Wall clock time and date at job start Tue Mar 31 2020 12:41:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81400 * 1
3 3 C 1.81402 * 103.00092 * 2 1
4 4 C 1.52997 * 112.85288 * 298.76225 * 3 2 1
5 5 N 1.46493 * 109.47214 * 294.34458 * 4 3 2
6 6 C 1.34779 * 120.00500 * 185.01527 * 5 4 3
7 7 O 1.21587 * 119.99506 * 0.02562 * 6 5 4
8 8 N 1.34773 * 120.00447 * 180.02562 * 6 5 4
9 9 C 1.39959 * 120.00101 * 184.91093 * 8 6 5
10 10 C 1.39278 * 119.94713 * 144.58174 * 9 8 6
11 11 C 1.38487 * 120.42715 * 179.97438 * 10 9 8
12 12 C 1.37684 * 120.32533 * 0.02562 * 11 10 9
13 13 C 1.40744 * 119.88006 * 359.97438 * 12 11 10
14 14 C 1.41401 * 120.21050 * 179.97438 * 13 12 11
15 15 H 1.08002 * 120.00234 * 152.40435 * 14 13 12
16 16 C 1.39939 * 120.00013 * 332.40243 * 14 13 12
17 17 N 1.30828 * 119.99749 * 346.61267 * 16 14 13
18 18 Si 1.86799 * 119.99966 * 166.61651 * 16 14 13
19 19 H 1.48499 * 109.47094 * 359.97438 * 18 16 14
20 20 H 1.48501 * 109.47038 * 120.00058 * 18 16 14
21 21 H 1.48497 * 109.46878 * 239.99789 * 18 16 14
22 22 C 1.38238 * 119.94450 * 324.30595 * 9 8 6
23 23 C 1.53786 * 113.68687 * 70.02968 * 3 2 1
24 24 C 1.53790 * 87.07892 * 139.99035 * 23 3 2
25 25 C 1.53781 * 87.08227 * 334.56650 * 24 23 3
26 26 H 1.08992 * 109.47039 * 185.53637 * 1 2 3
27 27 H 1.08999 * 109.46751 * 305.53258 * 1 2 3
28 28 H 1.08996 * 109.47177 * 65.53050 * 1 2 3
29 29 H 1.08999 * 109.46983 * 174.34288 * 4 3 2
30 30 H 1.09000 * 109.47134 * 54.34248 * 4 3 2
31 31 H 0.97006 * 120.00039 * 5.01836 * 5 4 3
32 32 H 0.96998 * 119.99749 * 4.90514 * 8 6 5
33 33 H 1.07997 * 119.78787 * 359.97438 * 10 9 8
34 34 H 1.08000 * 119.84025 * 180.02562 * 11 10 9
35 35 H 1.07997 * 120.06246 * 179.97438 * 12 11 10
36 36 H 0.97001 * 119.99661 * 180.02562 * 17 16 14
37 37 H 1.08009 * 120.15679 * 0.02562 * 22 9 8
38 38 H 1.08998 * 113.61642 * 254.53512 * 23 3 2
39 39 H 1.09000 * 113.61469 * 25.44797 * 23 3 2
40 40 H 1.08999 * 113.61012 * 220.01721 * 24 23 3
41 41 H 1.09006 * 113.61083 * 89.11704 * 24 23 3
42 42 H 1.08997 * 113.61744 * 270.88337 * 25 24 23
43 43 H 1.09000 * 113.68957 * 139.98726 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2221 1.7675 0.0000
4 6 1.6948 2.4991 -1.2359
5 7 2.3796 1.9972 -2.4297
6 6 2.1495 2.5680 -3.6288
7 8 1.3739 3.5000 -3.7195
8 7 2.7792 2.1059 -4.7271
9 6 2.6202 2.7622 -5.9531
10 6 3.6875 2.8378 -6.8447
11 6 3.5411 3.4843 -8.0607
12 6 2.3378 4.0603 -8.4013
13 6 1.2505 3.9918 -7.5103
14 6 0.0117 4.5815 -7.8527
15 1 -0.9060 4.1869 -7.4423
16 6 -0.0251 5.6763 -8.7235
17 7 1.0771 6.3184 -9.0139
18 14 -1.6480 6.2210 -9.4710
19 1 -2.7377 5.3358 -8.9871
20 1 -1.9325 7.6221 -9.0694
21 1 -1.5638 6.1377 -10.9513
22 6 1.4025 3.3294 -6.2793
23 6 1.8924 2.4777 1.3236
24 6 3.2131 3.2461 1.1492
25 6 3.7014 2.0582 0.3035
26 1 -0.3633 -1.0228 0.0991
27 1 -0.3633 0.5973 0.8363
28 1 -0.3633 0.4256 -0.9353
29 1 1.8812 3.5680 -1.1325
30 1 0.6231 2.3248 -1.3316
31 1 2.9986 1.2538 -2.3573
32 1 3.3425 1.3186 -4.6680
33 1 4.6353 2.3894 -6.5863
34 1 4.3748 3.5369 -8.7451
35 1 2.2285 4.5638 -9.3505
36 1 1.0515 7.0776 -9.6172
37 1 0.5731 3.2677 -5.5902
38 1 1.0078 3.1123 1.2702
39 1 1.8855 1.8118 2.1865
40 1 3.7676 3.3777 2.0784
41 1 3.1083 4.1715 0.5829
42 1 4.1889 1.2775 0.8874
43 1 4.2774 2.3526 -0.5738
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000455905967.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:41:49
Heat of formation + Delta-G solvation = -5.430450 kcal
Electronic energy + Delta-G solvation = -24100.595471 eV
Core-core repulsion = 20657.622656 eV
Total energy + Delta-G solvation = -3442.972815 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.55800 -40.18862 -39.00492 -36.21299 -35.45816 -34.73979 -31.72304 -30.53433
-29.81583 -28.39456 -27.22132 -26.66615 -24.93113 -23.26296 -22.68629 -21.68614
-20.21687 -19.58090 -19.13077 -18.07072 -17.44650 -17.08144 -16.57117 -16.42005
-16.24828 -15.97293 -15.70745 -15.18765 -14.85285 -14.68956 -14.55688 -14.30454
-14.03757 -13.90922 -13.69327 -13.50998 -13.26211 -13.12281 -13.10569 -12.83157
-12.55586 -12.20429 -12.01826 -11.92573 -11.58869 -11.56187 -11.38211 -11.30858
-11.02367 -10.72895 -10.66385 -10.17033 -9.34552 -8.69633 -8.67085 -8.57977
-6.36180 0.71383 0.93887 1.04491 1.36077 1.48535 1.51843 1.53184
1.64837 2.16264 2.22888 2.76424 3.17287 3.39871 3.41357 3.57812
3.75633 3.80951 4.26142 4.30019 4.35271 4.35809 4.49050 4.53680
4.66036 4.76306 4.77797 4.87637 4.96831 5.02222 5.06332 5.08310
5.12908 5.15136 5.20378 5.33731 5.37900 5.40714 5.72634 5.85075
6.06981 6.13409 6.17986 6.39095 6.71214 6.96428 7.02674 7.07853
7.58573 8.37934
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.018266 B = 0.002805 C = 0.002664
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1532.538387 B = 9981.386021 C =10506.880469
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 S -0.261 6.261
3 C -0.067 4.067
4 C 0.166 3.834
5 N -0.718 5.718
6 C 0.696 3.304
7 O -0.618 6.618
8 N -0.669 5.669
9 C 0.172 3.828
10 C -0.247 4.247
11 C -0.092 4.092
12 C -0.195 4.195
13 C 0.088 3.912
14 C -0.503 4.503
15 H 0.063 0.937
16 C 0.033 3.967
17 N -0.830 5.830
18 Si 0.985 3.015
19 H -0.263 1.263
20 H -0.266 1.266
21 H -0.257 1.257
22 C -0.234 4.234
23 C -0.112 4.112
24 C -0.133 4.133
25 C -0.104 4.104
26 H 0.110 0.890
27 H 0.090 0.910
28 H 0.064 0.936
29 H 0.069 0.931
30 H 0.053 0.947
31 H 0.411 0.589
32 H 0.418 0.582
33 H 0.132 0.868
34 H 0.124 0.876
35 H 0.104 0.896
36 H 0.287 0.713
37 H 0.088 0.912
38 H 0.075 0.925
39 H 0.110 0.890
40 H 0.094 0.906
41 H 0.077 0.923
42 H 0.104 0.896
43 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.648 -10.404 19.435 22.529
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.288 4.288
2 S -0.032 6.032
3 C -0.177 4.177
4 C 0.039 3.961
5 N -0.376 5.376
6 C 0.396 3.604
7 O -0.498 6.498
8 N -0.317 5.317
9 C 0.078 3.922
10 C -0.268 4.268
11 C -0.111 4.111
12 C -0.215 4.215
13 C 0.085 3.915
14 C -0.533 4.533
15 H 0.081 0.919
16 C -0.180 4.180
17 N -0.457 5.457
18 Si 0.805 3.195
19 H -0.187 1.187
20 H -0.191 1.191
21 H -0.181 1.181
22 C -0.256 4.256
23 C -0.152 4.152
24 C -0.172 4.172
25 C -0.142 4.142
26 H 0.129 0.871
27 H 0.109 0.891
28 H 0.083 0.917
29 H 0.087 0.913
30 H 0.071 0.929
31 H 0.248 0.752
32 H 0.255 0.745
33 H 0.150 0.850
34 H 0.142 0.858
35 H 0.122 0.878
36 H 0.098 0.902
37 H 0.106 0.894
38 H 0.094 0.906
39 H 0.129 0.871
40 H 0.112 0.888
41 H 0.096 0.904
42 H 0.123 0.877
43 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 4.707 -10.317 19.295 22.381
hybrid contribution -1.240 0.791 -0.549 1.570
sum 3.467 -9.526 18.746 21.311
Atomic orbital electron populations
1.23408 0.93118 1.07195 1.05066 1.86706 1.08944 1.09986 1.97550
1.24503 1.02705 0.93008 0.97466 1.20982 0.95584 0.97823 0.81692
1.44764 1.49673 1.38501 1.04637 1.16142 0.80953 0.82100 0.81206
1.90968 1.40479 1.32698 1.85609 1.42275 1.51647 1.32044 1.05727
1.17300 0.93429 0.96644 0.84788 1.20462 0.97475 1.11849 0.97009
1.20831 0.96716 0.97070 0.96437 1.21323 0.94459 1.05423 1.00336
1.17852 0.94049 0.89592 0.89985 1.19768 0.93785 1.13793 1.25940
0.91857 1.26725 1.01954 0.94889 0.94459 1.69870 1.30699 1.16461
1.28649 0.85137 0.77206 0.78443 0.78716 1.18696 1.19065 1.18145
1.21082 0.96711 1.10752 0.97013 1.23202 0.99099 0.98723 0.94179
1.22830 0.96606 0.96711 1.01080 1.22831 0.91433 0.99048 1.00933
0.87097 0.89098 0.91708 0.91294 0.92870 0.75150 0.74489 0.84970
0.85794 0.87804 0.90213 0.89366 0.90584 0.87143 0.88783 0.90424
0.87726 0.90810
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.79 10.34 113.37 1.17 -0.62 16
2 S -0.26 -4.44 21.46 -56.49 -1.21 -5.65 16
3 C -0.07 -1.07 0.74 -10.26 -0.01 -1.08 16
4 C 0.17 3.89 4.85 86.38 0.42 4.31 16
5 N -0.72 -18.62 5.18 -478.56 -2.48 -21.10 16
6 C 0.70 26.03 8.40 179.05 1.50 27.53 16
7 O -0.62 -30.35 13.79 -3.99 -0.06 -30.40 16
8 N -0.67 -23.91 5.34 -317.33 -1.69 -25.60 16
9 C 0.17 7.95 6.28 38.09 0.24 8.19 16
10 C -0.25 -10.49 9.97 22.58 0.23 -10.26 16
11 C -0.09 -4.25 10.02 22.20 0.22 -4.03 16
12 C -0.20 -10.72 8.67 22.75 0.20 -10.53 16
13 C 0.09 5.18 5.55 -21.31 -0.12 5.06 16
14 C -0.50 -29.90 9.06 23.46 0.21 -29.68 16
15 H 0.06 3.75 7.88 -2.91 -0.02 3.72 16
16 C 0.03 1.81 5.21 85.25 0.44 2.25 16
17 N -0.83 -46.01 10.90 21.83 0.24 -45.77 16
18 Si 0.98 41.16 29.58 68.60 2.03 43.19 16
19 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16
20 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16
21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16
22 C -0.23 -13.00 8.43 22.85 0.19 -12.80 16
23 C -0.11 -1.40 7.26 31.13 0.23 -1.17 16
24 C -0.13 -1.63 7.73 31.12 0.24 -1.39 16
25 C -0.10 -1.41 7.14 31.12 0.22 -1.19 16
26 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16
27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16
28 H 0.06 1.18 7.43 -2.39 -0.02 1.16 16
29 H 0.07 1.80 7.30 -2.39 -0.02 1.78 16
30 H 0.05 1.39 7.07 -2.39 -0.02 1.37 16
31 H 0.41 8.32 8.26 -92.70 -0.77 7.56 16
32 H 0.42 10.88 8.84 -92.71 -0.82 10.06 16
33 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16
34 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16
35 H 0.10 5.91 6.22 -2.91 -0.02 5.89 16
36 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16
37 H 0.09 5.25 6.24 -2.91 -0.02 5.23 16
38 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16
39 H 0.11 1.13 8.10 -2.39 -0.02 1.11 16
40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16
41 H 0.08 1.13 7.61 -2.38 -0.02 1.11 16
42 H 0.10 1.23 8.10 -2.39 -0.02 1.21 16
43 H 0.07 1.13 7.93 -2.39 -0.02 1.11 16
Total: -1.00 -73.55 365.14 1.67 -71.88
By element:
Atomic # 1 Polarization: 39.42 SS G_CDS: -0.54 Total: 38.88 kcal
Atomic # 6 Polarization: -30.81 SS G_CDS: 5.39 Total: -25.42 kcal
Atomic # 7 Polarization: -88.53 SS G_CDS: -3.94 Total: -92.47 kcal
Atomic # 8 Polarization: -30.35 SS G_CDS: -0.06 Total: -30.40 kcal
Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal
Atomic # 16 Polarization: -4.44 SS G_CDS: -1.21 Total: -5.65 kcal
Total: -73.55 1.67 -71.88 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000455905967.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.451 kcal
(2) G-P(sol) polarization free energy of solvation -73.554 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.103 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.882 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.430 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds