Wall clock time and date at job start Tue Mar 31 2020 12:49:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81398 * 1
3 3 C 1.81400 * 103.00265 * 2 1
4 4 H 1.08999 * 110.43087 * 303.90731 * 3 2 1
5 5 C 1.54262 * 110.48531 * 66.45453 * 3 2 1
6 6 C 1.53875 * 106.59793 * 142.42283 * 5 3 2
7 7 C 1.54267 * 106.59927 * 359.97438 * 6 5 3
8 8 H 1.09003 * 110.48410 * 95.20594 * 7 6 5
9 9 N 1.46500 * 110.48548 * 217.71306 * 7 6 5
10 10 C 1.34772 * 119.99886 * 273.54435 * 9 7 6
11 11 O 1.21583 * 120.00528 * 0.02562 * 10 9 7
12 12 N 1.34786 * 120.00207 * 180.02562 * 10 9 7
13 13 C 1.39239 * 120.00198 * 184.98368 * 12 10 9
14 14 C 1.39478 * 119.83232 * 211.52169 * 13 12 10
15 15 C 1.36377 * 120.16663 * 179.97438 * 14 13 12
16 16 C 1.40865 * 119.82671 * 359.97438 * 15 14 13
17 17 C 1.41164 * 120.15859 * 180.02562 * 16 15 14
18 18 H 1.08002 * 119.99846 * 330.42348 * 17 16 15
19 19 C 1.39895 * 119.99625 * 150.43215 * 17 16 15
20 20 N 1.30874 * 120.00198 * 333.83894 * 19 17 16
21 21 Si 1.86801 * 119.99696 * 153.84679 * 19 17 16
22 22 H 1.48503 * 109.47243 * 89.99772 * 21 19 17
23 23 H 1.48499 * 109.47596 * 329.99534 * 21 19 17
24 24 H 1.48506 * 109.46938 * 209.99261 * 21 19 17
25 25 C 1.40862 * 119.67609 * 0.27848 * 16 15 14
26 26 C 1.36378 * 119.82689 * 359.43950 * 25 16 15
27 27 C 1.54884 * 104.19447 * 336.39242 * 7 6 5
28 28 H 1.09003 * 109.46887 * 300.00571 * 1 2 3
29 29 H 1.08999 * 109.46717 * 59.99996 * 1 2 3
30 30 H 1.08998 * 109.47114 * 180.02562 * 1 2 3
31 31 H 1.08993 * 110.03494 * 23.13750 * 5 3 2
32 32 H 1.09000 * 110.07272 * 261.72774 * 5 3 2
33 33 H 1.09002 * 110.03524 * 240.71264 * 6 5 3
34 34 H 1.09001 * 110.07612 * 119.30280 * 6 5 3
35 35 H 0.96998 * 119.99756 * 93.54686 * 9 7 6
36 36 H 0.96997 * 119.99316 * 4.98096 * 12 10 9
37 37 H 1.07995 * 119.91672 * 359.95527 * 14 13 12
38 38 H 1.08004 * 120.08250 * 179.97438 * 15 14 13
39 39 H 0.97002 * 120.00223 * 354.21095 * 20 19 17
40 40 H 1.08002 * 120.08872 * 179.72062 * 25 16 15
41 41 H 1.08000 * 119.91278 * 180.27009 * 26 25 16
42 42 H 1.09004 * 110.75786 * 156.25911 * 27 7 6
43 43 H 1.09005 * 110.75444 * 279.62561 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2221 1.7675 0.0000
4 1 1.7525 2.2664 -0.8477
5 6 1.7811 2.4234 1.3248
6 6 2.8643 3.4548 1.6865
7 6 3.9260 3.3891 0.5693
8 1 3.7331 4.1515 -0.1855
9 7 5.2700 3.5521 1.1290
10 6 5.7799 4.7866 1.3088
11 8 5.1245 5.7651 1.0069
12 7 7.0167 4.9366 1.8233
13 6 7.5034 6.2101 2.1059
14 6 8.8692 6.4711 1.9958
15 6 9.3532 7.7162 2.2705
16 6 8.4699 8.7399 2.6657
17 6 8.9634 10.0313 2.9511
18 1 9.9658 10.1539 3.3339
19 6 8.1538 11.1522 2.7383
20 7 7.1984 11.1093 1.8449
21 14 8.4365 12.7102 3.7294
22 1 9.4037 13.5822 3.0156
23 1 8.9814 12.3556 5.0645
24 1 7.1491 13.4315 3.8957
25 6 7.0927 8.4672 2.7797
26 6 6.6226 7.2188 2.4962
27 6 3.7574 1.9718 -0.0321
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0276 0.0005
31 1 1.7070 1.6693 2.1083
32 1 0.8203 2.9212 1.1940
33 1 3.3159 3.2012 2.6456
34 1 2.4299 4.4535 1.7310
35 1 5.7928 2.7715 1.3702
36 1 7.5675 4.1572 1.9967
37 1 9.5450 5.6853 1.6927
38 1 10.4111 7.9167 2.1852
39 1 7.1046 10.3321 1.2720
40 1 6.4101 9.2459 3.0865
41 1 5.5664 7.0093 2.5789
42 1 4.1299 1.9398 -1.0560
43 1 4.2595 1.2276 0.5861
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000743082578.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:49:47
Heat of formation + Delta-G solvation = -42.138976 kcal
Electronic energy + Delta-G solvation = -23666.893151 eV
Core-core repulsion = 20222.328535 eV
Total energy + Delta-G solvation = -3444.564616 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.56730 -39.78756 -38.75167 -36.35832 -35.07466 -34.39917 -31.57102 -30.67616
-30.00936 -29.75185 -28.42543 -26.45182 -23.62837 -23.05258 -22.16282 -21.77438
-21.20981 -19.81359 -19.39093 -18.42957 -17.63375 -16.99786 -16.55121 -16.31888
-16.20601 -15.81818 -15.62066 -15.14031 -14.80063 -14.56710 -14.47912 -14.33279
-14.27238 -14.13017 -13.90270 -13.30544 -13.20261 -12.97726 -12.85674 -12.71181
-12.59322 -12.23308 -12.01267 -11.97095 -11.90255 -11.63717 -11.61468 -11.18528
-10.96267 -10.79043 -10.60276 -10.13205 -9.66465 -9.20647 -8.85231 -8.67341
-6.34833 0.70201 0.79108 0.96268 1.50239 1.60264 1.62135 1.73740
1.80539 2.15976 2.35582 2.73339 3.25698 3.40811 3.55553 3.60416
3.82739 4.23498 4.28519 4.30393 4.33085 4.34880 4.35763 4.37845
4.39524 4.48413 4.75984 4.77918 4.90182 4.96316 4.99662 5.00804
5.06085 5.12434 5.20597 5.29569 5.44867 5.54337 5.59290 5.77458
5.85020 5.97161 6.15309 6.27947 6.39723 6.79629 6.97946 7.13634
7.63648 8.06867
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.031899 B = 0.002166 C = 0.002066
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 877.564584 B =12924.529926 C =13550.054132
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 S -0.287 6.287
3 C -0.051 4.051
4 H 0.099 0.901
5 C -0.108 4.108
6 C -0.132 4.132
7 C 0.164 3.836
8 H 0.073 0.927
9 N -0.720 5.720
10 C 0.692 3.308
11 O -0.625 6.625
12 N -0.657 5.657
13 C 0.029 3.971
14 C -0.093 4.093
15 C -0.219 4.219
16 C 0.061 3.939
17 C -0.561 4.561
18 H 0.076 0.924
19 C -0.001 4.001
20 N -0.824 5.824
21 Si 1.119 2.881
22 H -0.258 1.258
23 H -0.262 1.262
24 H -0.274 1.274
25 C -0.220 4.220
26 C -0.086 4.086
27 C -0.093 4.093
28 H 0.084 0.916
29 H 0.083 0.917
30 H 0.110 0.890
31 H 0.084 0.916
32 H 0.076 0.924
33 H 0.069 0.931
34 H 0.051 0.949
35 H 0.413 0.587
36 H 0.416 0.584
37 H 0.139 0.861
38 H 0.110 0.890
39 H 0.278 0.722
40 H 0.078 0.922
41 H 0.098 0.902
42 H 0.089 0.911
43 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.659 -22.171 -2.194 24.283
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.284 4.284
2 S -0.059 6.059
3 C -0.180 4.180
4 H 0.117 0.883
5 C -0.147 4.147
6 C -0.172 4.172
7 C 0.057 3.943
8 H 0.091 0.909
9 N -0.377 5.377
10 C 0.393 3.607
11 O -0.505 6.505
12 N -0.305 5.305
13 C -0.065 4.065
14 C -0.114 4.114
15 C -0.239 4.239
16 C 0.058 3.942
17 C -0.590 4.590
18 H 0.095 0.905
19 C -0.216 4.216
20 N -0.448 5.448
21 Si 0.936 3.064
22 H -0.182 1.182
23 H -0.186 1.186
24 H -0.199 1.199
25 C -0.240 4.240
26 C -0.107 4.107
27 C -0.132 4.132
28 H 0.103 0.897
29 H 0.102 0.898
30 H 0.129 0.871
31 H 0.103 0.897
32 H 0.094 0.906
33 H 0.088 0.912
34 H 0.070 0.930
35 H 0.250 0.750
36 H 0.253 0.747
37 H 0.156 0.844
38 H 0.128 0.872
39 H 0.089 0.911
40 H 0.096 0.904
41 H 0.117 0.883
42 H 0.108 0.892
43 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -10.250 -20.754 -2.275 23.258
hybrid contribution 0.014 -0.883 -0.260 0.921
sum -10.236 -21.637 -2.535 24.070
Atomic orbital electron populations
1.23442 0.91802 1.07338 1.05786 1.86931 1.10194 1.10837 1.97955
1.23884 0.99345 0.93362 1.01425 0.88280 1.22443 0.98474 0.97906
0.95908 1.22526 0.96412 0.99183 0.99126 1.21623 0.80286 0.97553
0.94861 0.90926 1.44904 1.18286 1.05559 1.68918 1.16211 0.81877
0.84252 0.78375 1.90917 1.61646 1.39613 1.58311 1.41850 1.15516
1.07312 1.65836 1.16974 0.92414 0.85500 1.11586 1.20441 0.93147
0.96965 1.00811 1.20822 0.98966 0.94227 1.09845 1.18028 0.91890
0.94426 0.89857 1.20656 1.03136 0.92515 1.42668 0.90546 1.28477
0.90755 1.06792 0.95543 1.70563 1.28826 1.32070 1.13300 0.83013
0.77657 0.70305 0.75461 1.18244 1.18604 1.19884 1.20680 0.96088
0.96217 1.11019 1.20463 0.98220 0.93380 0.98603 1.22480 0.93342
0.94603 1.02786 0.89696 0.89761 0.87142 0.89749 0.90567 0.91190
0.93019 0.74981 0.74659 0.84366 0.87171 0.91065 0.90363 0.88350
0.89198 0.88738
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.03 10.62 113.37 1.20 0.17 16
2 S -0.29 -4.08 21.66 -56.49 -1.22 -5.31 16
3 C -0.05 -0.70 3.38 31.68 0.11 -0.60 16
4 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16
5 C -0.11 -1.56 6.25 31.32 0.20 -1.36 16
6 C -0.13 -2.69 6.53 31.32 0.20 -2.48 16
7 C 0.16 3.42 3.16 46.06 0.15 3.56 16
8 H 0.07 1.91 7.66 -2.39 -0.02 1.89 16
9 N -0.72 -16.19 5.12 -452.69 -2.32 -18.51 16
10 C 0.69 23.58 8.30 179.05 1.49 25.07 16
11 O -0.62 -28.24 13.56 -3.98 -0.05 -28.29 16
12 N -0.66 -21.42 5.32 -316.78 -1.69 -23.11 16
13 C 0.03 1.27 6.33 38.56 0.24 1.52 16
14 C -0.09 -3.87 9.89 22.13 0.22 -3.65 16
15 C -0.22 -10.55 9.74 22.48 0.22 -10.33 16
16 C 0.06 3.37 5.19 -21.28 -0.11 3.26 16
17 C -0.56 -31.28 8.94 23.39 0.21 -31.07 16
18 H 0.08 4.08 7.97 -2.91 -0.02 4.06 16
19 C 0.00 -0.04 4.88 85.24 0.42 0.37 16
20 N -0.82 -47.87 12.49 21.82 0.27 -47.60 16
21 Si 1.12 45.20 30.00 68.60 2.06 47.26 16
22 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16
23 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16
24 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16
25 C -0.22 -12.33 8.00 22.48 0.18 -12.15 16
26 C -0.09 -4.41 8.58 22.13 0.19 -4.22 16
27 C -0.09 -1.34 5.93 31.89 0.19 -1.15 16
28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16
29 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16
30 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16
31 H 0.08 1.16 7.80 -2.39 -0.02 1.14 16
32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
33 H 0.07 1.45 8.04 -2.39 -0.02 1.43 16
34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16
35 H 0.41 6.13 8.55 -92.71 -0.79 5.34 16
36 H 0.42 9.50 8.82 -92.71 -0.82 8.68 16
37 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16
38 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16
39 H 0.28 17.08 6.96 -92.71 -0.65 16.44 16
40 H 0.08 4.67 6.86 -2.91 -0.02 4.65 16
41 H 0.10 5.16 6.23 -2.91 -0.02 5.14 16
42 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16
43 H 0.09 1.19 7.94 -2.38 -0.02 1.17 16
Total: -1.00 -72.48 365.12 1.70 -70.78
By element:
Atomic # 1 Polarization: 38.28 SS G_CDS: -0.45 Total: 37.83 kcal
Atomic # 6 Polarization: -38.15 SS G_CDS: 5.10 Total: -33.05 kcal
Atomic # 7 Polarization: -85.49 SS G_CDS: -3.73 Total: -89.22 kcal
Atomic # 8 Polarization: -28.24 SS G_CDS: -0.05 Total: -28.29 kcal
Atomic # 14 Polarization: 45.20 SS G_CDS: 2.06 Total: 47.26 kcal
Atomic # 16 Polarization: -4.08 SS G_CDS: -1.22 Total: -5.31 kcal
Total: -72.48 1.70 -70.78 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000743082578.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.646 kcal
(2) G-P(sol) polarization free energy of solvation -72.480 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.834 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.785 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.139 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds