Wall clock time and date at job start Tue Mar 31 2020 12:32:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35902 * 116.99724 * 2 1
4 4 C 1.38831 * 120.01422 * 0.02562 * 3 2 1
5 5 C 1.38193 * 120.10115 * 179.97438 * 4 3 2
6 6 C 1.38132 * 120.13644 * 359.72599 * 5 4 3
7 7 C 1.38992 * 120.02898 * 0.54656 * 6 5 4
8 8 S 1.76204 * 120.05307 * 179.72210 * 7 6 5
9 9 C 1.81395 * 102.99778 * 359.73205 * 8 7 6
10 10 C 1.53008 * 109.47112 * 180.02562 * 9 8 7
11 11 N 1.46897 * 109.47013 * 174.87286 * 10 9 8
12 12 C 1.46897 * 111.00094 * 75.68740 * 11 10 9
13 13 C 1.50700 * 109.47371 * 189.99675 * 12 11 10
14 14 H 1.08006 * 119.99832 * 359.97438 * 13 12 11
15 15 C 1.37872 * 120.00463 * 179.97438 * 13 12 11
16 16 N 1.31518 * 120.00123 * 179.97438 * 15 13 12
17 17 Si 1.86801 * 119.99950 * 0.02562 * 15 13 12
18 18 H 1.48502 * 109.47247 * 89.99965 * 17 15 13
19 19 H 1.48503 * 109.47261 * 209.99841 * 17 15 13
20 20 H 1.48502 * 109.46849 * 330.00038 * 17 15 13
21 21 C 1.46898 * 110.99513 * 199.63738 * 11 10 9
22 22 C 1.53008 * 109.47141 * 75.79864 * 21 11 10
23 23 C 1.47196 * 109.47233 * 174.87295 * 22 21 11
24 24 N 9.43249 * 146.68055 * 34.94200 * 6 1 2
25 25 C 1.38552 * 120.01579 * 180.02562 * 3 2 1
26 26 H 1.08994 * 109.47365 * 300.00318 * 1 2 3
27 27 H 1.08997 * 109.46906 * 60.00203 * 1 2 3
28 28 H 1.08995 * 109.46679 * 179.97438 * 1 2 3
29 29 H 1.08002 * 119.94940 * 359.95470 * 4 3 2
30 30 H 1.08001 * 119.92835 * 179.97438 * 5 4 3
31 31 H 1.08002 * 119.98418 * 180.27884 * 6 5 4
32 32 H 1.09004 * 109.47658 * 299.99552 * 9 8 7
33 33 H 1.09002 * 109.47657 * 59.99862 * 9 8 7
34 34 H 1.09004 * 109.46411 * 294.87092 * 10 9 8
35 35 H 1.09000 * 109.47177 * 54.87021 * 10 9 8
36 36 H 1.09002 * 109.47577 * 309.99835 * 12 11 10
37 37 H 1.09002 * 109.47480 * 69.99765 * 12 11 10
38 38 H 0.97003 * 119.99543 * 179.97438 * 16 15 13
39 39 H 1.09001 * 109.47216 * 195.79631 * 21 11 10
40 40 H 1.08994 * 109.47541 * 315.79608 * 21 11 10
41 41 H 1.08993 * 109.46571 * 294.87157 * 22 21 11
42 42 H 1.08999 * 109.46870 * 54.86741 * 22 21 11
43 43 H 1.07999 * 120.06688 * 0.03955 * 25 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2109 0.0000
4 6 1.2901 2.3754 0.0005
5 6 1.9155 3.6077 0.0011
6 6 3.2946 3.6854 0.0068
7 6 4.0568 2.5232 0.0005
8 16 5.8161 2.6217 0.0004
9 6 6.1247 4.4092 0.0013
10 6 7.6330 4.6664 0.0006
11 7 7.8837 6.1085 -0.1225
12 6 7.6203 6.7989 1.1471
13 6 7.6478 8.2890 0.9237
14 1 7.8420 8.6838 -0.0627
15 6 7.4250 9.1485 1.9785
16 7 7.4495 10.4490 1.7836
17 14 7.0899 8.4659 3.6847
18 1 8.3735 8.3017 4.4132
19 1 6.2143 9.4053 4.4305
20 1 6.4154 7.1482 3.5670
21 6 9.2528 6.3669 -0.5880
22 6 9.3461 6.0723 -2.0866
23 6 10.6820 6.4473 -2.5781
24 7 11.7142 6.7365 -2.9552
25 6 3.4295 1.2839 -0.0005
26 1 -0.3634 0.5138 0.8899
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3632 -1.0276 -0.0005
29 1 0.2116 2.3182 0.0002
30 1 1.3247 4.5118 0.0011
31 1 3.7809 4.6498 0.0117
32 1 5.6802 4.8551 -0.8885
33 1 5.6802 4.8543 0.8915
34 1 8.0642 4.3008 0.9326
35 1 8.0901 4.1450 -0.8404
36 1 6.6402 6.5060 1.5235
37 1 8.3851 6.5265 1.8744
38 1 7.2924 11.0536 2.5257
39 1 9.5074 7.4111 -0.4065
40 1 9.9478 5.7243 -0.0475
41 1 9.1810 5.0088 -2.2587
42 1 8.5885 6.6483 -2.6179
43 1 4.0191 0.3790 -0.0016
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000595395685.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:32:53
Heat of formation + Delta-G solvation = 0.717915 kcal
Electronic energy + Delta-G solvation = -23143.247287 eV
Core-core repulsion = 19700.541085 eV
Total energy + Delta-G solvation = -3442.706202 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.98188 -39.15835 -38.29899 -37.46602 -34.72413 -33.19549 -32.13925 -31.76676
-31.04483 -28.69518 -28.09565 -24.82243 -24.48397 -23.43331 -23.12908 -21.40367
-19.48076 -18.97382 -18.47320 -17.44953 -17.05938 -16.96290 -16.65210 -16.57963
-16.47811 -15.99000 -15.63702 -15.30759 -14.94169 -14.81380 -14.53456 -14.37963
-14.20108 -14.11926 -13.85194 -13.59059 -13.36323 -13.12342 -12.95537 -12.66901
-12.63489 -12.48183 -12.37696 -12.13075 -11.99765 -11.95102 -11.77673 -11.50716
-11.30431 -11.10264 -10.74742 -10.63654 -9.32859 -9.10059 -8.37804 -8.23451
-6.25286 0.17452 0.40974 0.46697 1.37123 1.39341 1.43822 1.47849
1.77589 1.85822 2.37122 2.40465 2.67823 2.94095 3.11845 3.56450
3.83413 3.91265 4.05369 4.10239 4.16769 4.18290 4.26608 4.36500
4.43022 4.48085 4.53281 4.58974 4.69410 4.75710 4.77315 4.85323
4.89410 4.97489 5.05179 5.19522 5.20099 5.23320 5.30137 5.44183
5.59833 5.63080 5.99471 6.30688 6.42249 6.60606 6.66460 6.83473
7.38174 8.92672
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.010852 B = 0.003103 C = 0.002553
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2579.634406 B = 9021.369094 C =10965.234269
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.334 6.334
3 C 0.135 3.865
4 C -0.214 4.214
5 C -0.063 4.063
6 C -0.183 4.183
7 C -0.054 4.054
8 S -0.105 6.105
9 C -0.094 4.094
10 C 0.066 3.934
11 N -0.525 5.525
12 C 0.169 3.831
13 C -0.507 4.507
14 H 0.048 0.952
15 C 0.010 3.990
16 N -0.948 5.948
17 Si 0.934 3.066
18 H -0.274 1.274
19 H -0.287 1.287
20 H -0.245 1.245
21 C 0.065 3.935
22 C -0.012 4.012
23 C 0.241 3.759
24 N -0.502 5.502
25 C -0.154 4.154
26 H 0.065 0.935
27 H 0.067 0.933
28 H 0.119 0.881
29 H 0.155 0.845
30 H 0.150 0.850
31 H 0.128 0.872
32 H 0.103 0.897
33 H 0.076 0.924
34 H 0.041 0.959
35 H 0.108 0.892
36 H 0.036 0.964
37 H -0.012 1.012
38 H 0.264 0.736
39 H 0.063 0.937
40 H 0.047 0.953
41 H 0.141 0.859
42 H 0.128 0.872
43 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.328 -21.845 -3.576 26.368
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 O -0.248 6.248
3 C 0.088 3.912
4 C -0.235 4.235
5 C -0.082 4.082
6 C -0.207 4.207
7 C -0.167 4.167
8 S 0.139 5.861
9 C -0.243 4.243
10 C -0.063 4.063
11 N -0.249 5.249
12 C 0.042 3.958
13 C -0.546 4.546
14 H 0.067 0.933
15 C -0.187 4.187
16 N -0.590 5.590
17 Si 0.759 3.241
18 H -0.199 1.199
19 H -0.213 1.213
20 H -0.168 1.168
21 C -0.065 4.065
22 C -0.052 4.052
23 C -0.075 4.075
24 N -0.181 5.181
25 C -0.178 4.178
26 H 0.084 0.916
27 H 0.085 0.915
28 H 0.137 0.863
29 H 0.173 0.827
30 H 0.167 0.833
31 H 0.146 0.854
32 H 0.122 0.878
33 H 0.095 0.905
34 H 0.059 0.941
35 H 0.126 0.874
36 H 0.054 0.946
37 H 0.006 0.994
38 H 0.073 0.927
39 H 0.082 0.918
40 H 0.065 0.935
41 H 0.159 0.841
42 H 0.146 0.854
43 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -12.100 -22.094 -4.404 25.573
hybrid contribution -1.010 1.307 1.692 2.365
sum -13.111 -20.787 -2.712 24.725
Atomic orbital electron populations
1.23374 0.76188 1.05669 1.02434 1.86050 1.23663 1.26519 1.88531
1.18936 0.91739 0.85039 0.95523 1.21528 1.01341 0.91597 1.09011
1.21172 0.93744 0.98331 0.94997 1.21359 0.95291 0.97312 1.06739
1.21574 0.97267 0.95775 1.02080 1.85182 0.99083 1.10004 1.91823
1.23650 1.01275 0.92971 1.06387 1.21873 0.92820 0.89055 1.02521
1.61675 1.24577 1.07920 1.30774 1.20011 0.95707 0.92923 0.87142
1.21286 1.46879 0.90534 0.95897 0.93337 1.25739 0.95193 0.94857
1.02939 1.70044 1.52133 1.03497 1.33279 0.85909 0.78737 0.79424
0.80052 1.19904 1.21342 1.16797 1.21850 0.89124 1.01986 0.93529
1.19415 0.84669 1.05783 0.95348 1.29660 0.94800 0.91332 0.91754
1.81215 1.14076 1.11382 1.11399 1.19985 0.92139 0.96808 1.08912
0.91622 0.91471 0.86281 0.82747 0.83277 0.85365 0.87812 0.90497
0.94075 0.87357 0.94596 0.99448 0.92703 0.91824 0.93495 0.84105
0.85448 0.84778
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.16 9.81 113.37 1.11 1.28 16
2 O -0.33 -6.20 10.49 -92.45 -0.97 -7.17 16
3 C 0.13 2.81 6.68 22.49 0.15 2.96 16
4 C -0.21 -3.77 9.04 22.40 0.20 -3.57 16
5 C -0.06 -1.21 10.03 22.23 0.22 -0.98 16
6 C -0.18 -4.22 9.36 22.43 0.21 -4.01 16
7 C -0.05 -1.29 6.11 22.61 0.14 -1.15 16
8 S -0.11 -2.41 21.92 -56.49 -1.24 -3.65 16
9 C -0.09 -2.28 4.36 71.98 0.31 -1.97 16
10 C 0.07 1.62 4.81 86.31 0.42 2.03 16
11 N -0.53 -16.73 4.36 -900.78 -3.92 -20.66 16
12 C 0.17 6.98 3.62 85.56 0.31 7.28 16
13 C -0.51 -26.50 8.79 25.60 0.22 -26.27 16
14 H 0.05 2.81 7.56 -2.91 -0.02 2.79 16
15 C 0.01 0.55 5.47 84.65 0.46 1.01 16
16 N -0.95 -57.07 13.96 21.45 0.30 -56.77 16
17 Si 0.93 41.77 27.47 68.60 1.88 43.66 16
18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
19 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16
20 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16
21 C 0.06 1.90 4.75 86.31 0.41 2.31 16
22 C -0.01 -0.26 5.75 28.79 0.17 -0.09 16
23 C 0.24 6.59 15.43 89.44 1.38 7.97 16
24 N -0.50 -16.86 18.54 20.01 0.37 -16.49 16
25 C -0.15 -3.55 9.73 22.50 0.22 -3.34 16
26 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16
27 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16
28 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16
29 H 0.16 1.79 6.29 -2.91 -0.02 1.77 16
30 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16
31 H 0.13 2.99 5.87 -2.91 -0.02 2.97 16
32 H 0.10 2.46 7.76 -2.39 -0.02 2.44 16
33 H 0.08 2.11 6.55 -2.39 -0.02 2.09 16
34 H 0.04 1.04 8.00 -2.39 -0.02 1.02 16
35 H 0.11 1.99 6.56 -2.39 -0.02 1.97 16
36 H 0.04 1.48 5.77 -2.39 -0.01 1.46 16
37 H -0.01 -0.51 7.55 -2.39 -0.02 -0.52 16
38 H 0.26 15.00 8.31 -92.71 -0.77 14.22 16
39 H 0.06 2.40 6.57 -2.39 -0.02 2.38 16
40 H 0.05 1.26 8.00 -2.39 -0.02 1.24 16
41 H 0.14 1.93 6.89 -2.39 -0.02 1.92 16
42 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16
43 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16
Total: -1.00 -68.77 370.63 3.32 -65.45
By element:
Atomic # 1 Polarization: 11.19 SS G_CDS: 0.96 Total: 12.16 kcal
Atomic # 6 Polarization: -22.47 SS G_CDS: 5.94 Total: -16.54 kcal
Atomic # 7 Polarization: -90.66 SS G_CDS: -3.25 Total: -93.91 kcal
Atomic # 8 Polarization: -6.20 SS G_CDS: -0.97 Total: -7.17 kcal
Atomic # 14 Polarization: 41.77 SS G_CDS: 1.88 Total: 43.66 kcal
Atomic # 16 Polarization: -2.41 SS G_CDS: -1.24 Total: -3.65 kcal
Total: -68.77 3.32 -65.45 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595395685.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.171 kcal
(2) G-P(sol) polarization free energy of solvation -68.775 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.604 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.453 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.718 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds