Wall clock time and date at job start Tue Mar 31 2020 12:32:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35902 * 116.99724 * 2 1
4 4 C 1.38831 * 120.01422 * 0.02562 * 3 2 1
5 5 C 1.38193 * 120.10115 * 179.97438 * 4 3 2
6 6 C 1.38132 * 120.13644 * 359.72599 * 5 4 3
7 7 C 1.38992 * 120.02898 * 0.54656 * 6 5 4
8 8 S 1.76204 * 120.05307 * 179.72210 * 7 6 5
9 9 C 1.81395 * 102.99778 * 359.73205 * 8 7 6
10 10 C 1.53008 * 109.47112 * 180.02562 * 9 8 7
11 11 N 1.46897 * 109.47013 * 174.87286 * 10 9 8
12 12 C 1.46897 * 111.00094 * 75.68740 * 11 10 9
13 13 C 1.50700 * 109.47371 * 189.99675 * 12 11 10
14 14 H 1.08006 * 119.99832 * 359.97438 * 13 12 11
15 15 C 1.37872 * 120.00463 * 179.97438 * 13 12 11
16 16 N 1.31518 * 120.00123 * 179.97438 * 15 13 12
17 17 Si 1.86801 * 119.99950 * 0.02562 * 15 13 12
18 18 H 1.48502 * 109.47247 * 89.99965 * 17 15 13
19 19 H 1.48503 * 109.47261 * 209.99841 * 17 15 13
20 20 H 1.48502 * 109.46849 * 330.00038 * 17 15 13
21 21 C 1.46898 * 110.99513 * 199.63738 * 11 10 9
22 22 C 1.53008 * 109.47141 * 75.79864 * 21 11 10
23 23 C 1.47196 * 109.47233 * 174.87295 * 22 21 11
24 24 N 9.43249 * 146.68055 * 34.94200 * 6 1 2
25 25 C 1.38552 * 120.01579 * 180.02562 * 3 2 1
26 26 H 1.08994 * 109.47365 * 300.00318 * 1 2 3
27 27 H 1.08997 * 109.46906 * 60.00203 * 1 2 3
28 28 H 1.08995 * 109.46679 * 179.97438 * 1 2 3
29 29 H 1.08002 * 119.94940 * 359.95470 * 4 3 2
30 30 H 1.08001 * 119.92835 * 179.97438 * 5 4 3
31 31 H 1.08002 * 119.98418 * 180.27884 * 6 5 4
32 32 H 1.09004 * 109.47658 * 299.99552 * 9 8 7
33 33 H 1.09002 * 109.47657 * 59.99862 * 9 8 7
34 34 H 1.09004 * 109.46411 * 294.87092 * 10 9 8
35 35 H 1.09000 * 109.47177 * 54.87021 * 10 9 8
36 36 H 1.09002 * 109.47577 * 309.99835 * 12 11 10
37 37 H 1.09002 * 109.47480 * 69.99765 * 12 11 10
38 38 H 0.97003 * 119.99543 * 179.97438 * 16 15 13
39 39 H 1.09001 * 109.47216 * 195.79631 * 21 11 10
40 40 H 1.08994 * 109.47541 * 315.79608 * 21 11 10
41 41 H 1.08993 * 109.46571 * 294.87157 * 22 21 11
42 42 H 1.08999 * 109.46870 * 54.86741 * 22 21 11
43 43 H 1.07999 * 120.06688 * 0.03955 * 25 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2109 0.0000
4 6 1.2901 2.3754 0.0005
5 6 1.9155 3.6077 0.0011
6 6 3.2946 3.6854 0.0068
7 6 4.0568 2.5232 0.0005
8 16 5.8161 2.6217 0.0004
9 6 6.1247 4.4092 0.0013
10 6 7.6330 4.6664 0.0006
11 7 7.8837 6.1085 -0.1225
12 6 7.6203 6.7989 1.1471
13 6 7.6478 8.2890 0.9237
14 1 7.8420 8.6838 -0.0627
15 6 7.4250 9.1485 1.9785
16 7 7.4495 10.4490 1.7836
17 14 7.0899 8.4659 3.6847
18 1 8.3735 8.3017 4.4132
19 1 6.2143 9.4053 4.4305
20 1 6.4154 7.1482 3.5670
21 6 9.2528 6.3669 -0.5880
22 6 9.3461 6.0723 -2.0866
23 6 10.6820 6.4473 -2.5781
24 7 11.7142 6.7365 -2.9552
25 6 3.4295 1.2839 -0.0005
26 1 -0.3634 0.5138 0.8899
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3632 -1.0276 -0.0005
29 1 0.2116 2.3182 0.0002
30 1 1.3247 4.5118 0.0011
31 1 3.7809 4.6498 0.0117
32 1 5.6802 4.8551 -0.8885
33 1 5.6802 4.8543 0.8915
34 1 8.0642 4.3008 0.9326
35 1 8.0901 4.1450 -0.8404
36 1 6.6402 6.5060 1.5235
37 1 8.3851 6.5265 1.8744
38 1 7.2924 11.0536 2.5257
39 1 9.5074 7.4111 -0.4065
40 1 9.9478 5.7243 -0.0475
41 1 9.1810 5.0088 -2.2587
42 1 8.5885 6.6483 -2.6179
43 1 4.0191 0.3790 -0.0016
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000595395685.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:32:54
Heat of formation + Delta-G solvation = 18.742638 kcal
Electronic energy + Delta-G solvation = -23142.465676 eV
Core-core repulsion = 19700.541085 eV
Total energy + Delta-G solvation = -3441.924591 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-40.22862 -37.85795 -37.53341 -36.21027 -32.75768 -32.09092 -31.32453 -30.57893
-29.94849 -27.58424 -27.08243 -23.76940 -22.97968 -22.43415 -22.24409 -20.03012
-18.70525 -17.32481 -17.04552 -16.58946 -16.23112 -16.10742 -16.01244 -15.28965
-15.10932 -14.82332 -14.21585 -14.10409 -13.99639 -13.81055 -13.51737 -13.14730
-13.03656 -12.79377 -12.57515 -12.40285 -12.17591 -12.10145 -11.77465 -11.65966
-11.51201 -11.29834 -11.19945 -11.11367 -10.83893 -10.61995 -10.31241 -10.06174
-9.94248 -9.79292 -9.39920 -8.68440 -8.51176 -7.73713 -7.46064 -6.15590
-4.14522 1.01600 1.25366 1.41204 2.39957 2.95199 3.00479 3.05151
3.20895 3.29014 3.30345 3.51411 4.11758 4.32282 4.56700 4.74942
4.79378 4.81956 4.82696 4.98727 5.04804 5.11217 5.13514 5.19194
5.20094 5.29388 5.35030 5.47258 5.62611 5.69467 5.75413 5.84559
5.99029 6.03902 6.12712 6.17959 6.25953 6.39531 6.40742 6.68351
6.75509 7.13855 7.41153 7.62806 7.75375 7.80375 8.49393 8.92038
9.45189 10.97034
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.010852 B = 0.003103 C = 0.002553
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2579.634406 B = 9021.369094 C =10965.234269
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.318 6.318
3 C 0.140 3.860
4 C -0.218 4.218
5 C -0.059 4.059
6 C -0.167 4.167
7 C -0.039 4.039
8 S -0.114 6.114
9 C -0.098 4.098
10 C 0.065 3.935
11 N -0.521 5.521
12 C 0.161 3.839
13 C -0.515 4.515
14 H 0.084 0.916
15 C 0.072 3.928
16 N -0.896 5.896
17 Si 0.871 3.129
18 H -0.277 1.277
19 H -0.285 1.285
20 H -0.267 1.267
21 C 0.064 3.936
22 C -0.026 4.026
23 C 0.218 3.782
24 N -0.453 5.453
25 C -0.138 4.138
26 H 0.055 0.945
27 H 0.056 0.944
28 H 0.099 0.901
29 H 0.128 0.872
30 H 0.129 0.871
31 H 0.133 0.867
32 H 0.101 0.899
33 H 0.092 0.908
34 H 0.041 0.959
35 H 0.077 0.923
36 H 0.032 0.968
37 H -0.012 1.012
38 H 0.265 0.735
39 H 0.104 0.896
40 H 0.034 0.966
41 H 0.100 0.900
42 H 0.118 0.882
43 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.654 -19.155 -3.728 23.258
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.231 6.231
3 C 0.093 3.907
4 C -0.239 4.239
5 C -0.079 4.079
6 C -0.191 4.191
7 C -0.152 4.152
8 S 0.130 5.870
9 C -0.247 4.247
10 C -0.065 4.065
11 N -0.245 5.245
12 C 0.035 3.965
13 C -0.553 4.553
14 H 0.102 0.898
15 C -0.131 4.131
16 N -0.534 5.534
17 Si 0.699 3.301
18 H -0.203 1.203
19 H -0.211 1.211
20 H -0.191 1.191
21 C -0.065 4.065
22 C -0.067 4.067
23 C -0.100 4.100
24 N -0.131 5.131
25 C -0.163 4.163
26 H 0.074 0.926
27 H 0.074 0.926
28 H 0.117 0.883
29 H 0.146 0.854
30 H 0.147 0.853
31 H 0.151 0.849
32 H 0.120 0.880
33 H 0.111 0.889
34 H 0.059 0.941
35 H 0.095 0.905
36 H 0.050 0.950
37 H 0.006 0.994
38 H 0.075 0.925
39 H 0.122 0.878
40 H 0.052 0.948
41 H 0.118 0.882
42 H 0.136 0.864
43 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -10.415 -19.365 -4.540 22.452
hybrid contribution -1.433 0.542 1.817 2.377
sum -11.847 -18.823 -2.723 22.407
Atomic orbital electron populations
1.23055 0.78339 1.03885 1.01448 1.86064 1.21401 1.26896 1.88749
1.18792 0.91775 0.84170 0.95923 1.21226 0.99959 0.92332 1.10372
1.20875 0.94104 0.97151 0.95773 1.21264 0.94408 0.97616 1.05790
1.21491 0.97210 0.95377 1.01151 1.85316 0.98784 1.11312 1.91540
1.23776 1.01739 0.92111 1.07028 1.21785 0.92259 0.91344 1.01117
1.61819 1.23721 1.05849 1.33144 1.20269 0.95604 0.95565 0.85057
1.20989 1.48977 0.87805 0.97572 0.89843 1.24883 0.94855 0.94721
0.98633 1.69885 1.49588 1.01875 1.32062 0.86928 0.78752 0.79307
0.85146 1.20258 1.21096 1.19135 1.21936 0.89553 1.04068 0.90985
1.19382 0.85970 1.03204 0.98097 1.29304 0.94884 0.92807 0.92992
1.81190 1.12464 1.09603 1.09798 1.19862 0.91323 0.96898 1.08174
0.92589 0.92585 0.88271 0.85438 0.85287 0.84920 0.88023 0.88928
0.94107 0.90466 0.94979 0.99383 0.92524 0.87811 0.94772 0.88198
0.86360 0.84821
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.17 9.81 101.05 0.99 1.16 16
2 O -0.32 -3.25 10.49 -19.43 -0.20 -3.45 16
3 C 0.14 1.58 6.68 -39.25 -0.26 1.32 16
4 C -0.22 -2.18 9.04 -39.38 -0.36 -2.54 16
5 C -0.06 -0.63 10.03 -39.64 -0.40 -1.02 16
6 C -0.17 -2.02 9.36 -39.34 -0.37 -2.39 16
7 C -0.04 -0.49 6.11 -39.06 -0.24 -0.73 16
8 S -0.11 -1.41 21.92 -107.50 -2.36 -3.76 16
9 C -0.10 -1.28 4.36 37.16 0.16 -1.12 16
10 C 0.06 0.88 4.81 -3.82 -0.02 0.86 16
11 N -0.52 -8.69 4.36 -236.07 -1.03 -9.72 16
12 C 0.16 3.38 3.62 -4.98 -0.02 3.37 16
13 C -0.52 -13.20 8.79 -34.44 -0.30 -13.50 16
14 H 0.08 2.32 7.56 -52.48 -0.40 1.92 16
15 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16
16 N -0.90 -26.08 13.96 55.43 0.77 -25.31 16
17 Si 0.87 20.25 27.47 -169.99 -4.67 15.58 16
18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
20 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16
21 C 0.06 0.98 4.75 -3.82 -0.02 0.97 16
22 C -0.03 -0.31 5.75 -29.52 -0.17 -0.48 16
23 C 0.22 3.11 15.43 -20.75 -0.32 2.79 16
24 N -0.45 -7.69 18.54 42.17 0.78 -6.90 16
25 C -0.14 -1.66 9.73 -39.22 -0.38 -2.05 16
26 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16
27 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16
28 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16
29 H 0.13 0.95 6.29 -52.49 -0.33 0.62 16
30 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16
31 H 0.13 1.60 5.87 -52.49 -0.31 1.29 16
32 H 0.10 1.29 7.76 -51.92 -0.40 0.89 16
33 H 0.09 1.33 6.55 -51.92 -0.34 0.99 16
34 H 0.04 0.57 8.00 -51.93 -0.42 0.16 16
35 H 0.08 0.87 6.56 -51.93 -0.34 0.53 16
36 H 0.03 0.68 5.77 -51.93 -0.30 0.38 16
37 H -0.01 -0.25 7.55 -51.93 -0.39 -0.64 16
38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16
39 H 0.10 1.91 6.57 -51.93 -0.34 1.57 16
40 H 0.03 0.49 8.00 -51.93 -0.42 0.08 16
41 H 0.10 0.92 6.89 -51.93 -0.36 0.56 16
42 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16
43 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16
LS Contribution 370.63 15.07 5.59 5.59
Total: -1.00 -30.66 370.63 -8.91 -39.56
By element:
Atomic # 1 Polarization: 5.93 SS G_CDS: -5.99 Total: -0.06 kcal
Atomic # 6 Polarization: -9.73 SS G_CDS: -1.80 Total: -11.52 kcal
Atomic # 7 Polarization: -42.46 SS G_CDS: 0.53 Total: -41.93 kcal
Atomic # 8 Polarization: -3.25 SS G_CDS: -0.20 Total: -3.45 kcal
Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal
Atomic # 16 Polarization: -1.41 SS G_CDS: -2.36 Total: -3.76 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -30.66 -8.91 -39.56 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595395685.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.304 kcal
(2) G-P(sol) polarization free energy of solvation -30.655 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.649 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.743 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds