Wall clock time and date at job start Tue Mar 31 2020 12:41:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81400 * 1
3 3 C 1.81402 * 103.00092 * 2 1
4 4 C 1.52997 * 112.85288 * 298.76225 * 3 2 1
5 5 N 1.46493 * 109.47214 * 294.34458 * 4 3 2
6 6 C 1.34779 * 120.00500 * 185.01527 * 5 4 3
7 7 O 1.21587 * 119.99506 * 0.02562 * 6 5 4
8 8 N 1.34773 * 120.00447 * 180.02562 * 6 5 4
9 9 C 1.39959 * 120.00101 * 184.91093 * 8 6 5
10 10 C 1.39278 * 119.94713 * 144.58174 * 9 8 6
11 11 C 1.38487 * 120.42715 * 179.97438 * 10 9 8
12 12 C 1.37684 * 120.32533 * 0.02562 * 11 10 9
13 13 C 1.40744 * 119.88006 * 359.97438 * 12 11 10
14 14 C 1.41401 * 120.21050 * 179.97438 * 13 12 11
15 15 H 1.08002 * 120.00234 * 152.40435 * 14 13 12
16 16 C 1.39939 * 120.00013 * 332.40243 * 14 13 12
17 17 N 1.30828 * 119.99749 * 346.61267 * 16 14 13
18 18 Si 1.86799 * 119.99966 * 166.61651 * 16 14 13
19 19 H 1.48499 * 109.47094 * 359.97438 * 18 16 14
20 20 H 1.48501 * 109.47038 * 120.00058 * 18 16 14
21 21 H 1.48497 * 109.46878 * 239.99789 * 18 16 14
22 22 C 1.38238 * 119.94450 * 324.30595 * 9 8 6
23 23 C 1.53786 * 113.68687 * 70.02968 * 3 2 1
24 24 C 1.53790 * 87.07892 * 139.99035 * 23 3 2
25 25 C 1.53781 * 87.08227 * 334.56650 * 24 23 3
26 26 H 1.08992 * 109.47039 * 185.53637 * 1 2 3
27 27 H 1.08999 * 109.46751 * 305.53258 * 1 2 3
28 28 H 1.08996 * 109.47177 * 65.53050 * 1 2 3
29 29 H 1.08999 * 109.46983 * 174.34288 * 4 3 2
30 30 H 1.09000 * 109.47134 * 54.34248 * 4 3 2
31 31 H 0.97006 * 120.00039 * 5.01836 * 5 4 3
32 32 H 0.96998 * 119.99749 * 4.90514 * 8 6 5
33 33 H 1.07997 * 119.78787 * 359.97438 * 10 9 8
34 34 H 1.08000 * 119.84025 * 180.02562 * 11 10 9
35 35 H 1.07997 * 120.06246 * 179.97438 * 12 11 10
36 36 H 0.97001 * 119.99661 * 180.02562 * 17 16 14
37 37 H 1.08009 * 120.15679 * 0.02562 * 22 9 8
38 38 H 1.08998 * 113.61642 * 254.53512 * 23 3 2
39 39 H 1.09000 * 113.61469 * 25.44797 * 23 3 2
40 40 H 1.08999 * 113.61012 * 220.01721 * 24 23 3
41 41 H 1.09006 * 113.61083 * 89.11704 * 24 23 3
42 42 H 1.08997 * 113.61744 * 270.88337 * 25 24 23
43 43 H 1.09000 * 113.68957 * 139.98726 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2221 1.7675 0.0000
4 6 1.6948 2.4991 -1.2359
5 7 2.3796 1.9972 -2.4297
6 6 2.1495 2.5680 -3.6288
7 8 1.3739 3.5000 -3.7195
8 7 2.7792 2.1059 -4.7271
9 6 2.6202 2.7622 -5.9531
10 6 3.6875 2.8378 -6.8447
11 6 3.5411 3.4843 -8.0607
12 6 2.3378 4.0603 -8.4013
13 6 1.2505 3.9918 -7.5103
14 6 0.0117 4.5815 -7.8527
15 1 -0.9060 4.1869 -7.4423
16 6 -0.0251 5.6763 -8.7235
17 7 1.0771 6.3184 -9.0139
18 14 -1.6480 6.2210 -9.4710
19 1 -2.7377 5.3358 -8.9871
20 1 -1.9325 7.6221 -9.0694
21 1 -1.5638 6.1377 -10.9513
22 6 1.4025 3.3294 -6.2793
23 6 1.8924 2.4777 1.3236
24 6 3.2131 3.2461 1.1492
25 6 3.7014 2.0582 0.3035
26 1 -0.3633 -1.0228 0.0991
27 1 -0.3633 0.5973 0.8363
28 1 -0.3633 0.4256 -0.9353
29 1 1.8812 3.5680 -1.1325
30 1 0.6231 2.3248 -1.3316
31 1 2.9986 1.2538 -2.3573
32 1 3.3425 1.3186 -4.6680
33 1 4.6353 2.3894 -6.5863
34 1 4.3748 3.5369 -8.7451
35 1 2.2285 4.5638 -9.3505
36 1 1.0515 7.0776 -9.6172
37 1 0.5731 3.2677 -5.5902
38 1 1.0078 3.1123 1.2702
39 1 1.8855 1.8118 2.1865
40 1 3.7676 3.3777 2.0784
41 1 3.1083 4.1715 0.5829
42 1 4.1889 1.2775 0.8874
43 1 4.2774 2.3526 -0.5738
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000455905967.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:41:50
Heat of formation + Delta-G solvation = 13.688637 kcal
Electronic energy + Delta-G solvation = -24099.766405 eV
Core-core repulsion = 20657.622656 eV
Total energy + Delta-G solvation = -3442.143749 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.19171 -39.18215 -37.21836 -34.45911 -34.06192 -32.90603 -29.73896 -29.50598
-28.61098 -27.13847 -26.04210 -25.21875 -24.05164 -21.58431 -20.78223 -20.08209
-19.33869 -17.92787 -17.67252 -17.10572 -15.95326 -15.52759 -15.32497 -15.02604
-14.73244 -14.61383 -14.39603 -13.95068 -13.75434 -13.56156 -13.15211 -13.01011
-12.86735 -12.82720 -12.58946 -12.39654 -12.05787 -11.61002 -11.28789 -11.25862
-11.06752 -10.94044 -10.72767 -10.60193 -10.43875 -10.13202 -9.99103 -9.67946
-9.48929 -9.13705 -8.88823 -8.80109 -7.93387 -7.34780 -6.81298 -6.62180
-4.27076 1.42754 2.25074 2.78327 2.90587 3.07341 3.13998 3.20304
3.25277 3.75906 4.02384 4.04967 4.10778 4.25771 4.40144 4.67751
4.74324 4.90225 4.94878 4.99184 5.26290 5.33253 5.39096 5.47825
5.56346 5.57020 5.65692 5.73732 5.78674 5.98243 6.29601 6.45957
6.57421 6.85987 6.86942 7.11570 7.18790 7.31749 7.41826 7.76363
7.90223 8.06198 8.18068 8.32848 8.50847 8.74426 8.97255 9.04937
9.11879 10.32151
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.018266 B = 0.002805 C = 0.002664
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1532.538387 B = 9981.386021 C =10506.880469
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 S -0.248 6.248
3 C -0.070 4.070
4 C 0.167 3.833
5 N -0.744 5.744
6 C 0.698 3.302
7 O -0.566 6.566
8 N -0.680 5.680
9 C 0.165 3.835
10 C -0.260 4.260
11 C -0.094 4.094
12 C -0.171 4.171
13 C 0.118 3.882
14 C -0.458 4.458
15 H 0.076 0.924
16 C 0.074 3.926
17 N -0.800 5.800
18 Si 0.909 3.091
19 H -0.261 1.261
20 H -0.275 1.275
21 H -0.273 1.273
22 C -0.206 4.206
23 C -0.120 4.120
24 C -0.136 4.136
25 C -0.107 4.107
26 H 0.099 0.901
27 H 0.077 0.923
28 H 0.079 0.921
29 H 0.080 0.920
30 H 0.064 0.936
31 H 0.396 0.604
32 H 0.394 0.606
33 H 0.088 0.912
34 H 0.091 0.909
35 H 0.119 0.881
36 H 0.278 0.722
37 H 0.112 0.888
38 H 0.076 0.924
39 H 0.096 0.904
40 H 0.076 0.924
41 H 0.088 0.912
42 H 0.092 0.908
43 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.274 -9.385 18.221 20.756
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.290 4.290
2 S -0.018 6.018
3 C -0.181 4.181
4 C 0.040 3.960
5 N -0.402 5.402
6 C 0.398 3.602
7 O -0.441 6.441
8 N -0.327 5.327
9 C 0.073 3.927
10 C -0.282 4.282
11 C -0.113 4.113
12 C -0.190 4.190
13 C 0.115 3.885
14 C -0.488 4.488
15 H 0.094 0.906
16 C -0.142 4.142
17 N -0.426 5.426
18 Si 0.734 3.266
19 H -0.185 1.185
20 H -0.201 1.201
21 H -0.198 1.198
22 C -0.228 4.228
23 C -0.160 4.160
24 C -0.175 4.175
25 C -0.146 4.146
26 H 0.117 0.883
27 H 0.096 0.904
28 H 0.098 0.902
29 H 0.098 0.902
30 H 0.083 0.917
31 H 0.230 0.770
32 H 0.227 0.773
33 H 0.106 0.894
34 H 0.109 0.891
35 H 0.137 0.863
36 H 0.089 0.911
37 H 0.130 0.870
38 H 0.094 0.906
39 H 0.115 0.885
40 H 0.095 0.905
41 H 0.106 0.894
42 H 0.111 0.889
43 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 3.277 -9.228 18.029 20.517
hybrid contribution -0.916 0.573 -0.293 1.120
sum 2.361 -8.655 17.736 19.876
Atomic orbital electron populations
1.23372 0.94054 1.06265 1.05331 1.86668 1.07823 1.09773 1.97576
1.24563 1.01700 0.93514 0.98280 1.20902 0.96109 0.97871 0.81132
1.44988 1.50247 1.39046 1.05933 1.15949 0.81647 0.82489 0.80087
1.90987 1.38225 1.30185 1.84718 1.42529 1.51398 1.31567 1.07180
1.17243 0.94482 0.97814 0.83191 1.20034 0.96338 1.13563 0.98246
1.20448 0.97016 0.98452 0.95378 1.21354 0.93251 1.03711 1.00718
1.17524 0.93237 0.88698 0.89028 1.19572 0.93921 1.11872 1.23436
0.90553 1.25876 0.97931 0.95626 0.94809 1.69829 1.28633 1.15961
1.28189 0.86253 0.82361 0.78897 0.79122 1.18495 1.20066 1.19839
1.21141 0.95629 1.08616 0.97417 1.23183 0.98946 0.98843 0.94986
1.22848 0.96611 0.97480 1.00587 1.22799 0.92449 0.98439 1.00922
0.88263 0.90384 0.90196 0.90237 0.91743 0.76962 0.77252 0.89391
0.89094 0.86344 0.91146 0.86965 0.90576 0.88534 0.90541 0.89387
0.88937 0.90073
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.99 10.34 101.05 1.04 0.06 16
2 S -0.25 -2.32 21.46 -107.50 -2.31 -4.63 16
3 C -0.07 -0.62 0.74 -89.80 -0.07 -0.69 16
4 C 0.17 1.98 4.85 -4.05 -0.02 1.96 16
5 N -0.74 -9.93 5.18 -65.23 -0.34 -10.27 16
6 C 0.70 13.04 8.40 -86.92 -0.73 12.31 16
7 O -0.57 -13.37 13.79 5.29 0.07 -13.30 16
8 N -0.68 -12.56 5.34 -14.27 -0.08 -12.63 16
9 C 0.16 3.83 6.28 -83.76 -0.53 3.31 16
10 C -0.26 -5.84 9.97 -39.10 -0.39 -6.23 16
11 C -0.09 -2.24 10.02 -39.69 -0.40 -2.63 16
12 C -0.17 -4.57 8.67 -38.84 -0.34 -4.90 16
13 C 0.12 3.32 5.55 -106.85 -0.59 2.73 16
14 C -0.46 -12.87 9.06 -37.74 -0.34 -13.21 16
15 H 0.08 2.10 7.88 -52.49 -0.41 1.68 16
16 C 0.07 1.95 5.21 -17.34 -0.09 1.86 16
17 N -0.80 -21.57 10.90 55.55 0.61 -20.96 16
18 Si 0.91 19.57 29.58 -169.99 -5.03 14.54 16
19 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16
20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16
21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16
22 C -0.21 -5.51 8.43 -38.69 -0.33 -5.83 16
23 C -0.12 -0.86 7.26 -25.91 -0.19 -1.05 16
24 C -0.14 -0.97 7.73 -25.91 -0.20 -1.17 16
25 C -0.11 -0.84 7.14 -25.92 -0.18 -1.03 16
26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16
27 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16
28 H 0.08 0.74 7.43 -51.93 -0.39 0.35 16
29 H 0.08 1.02 7.30 -51.93 -0.38 0.65 16
30 H 0.06 0.83 7.07 -51.93 -0.37 0.46 16
31 H 0.40 4.38 8.26 -40.82 -0.34 4.04 16
32 H 0.39 5.66 8.84 -40.82 -0.36 5.30 16
33 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16
34 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16
35 H 0.12 3.25 6.22 -52.49 -0.33 2.93 16
36 H 0.28 6.78 8.30 -40.82 -0.34 6.45 16
37 H 0.11 3.12 6.24 -52.48 -0.33 2.79 16
38 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16
39 H 0.10 0.63 8.10 -51.93 -0.42 0.21 16
40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
41 H 0.09 0.69 7.61 -51.93 -0.40 0.29 16
42 H 0.09 0.68 8.10 -51.93 -0.42 0.25 16
43 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16
LS Contribution 365.14 15.07 5.50 5.50
Total: -1.00 -32.05 365.14 -11.13 -43.18
By element:
Atomic # 1 Polarization: 19.30 SS G_CDS: -6.21 Total: 13.09 kcal
Atomic # 6 Polarization: -11.18 SS G_CDS: -3.35 Total: -14.53 kcal
Atomic # 7 Polarization: -44.05 SS G_CDS: 0.19 Total: -43.86 kcal
Atomic # 8 Polarization: -13.37 SS G_CDS: 0.07 Total: -13.30 kcal
Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal
Atomic # 16 Polarization: -2.32 SS G_CDS: -2.31 Total: -4.63 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -32.05 -11.13 -43.18 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000455905967.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.873 kcal
(2) G-P(sol) polarization free energy of solvation -32.055 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.819 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.130 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.689 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds