Wall clock time and date at job start Tue Mar 31 2020 12:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47900 * 110.99849 * 2 1 4 4 C 1.53994 * 107.05767 * 145.84192 * 3 2 1 5 5 C 1.54595 * 105.14165 * 358.77602 * 4 3 2 6 6 H 1.09003 * 110.72283 * 96.57402 * 5 4 3 7 7 C 1.52996 * 110.72608 * 219.68335 * 5 4 3 8 8 N 1.46494 * 109.47132 * 182.54749 * 7 5 4 9 9 C 1.34774 * 120.00288 * 179.97438 * 8 7 5 10 10 O 1.21619 * 119.99673 * 0.02562 * 9 8 7 11 11 C 1.47429 * 120.00574 * 180.02562 * 9 8 7 12 12 C 1.39673 * 120.20972 * 0.02562 * 11 9 8 13 13 C 1.37814 * 119.93492 * 179.97438 * 12 11 9 14 14 C 1.38656 * 120.38249 * 359.97438 * 13 12 11 15 15 C 1.37912 * 120.43895 * 359.76395 * 14 13 12 16 16 C 1.39111 * 120.04766 * 0.51404 * 15 14 13 17 17 S 1.76198 * 120.18904 * 179.74179 * 16 15 14 18 18 C 1.76195 * 99.99898 * 353.14854 * 17 16 15 19 19 H 1.07994 * 120.00441 * 354.34275 * 18 17 16 20 20 C 1.38815 * 119.99907 * 174.34376 * 18 17 16 21 21 N 1.31551 * 119.99865 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00113 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47226 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47024 * 300.00322 * 22 20 18 25 25 H 1.48500 * 109.47010 * 59.99999 * 22 20 18 26 26 C 1.48727 * 111.04484 * 117.57613 * 2 1 3 27 27 H 1.08998 * 109.47301 * 59.87262 * 1 2 3 28 28 H 1.09004 * 109.46823 * 179.87302 * 1 2 3 29 29 H 1.09000 * 109.47716 * 299.87302 * 1 2 3 30 30 H 1.09008 * 109.91754 * 26.49358 * 3 2 1 31 31 H 1.09003 * 110.08562 * 265.29220 * 3 2 1 32 32 H 1.08998 * 110.31007 * 239.85907 * 4 3 2 33 33 H 1.08999 * 110.30909 * 117.69447 * 4 3 2 34 34 H 1.08998 * 109.46819 * 62.54540 * 7 5 4 35 35 H 1.08994 * 109.47206 * 302.54979 * 7 5 4 36 36 H 0.97003 * 120.00339 * 0.02562 * 8 7 5 37 37 H 1.08001 * 120.03803 * 359.97438 * 12 11 9 38 38 H 1.08003 * 119.80420 * 180.02562 * 13 12 11 39 39 H 1.07997 * 119.77704 * 180.02562 * 14 13 12 40 40 H 1.07996 * 119.98108 * 180.26103 * 15 14 13 41 41 H 0.97002 * 120.00212 * 180.02562 * 21 20 18 42 42 H 1.08998 * 110.84034 * 81.95909 * 26 2 1 43 43 H 1.09003 * 110.58582 * 318.77498 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2982 1.3659 0.8266 5 6 3.4491 -0.0929 1.3155 6 1 4.1140 -0.6531 0.6580 7 6 3.9588 -0.1307 2.7575 8 7 4.1495 -1.5229 3.1717 9 6 4.5964 -1.8017 4.4123 10 8 4.8409 -0.8976 5.1880 11 6 4.7888 -3.2027 4.8290 12 6 4.5099 -4.2446 3.9415 13 6 4.6923 -5.5521 4.3368 14 6 5.1525 -5.8414 5.6124 15 6 5.4379 -4.8248 6.4995 16 6 5.2548 -3.4986 6.1214 17 16 5.6118 -2.1970 7.2541 18 6 5.9443 -3.1378 8.7063 19 1 5.7966 -4.2076 8.7023 20 6 6.3962 -2.5039 9.8556 21 7 6.5756 -1.2007 9.8607 22 14 6.7481 -3.5012 11.3954 23 1 7.2147 -2.5956 12.4758 24 1 5.5085 -4.1932 11.8310 25 1 7.8003 -4.5077 11.1035 26 6 2.0031 -0.6426 1.2304 27 1 -0.3634 0.5158 -0.8888 28 1 -0.3633 -1.0277 -0.0023 29 1 -0.3634 0.5118 0.8911 30 1 1.2757 2.0562 0.4572 31 1 2.2116 1.7001 -1.0203 32 1 3.2135 2.0429 1.6767 33 1 4.1469 1.6455 0.2024 34 1 3.2305 0.3469 3.4129 35 1 4.9083 0.4007 2.8214 36 1 3.9548 -2.2440 2.5529 37 1 4.1516 -4.0258 2.9464 38 1 4.4763 -6.3561 3.6487 39 1 5.2923 -6.8696 5.9117 40 1 5.7999 -5.0584 7.4897 41 1 6.8917 -0.7578 10.6637 42 1 2.0093 -1.7279 1.1296 43 1 1.4244 -0.3397 2.1031 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729811486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:12 Heat of formation + Delta-G solvation = -27.555968 kcal Electronic energy + Delta-G solvation = -23848.246881 eV Core-core repulsion = 20404.314632 eV Total energy + Delta-G solvation = -3443.932250 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08236 -39.94622 -38.87656 -36.07588 -34.76387 -33.43871 -31.96897 -31.76636 -30.05195 -27.84103 -27.66769 -25.60020 -24.13881 -23.33616 -22.08995 -21.64388 -21.18824 -19.86623 -18.74859 -17.50556 -17.33946 -17.05056 -16.75124 -16.27240 -16.20582 -15.64780 -15.44776 -15.28519 -15.24317 -14.72257 -14.67939 -14.31186 -14.16871 -13.72315 -13.35431 -13.29831 -13.05785 -12.96950 -12.89011 -12.54816 -12.43789 -12.35881 -12.27063 -12.05760 -11.85907 -11.50466 -11.48523 -11.39031 -11.24593 -10.40591 -10.12978 -9.91165 -9.74579 -9.42398 -8.46316 -8.44810 -6.24079 0.05081 0.55278 1.26445 1.37710 1.43707 1.65095 2.03776 2.17020 2.29098 2.87940 3.03058 3.05881 3.25294 3.60399 3.67442 3.89163 3.97685 4.04263 4.24403 4.28238 4.35998 4.41942 4.52033 4.54167 4.62843 4.63320 4.70940 4.75993 4.81733 4.87799 4.93450 5.00517 5.04354 5.11899 5.15981 5.29454 5.37053 5.46394 5.52600 5.58865 5.68768 5.87530 6.04748 6.10437 6.17224 6.65078 6.95975 7.38074 8.60420 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018898 B = 0.002940 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.246762 B = 9521.543099 C =10582.965431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.532 5.532 3 C 0.035 3.965 4 C -0.124 4.124 5 C -0.091 4.091 6 H 0.103 0.897 7 C 0.134 3.866 8 N -0.712 5.712 9 C 0.545 3.455 10 O -0.558 6.558 11 C -0.182 4.182 12 C -0.053 4.053 13 C -0.157 4.157 14 C -0.070 4.070 15 C -0.176 4.176 16 C -0.073 4.073 17 S 0.062 5.938 18 C -0.603 4.603 19 H 0.094 0.906 20 C 0.024 3.976 21 N -0.906 5.906 22 Si 0.993 3.007 23 H -0.274 1.274 24 H -0.262 1.262 25 H -0.260 1.260 26 C 0.038 3.962 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.413 0.587 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.149 0.851 40 H 0.118 0.882 41 H 0.276 0.724 42 H 0.094 0.906 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.413 -3.173 -21.733 23.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.256 5.256 3 C -0.093 4.093 4 C -0.163 4.163 5 C -0.110 4.110 6 H 0.122 0.878 7 C 0.010 3.990 8 N -0.366 5.366 9 C 0.334 3.666 10 O -0.439 6.439 11 C -0.196 4.196 12 C -0.073 4.073 13 C -0.180 4.180 14 C -0.091 4.091 15 C -0.201 4.201 16 C -0.191 4.191 17 S 0.321 5.679 18 C -0.750 4.750 19 H 0.112 0.888 20 C -0.182 4.182 21 N -0.541 5.541 22 Si 0.814 3.186 23 H -0.199 1.199 24 H -0.186 1.186 25 H -0.184 1.184 26 C -0.090 4.090 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.251 0.749 37 H 0.179 0.821 38 H 0.184 0.816 39 H 0.167 0.833 40 H 0.136 0.864 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.958 -1.184 -21.463 23.287 hybrid contribution -0.046 -1.138 2.100 2.389 sum -9.004 -2.321 -19.362 21.479 Atomic orbital electron populations 1.22561 0.87124 1.02756 1.01018 1.64762 1.08913 1.15351 1.36594 1.22913 0.95601 0.89622 1.01142 1.22412 0.98569 0.95324 0.99947 1.22229 0.96877 0.98068 0.93843 0.87846 1.21319 1.00462 0.82261 0.94951 1.45607 1.68155 1.09330 1.13503 1.18522 0.77088 0.88745 0.82292 1.90790 1.51806 1.48456 1.52821 1.19505 1.11714 0.93530 0.94818 1.21450 0.95592 0.91780 0.98448 1.21335 1.03234 0.96859 0.96581 1.21542 0.94922 0.99004 0.93609 1.21452 1.05280 0.91863 1.01527 1.22991 0.98882 0.99411 0.97781 1.84928 1.75853 1.06549 1.00563 1.24221 1.52499 0.98214 1.00022 0.88813 1.26152 0.93235 0.96232 1.02533 1.70125 1.43026 1.10225 1.30680 0.85090 0.79340 0.78104 0.76095 1.19873 1.18643 1.18406 1.23378 0.94014 1.00617 0.90968 0.90383 0.90678 0.95727 0.93673 0.89272 0.91336 0.89248 0.93175 0.92360 0.74921 0.82085 0.81613 0.83314 0.86408 0.91519 0.88773 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.40 127.69 1.20 1.38 16 2 N -0.53 -8.30 5.55 -908.61 -5.04 -13.34 16 3 C 0.04 0.49 6.70 86.45 0.58 1.07 16 4 C -0.12 -1.81 6.51 31.47 0.20 -1.60 16 5 C -0.09 -1.47 3.09 -9.59 -0.03 -1.50 16 6 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 7 C 0.13 3.20 4.99 86.38 0.43 3.63 16 8 N -0.71 -18.61 5.38 -466.38 -2.51 -21.12 16 9 C 0.54 21.14 7.75 86.66 0.67 21.82 16 10 O -0.56 -27.80 13.77 -4.09 -0.06 -27.85 16 11 C -0.18 -7.00 5.89 -19.95 -0.12 -7.12 16 12 C -0.05 -1.40 9.53 22.52 0.21 -1.18 16 13 C -0.16 -3.79 10.02 22.27 0.22 -3.57 16 14 C -0.07 -2.09 10.03 22.29 0.22 -1.87 16 15 C -0.18 -7.34 9.22 22.40 0.21 -7.13 16 16 C -0.07 -3.42 6.14 23.04 0.14 -3.28 16 17 S 0.06 3.64 18.56 -56.49 -1.05 2.59 16 18 C -0.60 -35.55 9.00 67.96 0.61 -34.94 16 19 H 0.09 5.20 4.98 -2.91 -0.01 5.18 16 20 C 0.02 1.39 5.49 84.87 0.47 1.86 16 21 N -0.91 -56.00 13.22 21.65 0.29 -55.71 16 22 Si 0.99 44.22 29.55 68.60 2.03 46.25 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 26 C 0.04 0.61 5.84 86.61 0.51 1.12 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.02 0.34 8.01 -2.39 -0.02 0.32 16 30 H 0.04 0.63 7.74 -2.38 -0.02 0.61 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.08 7.85 -2.39 -0.02 1.06 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.38 8.05 -2.39 -0.02 1.36 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.41 7.53 6.44 -92.71 -0.60 6.93 16 37 H 0.16 2.62 6.40 -2.91 -0.02 2.60 16 38 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.12 5.32 5.03 -2.91 -0.01 5.31 16 41 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.04 0.71 7.81 -2.39 -0.02 0.69 16 Total: -1.00 -78.89 360.68 -0.38 -79.27 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.43 Total: 21.22 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: 5.53 Total: -31.30 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -7.26 Total: -90.17 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.06 Total: -27.85 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.05 Total: 2.59 kcal Total: -78.89 -0.38 -79.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729811486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.718 kcal (2) G-P(sol) polarization free energy of solvation -78.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds