Wall clock time and date at job start Tue Mar 31 2020 12:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47900 * 110.99849 * 2 1 4 4 C 1.53994 * 107.05767 * 145.84192 * 3 2 1 5 5 C 1.54595 * 105.14165 * 358.77602 * 4 3 2 6 6 H 1.09003 * 110.72283 * 96.57402 * 5 4 3 7 7 C 1.52996 * 110.72608 * 219.68335 * 5 4 3 8 8 N 1.46494 * 109.47132 * 182.54749 * 7 5 4 9 9 C 1.34774 * 120.00288 * 179.97438 * 8 7 5 10 10 O 1.21619 * 119.99673 * 0.02562 * 9 8 7 11 11 C 1.47429 * 120.00574 * 180.02562 * 9 8 7 12 12 C 1.39673 * 120.20972 * 0.02562 * 11 9 8 13 13 C 1.37814 * 119.93492 * 179.97438 * 12 11 9 14 14 C 1.38656 * 120.38249 * 359.97438 * 13 12 11 15 15 C 1.37912 * 120.43895 * 359.76395 * 14 13 12 16 16 C 1.39111 * 120.04766 * 0.51404 * 15 14 13 17 17 S 1.76198 * 120.18904 * 179.74179 * 16 15 14 18 18 C 1.76195 * 99.99898 * 353.14854 * 17 16 15 19 19 H 1.07994 * 120.00441 * 354.34275 * 18 17 16 20 20 C 1.38815 * 119.99907 * 174.34376 * 18 17 16 21 21 N 1.31551 * 119.99865 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00113 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47226 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47024 * 300.00322 * 22 20 18 25 25 H 1.48500 * 109.47010 * 59.99999 * 22 20 18 26 26 C 1.48727 * 111.04484 * 117.57613 * 2 1 3 27 27 H 1.08998 * 109.47301 * 59.87262 * 1 2 3 28 28 H 1.09004 * 109.46823 * 179.87302 * 1 2 3 29 29 H 1.09000 * 109.47716 * 299.87302 * 1 2 3 30 30 H 1.09008 * 109.91754 * 26.49358 * 3 2 1 31 31 H 1.09003 * 110.08562 * 265.29220 * 3 2 1 32 32 H 1.08998 * 110.31007 * 239.85907 * 4 3 2 33 33 H 1.08999 * 110.30909 * 117.69447 * 4 3 2 34 34 H 1.08998 * 109.46819 * 62.54540 * 7 5 4 35 35 H 1.08994 * 109.47206 * 302.54979 * 7 5 4 36 36 H 0.97003 * 120.00339 * 0.02562 * 8 7 5 37 37 H 1.08001 * 120.03803 * 359.97438 * 12 11 9 38 38 H 1.08003 * 119.80420 * 180.02562 * 13 12 11 39 39 H 1.07997 * 119.77704 * 180.02562 * 14 13 12 40 40 H 1.07996 * 119.98108 * 180.26103 * 15 14 13 41 41 H 0.97002 * 120.00212 * 180.02562 * 21 20 18 42 42 H 1.08998 * 110.84034 * 81.95909 * 26 2 1 43 43 H 1.09003 * 110.58582 * 318.77498 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2982 1.3659 0.8266 5 6 3.4491 -0.0929 1.3155 6 1 4.1140 -0.6531 0.6580 7 6 3.9588 -0.1307 2.7575 8 7 4.1495 -1.5229 3.1717 9 6 4.5964 -1.8017 4.4123 10 8 4.8409 -0.8976 5.1880 11 6 4.7888 -3.2027 4.8290 12 6 4.5099 -4.2446 3.9415 13 6 4.6923 -5.5521 4.3368 14 6 5.1525 -5.8414 5.6124 15 6 5.4379 -4.8248 6.4995 16 6 5.2548 -3.4986 6.1214 17 16 5.6118 -2.1970 7.2541 18 6 5.9443 -3.1378 8.7063 19 1 5.7966 -4.2076 8.7023 20 6 6.3962 -2.5039 9.8556 21 7 6.5756 -1.2007 9.8607 22 14 6.7481 -3.5012 11.3954 23 1 7.2147 -2.5956 12.4758 24 1 5.5085 -4.1932 11.8310 25 1 7.8003 -4.5077 11.1035 26 6 2.0031 -0.6426 1.2304 27 1 -0.3634 0.5158 -0.8888 28 1 -0.3633 -1.0277 -0.0023 29 1 -0.3634 0.5118 0.8911 30 1 1.2757 2.0562 0.4572 31 1 2.2116 1.7001 -1.0203 32 1 3.2135 2.0429 1.6767 33 1 4.1469 1.6455 0.2024 34 1 3.2305 0.3469 3.4129 35 1 4.9083 0.4007 2.8214 36 1 3.9548 -2.2440 2.5529 37 1 4.1516 -4.0258 2.9464 38 1 4.4763 -6.3561 3.6487 39 1 5.2923 -6.8696 5.9117 40 1 5.7999 -5.0584 7.4897 41 1 6.8917 -0.7578 10.6637 42 1 2.0093 -1.7279 1.1296 43 1 1.4244 -0.3397 2.1031 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729811486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:13 Heat of formation + Delta-G solvation = -5.069172 kcal Electronic energy + Delta-G solvation = -23847.271781 eV Core-core repulsion = 20404.314632 eV Total energy + Delta-G solvation = -3442.957149 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.79487 -38.98519 -37.41319 -34.87136 -32.75047 -32.43580 -30.66129 -30.26421 -29.21348 -26.82924 -25.82067 -24.63926 -22.80872 -21.89137 -21.31946 -20.63703 -19.91909 -18.17731 -17.19119 -16.57335 -15.89813 -15.68244 -15.25851 -15.13029 -15.02904 -14.35258 -14.32774 -13.94837 -13.91024 -13.68200 -13.37702 -12.99114 -12.83258 -12.67641 -12.28009 -11.93862 -11.80825 -11.61100 -11.57473 -11.53152 -11.22626 -11.18196 -11.04956 -10.94302 -10.78823 -10.32808 -9.81746 -9.63732 -9.48959 -8.79509 -8.73638 -8.71495 -8.32473 -8.06321 -6.53188 -6.45666 -4.16325 1.54125 2.02491 3.10858 3.14093 3.18269 3.41191 3.50285 3.53103 3.71900 4.06955 4.34302 4.40438 4.50218 4.65705 4.92493 4.95243 5.05541 5.12879 5.14345 5.17027 5.22520 5.33713 5.40268 5.42959 5.51120 5.57613 5.60569 5.64763 5.69665 5.77277 5.86844 5.98367 6.08527 6.12868 6.39378 6.54566 6.59999 6.69358 6.76119 6.85983 7.03529 7.13895 7.44949 7.59632 7.91142 8.16188 8.80177 9.00323 10.57551 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018898 B = 0.002940 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.246762 B = 9521.543099 C =10582.965431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.525 5.525 3 C 0.035 3.965 4 C -0.124 4.124 5 C -0.103 4.103 6 H 0.090 0.910 7 C 0.132 3.868 8 N -0.738 5.738 9 C 0.552 3.448 10 O -0.510 6.510 11 C -0.178 4.178 12 C -0.061 4.061 13 C -0.187 4.187 14 C -0.077 4.077 15 C -0.153 4.153 16 C -0.057 4.057 17 S 0.184 5.816 18 C -0.597 4.597 19 H 0.090 0.910 20 C 0.084 3.916 21 N -0.858 5.858 22 Si 0.919 3.081 23 H -0.280 1.280 24 H -0.270 1.270 25 H -0.270 1.270 26 C 0.038 3.962 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.028 0.972 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.395 0.605 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.275 0.725 42 H 0.083 0.917 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 0.114 -18.257 20.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.249 5.249 3 C -0.093 4.093 4 C -0.163 4.163 5 C -0.122 4.122 6 H 0.108 0.892 7 C 0.008 3.992 8 N -0.393 5.393 9 C 0.341 3.659 10 O -0.387 6.387 11 C -0.193 4.193 12 C -0.081 4.081 13 C -0.212 4.212 14 C -0.099 4.099 15 C -0.179 4.179 16 C -0.177 4.177 17 S 0.449 5.551 18 C -0.743 4.743 19 H 0.108 0.892 20 C -0.127 4.127 21 N -0.491 5.491 22 Si 0.744 3.256 23 H -0.206 1.206 24 H -0.195 1.195 25 H -0.195 1.195 26 C -0.090 4.090 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.229 0.771 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.156 0.844 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.768 2.180 -17.857 19.595 hybrid contribution -0.252 -1.985 1.439 2.465 sum -8.020 0.195 -16.418 18.273 Atomic orbital electron populations 1.22515 0.87843 1.02284 1.00709 1.64724 1.08131 1.14944 1.37085 1.22871 0.95872 0.89892 1.00621 1.22391 0.97817 0.96185 0.99863 1.22326 0.96660 0.96980 0.96278 0.89167 1.21255 1.01238 0.83634 0.93067 1.45827 1.70455 1.07851 1.15164 1.18319 0.77254 0.89130 0.81222 1.90788 1.49686 1.47215 1.51004 1.19114 1.12861 0.91937 0.95375 1.20892 0.97314 0.92681 0.97209 1.20636 1.07747 0.95709 0.97065 1.21085 0.96828 0.98348 0.93642 1.21435 1.03794 0.91520 1.01110 1.23088 0.96904 1.00261 0.97398 1.84756 1.70342 1.02415 0.97593 1.24023 1.52487 0.98193 0.99609 0.89205 1.25096 0.93398 0.95138 0.99098 1.69965 1.40982 1.08322 1.29823 0.86206 0.79204 0.79693 0.80502 1.20558 1.19485 1.19479 1.23380 0.94457 0.99988 0.91149 0.91401 0.91195 0.95300 0.93693 0.90310 0.90769 0.90488 0.91652 0.91275 0.77053 0.87189 0.87076 0.87029 0.84394 0.91477 0.89822 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.40 60.07 0.56 0.68 16 2 N -0.53 -4.75 5.55 -238.54 -1.32 -6.07 16 3 C 0.04 0.28 6.70 -2.76 -0.02 0.27 16 4 C -0.12 -1.00 6.51 -25.38 -0.17 -1.17 16 5 C -0.10 -0.94 3.09 -88.76 -0.27 -1.22 16 6 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 7 C 0.13 1.61 4.99 -4.05 -0.02 1.59 16 8 N -0.74 -10.24 5.38 -61.39 -0.33 -10.57 16 9 C 0.55 10.61 7.75 -12.52 -0.10 10.51 16 10 O -0.51 -11.90 13.77 5.26 0.07 -11.83 16 11 C -0.18 -3.50 5.89 -104.75 -0.62 -4.11 16 12 C -0.06 -0.95 9.53 -39.20 -0.37 -1.33 16 13 C -0.19 -2.86 10.02 -39.58 -0.40 -3.26 16 14 C -0.08 -1.31 10.03 -39.55 -0.40 -1.71 16 15 C -0.15 -3.21 9.22 -39.38 -0.36 -3.57 16 16 C -0.06 -1.29 6.14 -38.39 -0.24 -1.53 16 17 S 0.18 4.96 18.56 -107.50 -2.00 2.97 16 18 C -0.60 -16.48 9.00 30.95 0.28 -16.20 16 19 H 0.09 2.35 4.98 -52.49 -0.26 2.09 16 20 C 0.08 2.30 5.49 -17.46 -0.10 2.20 16 21 N -0.86 -24.80 13.22 55.49 0.73 -24.06 16 22 Si 0.92 20.69 29.55 -169.99 -5.02 15.67 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 C 0.04 0.35 5.84 -1.79 -0.01 0.34 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.03 0.22 8.01 -51.93 -0.42 -0.19 16 30 H 0.04 0.35 7.74 -51.92 -0.40 -0.05 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.39 4.37 6.44 -40.82 -0.26 4.11 16 37 H 0.11 1.29 6.40 -52.49 -0.34 0.96 16 38 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.14 3.00 5.03 -52.49 -0.26 2.74 16 41 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.51 7.81 -51.93 -0.41 0.10 16 LS Contribution 360.68 15.07 5.44 5.44 Total: -1.00 -32.00 360.68 -10.77 -42.77 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.11 Total: 4.20 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -2.22 Total: -18.51 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: -0.92 Total: -40.70 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -2.00 Total: 2.97 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.00 -10.77 -42.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729811486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.699 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds