Wall clock time and date at job start Tue Mar 31 2020 12:49:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81398 * 1
3 3 C 1.81400 * 103.00265 * 2 1
4 4 H 1.08999 * 110.43087 * 303.90731 * 3 2 1
5 5 C 1.54262 * 110.48531 * 66.45453 * 3 2 1
6 6 C 1.53875 * 106.59793 * 142.42283 * 5 3 2
7 7 C 1.54267 * 106.59927 * 359.97438 * 6 5 3
8 8 H 1.09003 * 110.48410 * 95.20594 * 7 6 5
9 9 N 1.46500 * 110.48548 * 217.71306 * 7 6 5
10 10 C 1.34772 * 119.99886 * 273.54435 * 9 7 6
11 11 O 1.21583 * 120.00528 * 0.02562 * 10 9 7
12 12 N 1.34786 * 120.00207 * 180.02562 * 10 9 7
13 13 C 1.39239 * 120.00198 * 184.98368 * 12 10 9
14 14 C 1.39478 * 119.83232 * 211.52169 * 13 12 10
15 15 C 1.36377 * 120.16663 * 179.97438 * 14 13 12
16 16 C 1.40865 * 119.82671 * 359.97438 * 15 14 13
17 17 C 1.41164 * 120.15859 * 180.02562 * 16 15 14
18 18 H 1.08002 * 119.99846 * 330.42348 * 17 16 15
19 19 C 1.39895 * 119.99625 * 150.43215 * 17 16 15
20 20 N 1.30874 * 120.00198 * 333.83894 * 19 17 16
21 21 Si 1.86801 * 119.99696 * 153.84679 * 19 17 16
22 22 H 1.48503 * 109.47243 * 89.99772 * 21 19 17
23 23 H 1.48499 * 109.47596 * 329.99534 * 21 19 17
24 24 H 1.48506 * 109.46938 * 209.99261 * 21 19 17
25 25 C 1.40862 * 119.67609 * 0.27848 * 16 15 14
26 26 C 1.36378 * 119.82689 * 359.43950 * 25 16 15
27 27 C 1.54884 * 104.19447 * 336.39242 * 7 6 5
28 28 H 1.09003 * 109.46887 * 300.00571 * 1 2 3
29 29 H 1.08999 * 109.46717 * 59.99996 * 1 2 3
30 30 H 1.08998 * 109.47114 * 180.02562 * 1 2 3
31 31 H 1.08993 * 110.03494 * 23.13750 * 5 3 2
32 32 H 1.09000 * 110.07272 * 261.72774 * 5 3 2
33 33 H 1.09002 * 110.03524 * 240.71264 * 6 5 3
34 34 H 1.09001 * 110.07612 * 119.30280 * 6 5 3
35 35 H 0.96998 * 119.99756 * 93.54686 * 9 7 6
36 36 H 0.96997 * 119.99316 * 4.98096 * 12 10 9
37 37 H 1.07995 * 119.91672 * 359.95527 * 14 13 12
38 38 H 1.08004 * 120.08250 * 179.97438 * 15 14 13
39 39 H 0.97002 * 120.00223 * 354.21095 * 20 19 17
40 40 H 1.08002 * 120.08872 * 179.72062 * 25 16 15
41 41 H 1.08000 * 119.91278 * 180.27009 * 26 25 16
42 42 H 1.09004 * 110.75786 * 156.25911 * 27 7 6
43 43 H 1.09005 * 110.75444 * 279.62561 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2221 1.7675 0.0000
4 1 1.7525 2.2664 -0.8477
5 6 1.7811 2.4234 1.3248
6 6 2.8643 3.4548 1.6865
7 6 3.9260 3.3891 0.5693
8 1 3.7331 4.1515 -0.1855
9 7 5.2700 3.5521 1.1290
10 6 5.7799 4.7866 1.3088
11 8 5.1245 5.7651 1.0069
12 7 7.0167 4.9366 1.8233
13 6 7.5034 6.2101 2.1059
14 6 8.8692 6.4711 1.9958
15 6 9.3532 7.7162 2.2705
16 6 8.4699 8.7399 2.6657
17 6 8.9634 10.0313 2.9511
18 1 9.9658 10.1539 3.3339
19 6 8.1538 11.1522 2.7383
20 7 7.1984 11.1093 1.8449
21 14 8.4365 12.7102 3.7294
22 1 9.4037 13.5822 3.0156
23 1 8.9814 12.3556 5.0645
24 1 7.1491 13.4315 3.8957
25 6 7.0927 8.4672 2.7797
26 6 6.6226 7.2188 2.4962
27 6 3.7574 1.9718 -0.0321
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0276 0.0005
31 1 1.7070 1.6693 2.1083
32 1 0.8203 2.9212 1.1940
33 1 3.3159 3.2012 2.6456
34 1 2.4299 4.4535 1.7310
35 1 5.7928 2.7715 1.3702
36 1 7.5675 4.1572 1.9967
37 1 9.5450 5.6853 1.6927
38 1 10.4111 7.9167 2.1852
39 1 7.1046 10.3321 1.2720
40 1 6.4101 9.2459 3.0865
41 1 5.5664 7.0093 2.5789
42 1 4.1299 1.9398 -1.0560
43 1 4.2595 1.2276 0.5861
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000743082578.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:49:48
Heat of formation + Delta-G solvation = -23.618867 kcal
Electronic energy + Delta-G solvation = -23666.090059 eV
Core-core repulsion = 20222.328535 eV
Total energy + Delta-G solvation = -3443.761524 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.14559 -38.45429 -37.26743 -34.59122 -33.70942 -32.78260 -29.65760 -29.52684
-29.08182 -28.78290 -27.38196 -24.61838 -21.96033 -21.35545 -21.23701 -20.41933
-20.01568 -17.97191 -17.85521 -17.27268 -16.44832 -16.19448 -15.27720 -14.90428
-14.56190 -14.42572 -14.08942 -13.95860 -13.87080 -13.71827 -13.45262 -13.33756
-12.66886 -12.50227 -12.34642 -12.17546 -11.95706 -11.77338 -11.51202 -11.35834
-11.31302 -11.05751 -11.00038 -10.78113 -10.36861 -10.18607 -10.03274 -9.87729
-9.40022 -9.13326 -8.95616 -8.71439 -8.05444 -7.70877 -7.19886 -6.97051
-4.30898 1.29193 2.17621 2.65249 2.93180 2.99613 3.18936 3.26352
3.40124 3.66386 4.07820 4.14491 4.21562 4.55977 4.64747 4.65945
4.74002 4.76117 5.00210 5.06942 5.10263 5.17972 5.26105 5.32214
5.47157 5.54160 5.69606 5.77733 5.99880 6.03679 6.05446 6.28772
6.59139 6.68118 6.77025 6.94794 7.16605 7.17573 7.46026 7.72088
7.82012 7.85404 7.90474 8.26317 8.34360 8.44711 8.78626 8.94020
9.07392 10.13642
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.031899 B = 0.002166 C = 0.002066
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 877.564584 B =12924.529926 C =13550.054132
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 S -0.259 6.259
3 C -0.057 4.057
4 H 0.095 0.905
5 C -0.118 4.118
6 C -0.135 4.135
7 C 0.168 3.832
8 H 0.096 0.904
9 N -0.746 5.746
10 C 0.694 3.306
11 O -0.575 6.575
12 N -0.666 5.666
13 C 0.006 3.994
14 C -0.099 4.099
15 C -0.214 4.214
16 C 0.092 3.908
17 C -0.527 4.527
18 H 0.075 0.925
19 C 0.038 3.962
20 N -0.796 5.796
21 Si 1.066 2.934
22 H -0.278 1.278
23 H -0.276 1.276
24 H -0.274 1.274
25 C -0.203 4.203
26 C -0.070 4.070
27 C -0.106 4.106
28 H 0.077 0.923
29 H 0.076 0.924
30 H 0.099 0.901
31 H 0.078 0.922
32 H 0.067 0.933
33 H 0.072 0.928
34 H 0.074 0.926
35 H 0.393 0.607
36 H 0.391 0.609
37 H 0.091 0.909
38 H 0.096 0.904
39 H 0.299 0.701
40 H 0.104 0.896
41 H 0.108 0.892
42 H 0.082 0.918
43 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.060 -19.505 -2.197 22.056
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.290 4.290
2 S -0.031 6.031
3 C -0.186 4.186
4 H 0.113 0.887
5 C -0.157 4.157
6 C -0.175 4.175
7 C 0.061 3.939
8 H 0.114 0.886
9 N -0.402 5.402
10 C 0.395 3.605
11 O -0.452 6.452
12 N -0.312 5.312
13 C -0.086 4.086
14 C -0.119 4.119
15 C -0.234 4.234
16 C 0.088 3.912
17 C -0.555 4.555
18 H 0.093 0.907
19 C -0.184 4.184
20 N -0.419 5.419
21 Si 0.890 3.110
22 H -0.204 1.204
23 H -0.201 1.201
24 H -0.199 1.199
25 C -0.223 4.223
26 C -0.091 4.091
27 C -0.145 4.145
28 H 0.096 0.904
29 H 0.095 0.905
30 H 0.118 0.882
31 H 0.096 0.904
32 H 0.086 0.914
33 H 0.091 0.909
34 H 0.093 0.907
35 H 0.226 0.774
36 H 0.224 0.776
37 H 0.109 0.891
38 H 0.115 0.885
39 H 0.112 0.888
40 H 0.122 0.878
41 H 0.126 0.874
42 H 0.101 0.899
43 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -10.668 -17.975 -2.274 21.026
hybrid contribution 0.222 -1.418 -0.204 1.450
sum -10.446 -19.394 -2.478 22.167
Atomic orbital electron populations
1.23372 0.94225 1.06368 1.05066 1.86842 1.07436 1.10898 1.97896
1.23959 0.99738 0.93373 1.01543 0.88669 1.22519 0.99081 0.98573
0.95569 1.22595 0.95860 0.99573 0.99445 1.21523 0.81041 0.96269
0.95089 0.88602 1.45125 1.17859 1.06742 1.70436 1.16013 0.82318
0.83382 0.78819 1.90929 1.60492 1.37389 1.56385 1.42080 1.15046
1.08127 1.65946 1.16899 0.92454 0.84398 1.14897 1.20072 0.92777
0.96687 1.02405 1.20540 0.98517 0.93747 1.10575 1.17713 0.91469
0.93268 0.88709 1.20454 1.02542 0.91771 1.40739 0.90708 1.26978
0.91839 1.03696 0.95877 1.70426 1.26824 1.32877 1.11794 0.83651
0.77323 0.73863 0.76206 1.20384 1.20101 1.19892 1.20799 0.96071
0.95963 1.09495 1.20424 0.98065 0.92988 0.97576 1.22566 0.92738
0.96693 1.02494 0.90372 0.90498 0.88217 0.90365 0.91376 0.90929
0.90705 0.77394 0.77617 0.89091 0.88547 0.88754 0.87813 0.87430
0.89892 0.89848
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.70 10.62 101.05 1.07 0.38 16
2 S -0.26 -2.14 21.66 -107.50 -2.33 -4.46 16
3 C -0.06 -0.45 3.38 -25.06 -0.08 -0.54 16
4 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16
5 C -0.12 -0.95 6.25 -25.62 -0.16 -1.11 16
6 C -0.13 -1.41 6.53 -25.61 -0.17 -1.58 16
7 C 0.17 1.85 3.16 -66.27 -0.21 1.64 16
8 H 0.10 1.26 7.66 -51.93 -0.40 0.86 16
9 N -0.75 -9.09 5.12 -57.05 -0.29 -9.38 16
10 C 0.69 12.20 8.30 -86.91 -0.72 11.48 16
11 O -0.58 -12.80 13.56 5.29 0.07 -12.72 16
12 N -0.67 -11.62 5.32 -14.10 -0.08 -11.70 16
13 C 0.01 0.14 6.33 -83.57 -0.53 -0.39 16
14 C -0.10 -2.17 9.89 -39.79 -0.39 -2.56 16
15 C -0.21 -5.22 9.74 -39.26 -0.38 -5.61 16
16 C 0.09 2.46 5.19 -106.80 -0.55 1.91 16
17 C -0.53 -14.23 8.94 -37.85 -0.34 -14.57 16
18 H 0.07 1.95 7.97 -52.49 -0.42 1.53 16
19 C 0.04 0.99 4.88 -17.34 -0.08 0.91 16
20 N -0.80 -22.01 12.49 55.54 0.69 -21.31 16
21 Si 1.07 22.09 30.00 -169.99 -5.10 16.99 16
22 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16
23 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16
24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16
25 C -0.20 -5.43 8.00 -39.26 -0.31 -5.75 16
26 C -0.07 -1.75 8.58 -39.79 -0.34 -2.09 16
27 C -0.11 -0.88 5.93 -24.73 -0.15 -1.02 16
28 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16
29 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16
30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16
31 H 0.08 0.63 7.80 -51.93 -0.40 0.22 16
32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
33 H 0.07 0.79 8.04 -51.93 -0.42 0.38 16
34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16
35 H 0.39 3.56 8.55 -40.82 -0.35 3.21 16
36 H 0.39 5.23 8.82 -40.82 -0.36 4.87 16
37 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16
38 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16
39 H 0.30 8.62 6.96 -40.82 -0.28 8.34 16
40 H 0.10 2.88 6.86 -52.49 -0.36 2.52 16
41 H 0.11 2.70 6.23 -52.49 -0.33 2.37 16
42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
43 H 0.08 0.66 7.94 -51.93 -0.41 0.25 16
LS Contribution 365.12 15.07 5.50 5.50
Total: -1.00 -31.48 365.12 -11.21 -42.70
By element:
Atomic # 1 Polarization: 19.63 SS G_CDS: -6.33 Total: 13.30 kcal
Atomic # 6 Polarization: -15.55 SS G_CDS: -3.35 Total: -18.91 kcal
Atomic # 7 Polarization: -42.72 SS G_CDS: 0.33 Total: -42.39 kcal
Atomic # 8 Polarization: -12.80 SS G_CDS: 0.07 Total: -12.72 kcal
Atomic # 14 Polarization: 22.09 SS G_CDS: -5.10 Total: 16.99 kcal
Atomic # 16 Polarization: -2.14 SS G_CDS: -2.33 Total: -4.46 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -31.48 -11.21 -42.70 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000743082578.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.077 kcal
(2) G-P(sol) polarization free energy of solvation -31.483 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.406 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.619 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds