1.20689 0.93346 0.98628 0.97208 0.88214 0.90626 0.90586 0.89446 0.89381 0.85808 0.84283 0.75843 0.76467 0.91627 0.94109 0.92750 0.90408 0.91682 0.91765 0.89475 0.85567 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.77 10.76 101.05 1.09 0.32 16 2 S -0.26 -2.46 22.36 -107.50 -2.40 -4.86 16 3 C -0.03 -0.30 6.06 36.00 0.22 -0.08 16 4 C -0.11 -1.22 5.14 -104.60 -0.54 -1.75 16 5 C -0.08 -0.97 9.69 -39.61 -0.38 -1.36 16 6 C -0.12 -1.82 8.65 -39.40 -0.34 -2.16 16 7 C 0.19 2.74 6.27 -83.69 -0.52 2.22 16 8 N -0.69 -10.14 5.35 -14.22 -0.08 -10.22 16 9 C 0.70 13.00 8.30 -86.91 -0.72 12.27 16 10 O -0.59 -12.87 14.05 5.29 0.07 -12.80 16 11 N -0.71 -13.52 5.42 -65.22 -0.35 -13.88 16 12 C 0.18 3.99 5.56 -4.04 -0.02 3.96 16 13 C 0.02 0.51 1.62 -155.66 -0.25 0.26 16 14 C -0.50 -12.49 8.12 -34.44 -0.28 -12.77 16 15 H 0.06 1.43 7.82 -52.49 -0.41 1.02 16 16 C 0.07 1.92 5.43 -17.82 -0.10 1.83 16 17 N -0.87 -23.75 12.64 55.43 0.70 -23.05 16 18 Si 0.89 20.12 29.54 -169.99 -5.02 15.09 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 C -0.21 -4.32 9.93 -26.69 -0.27 -4.59 16 23 C -0.14 -3.18 9.16 -26.69 -0.24 -3.42 16 24 C -0.16 -1.85 9.96 -39.39 -0.39 -2.25 16 25 C -0.08 -0.85 9.69 -39.61 -0.38 -1.24 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.09 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.09 0.69 8.08 -51.92 -0.42 0.27 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.14 2.32 6.44 -52.48 -0.34 1.99 16 33 H 0.41 4.67 8.83 -40.82 -0.36 4.31 16 34 H 0.40 6.97 7.99 -40.82 -0.33 6.65 16 35 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.04 0.89 8.09 -51.93 -0.42 0.46 16 37 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 38 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.37 8.14 -51.92 -0.42 0.95 16 41 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 42 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 43 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -29.75 378.01 -11.00 -40.75 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -6.48 Total: 12.02 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -3.14 Total: -8.76 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.27 Total: -47.15 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.07 Total: -12.80 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: -2.46 SS G_CDS: -2.40 Total: -4.86 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.75 -11.00 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432092513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.778 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds