Wall clock time and date at job start Tue Mar 31 2020 12:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34708 * 117.00047 * 2 1 4 4 O 1.21472 * 120.00302 * 359.97438 * 3 2 1 5 5 C 1.47731 * 119.99804 * 180.02562 * 3 2 1 6 6 C 1.39647 * 120.14898 * 5.67693 * 5 3 2 7 7 C 1.37925 * 119.84476 * 180.32129 * 6 5 3 8 8 C 1.38389 * 120.15112 * 359.65725 * 7 6 5 9 9 C 1.38351 * 120.30296 * 359.97438 * 8 7 6 10 10 C 1.37971 * 120.14871 * 0.05191 * 9 8 7 11 11 C 1.50691 * 120.07513 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47271 * 98.60850 * 11 10 9 13 13 C 1.50704 * 109.47230 * 180.02562 * 12 11 10 14 14 O 1.20828 * 119.99787 * 359.97438 * 13 12 11 15 15 O 1.34223 * 119.99856 * 180.02562 * 13 12 11 16 16 C 1.45199 * 117.00096 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47446 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.47261 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47340 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99812 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00238 * 180.02562 * 19 18 17 22 22 N 1.31508 * 119.99805 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99968 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47403 * 59.99605 * 23 21 19 25 25 H 1.48497 * 109.46863 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46757 * 299.99613 * 23 21 19 27 27 H 1.09001 * 109.47047 * 60.00205 * 1 2 3 28 28 H 1.09002 * 109.47258 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46707 * 300.00326 * 1 2 3 30 30 H 1.08003 * 120.08061 * 359.97438 * 6 5 3 31 31 H 1.07995 * 119.92645 * 179.67581 * 7 6 5 32 32 H 1.07998 * 119.85112 * 180.02562 * 8 7 6 33 33 H 1.07993 * 119.92235 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.47523 * 218.60715 * 11 10 9 35 35 H 1.09007 * 109.47277 * 338.61041 * 11 10 9 36 36 H 1.08996 * 109.47189 * 300.00064 * 12 11 10 37 37 H 1.08998 * 109.46709 * 60.00095 * 12 11 10 38 38 H 1.08996 * 109.47508 * 300.00668 * 16 15 13 39 39 H 1.09004 * 109.46756 * 60.00358 * 16 15 13 40 40 H 1.08996 * 109.47683 * 300.01015 * 17 16 15 41 41 H 1.09004 * 109.46480 * 60.00642 * 17 16 15 42 42 H 1.08995 * 109.47310 * 300.00588 * 18 17 16 43 43 H 1.09004 * 109.46859 * 60.00862 * 18 17 16 44 44 H 0.97008 * 119.99805 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3021 0.1142 -0.1206 7 6 5.6791 0.1930 -0.1137 8 6 6.3045 1.4218 0.0046 9 6 5.5544 2.5790 0.1162 10 6 4.1762 2.5146 0.1112 11 6 3.3609 3.7759 0.2335 12 6 2.9020 4.2233 -1.1559 13 6 2.0871 5.4851 -1.0338 14 8 1.8929 5.9759 0.0531 15 8 1.5763 6.0631 -2.1322 16 6 0.8014 7.2758 -1.9393 17 6 0.3059 7.7854 -3.2942 18 6 -0.5101 9.0635 -3.0909 19 6 -0.9987 9.5651 -4.4253 20 1 -0.7523 9.0259 -5.3281 21 6 -1.7603 10.7124 -4.4938 22 7 -2.0608 11.3687 -3.3945 23 14 -2.3666 11.3337 -6.1478 24 1 -3.2203 10.2979 -6.7831 25 1 -3.1584 12.5744 -5.9505 26 1 -1.2034 11.6225 -7.0246 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8899 30 1 3.8153 -0.8455 -0.2129 31 1 6.2706 -0.7064 -0.2011 32 1 7.3830 1.4779 0.0090 33 1 6.0489 3.5347 0.2078 34 1 2.4895 3.5861 0.8601 35 1 3.9694 4.5596 0.6849 36 1 3.7733 4.4132 -1.7827 37 1 2.2936 3.4396 -1.6073 38 1 -0.0525 7.0629 -1.2963 39 1 1.4273 8.0363 -1.4723 40 1 1.1600 7.9983 -3.9369 41 1 -0.3198 7.0249 -3.7615 42 1 -1.3642 8.8510 -2.4481 43 1 0.1160 9.8238 -2.6238 44 1 -2.5969 12.1757 -3.4426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758919955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:15 Heat of formation + Delta-G solvation = -164.572456 kcal Electronic energy + Delta-G solvation = -25744.181373 eV Core-core repulsion = 21819.262021 eV Total energy + Delta-G solvation = -3924.919352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.14731 -40.06423 -39.24130 -36.90540 -36.39888 -34.15601 -33.92572 -31.96436 -31.68462 -30.34833 -28.08289 -27.13342 -25.39392 -24.17687 -23.11391 -22.08808 -21.08371 -20.40555 -20.10657 -18.30974 -17.50295 -17.20005 -16.73179 -16.50568 -16.44094 -16.05360 -15.69221 -15.56662 -14.98030 -14.45852 -14.43838 -13.96100 -13.81776 -13.54060 -13.27808 -13.14353 -12.83581 -12.46455 -12.23255 -12.16008 -12.09159 -11.98960 -11.73116 -11.53396 -11.36156 -10.98188 -10.91998 -10.64895 -10.57072 -10.39030 -10.28264 -10.20959 -9.65642 -9.49902 -9.46822 -9.23361 -9.13308 -8.35716 -6.00536 -4.03504 0.27627 0.86607 2.19292 2.33559 2.52149 3.01032 3.34332 3.34703 3.38373 3.41311 4.24450 4.33370 4.43918 4.46128 4.55425 4.81056 4.81971 4.84452 4.90998 4.94361 5.06100 5.16202 5.22484 5.34779 5.35140 5.47430 5.50897 5.64653 5.67772 5.72862 5.78842 5.88354 5.95998 6.04691 6.09405 6.26031 6.40364 6.60148 6.61108 6.94366 7.05314 7.42830 7.63841 7.75650 7.97844 8.09234 8.39549 9.02522 9.60399 11.10896 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.019871 B = 0.002086 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.724561 B =13420.530363 C =14130.618823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.501 3.499 4 O -0.488 6.488 5 C -0.126 4.126 6 C -0.060 4.060 7 C -0.139 4.139 8 C -0.080 4.080 9 C -0.127 4.127 10 C -0.014 4.014 11 C -0.081 4.081 12 C -0.099 4.099 13 C 0.462 3.538 14 O -0.514 6.514 15 O -0.361 6.361 16 C 0.068 3.932 17 C -0.109 4.109 18 C 0.024 3.976 19 C -0.521 4.521 20 H 0.057 0.943 21 C 0.056 3.944 22 N -0.895 5.895 23 Si 0.896 3.104 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.211 -27.777 8.687 33.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.346 3.654 4 O -0.376 6.376 5 C -0.127 4.127 6 C -0.078 4.078 7 C -0.157 4.157 8 C -0.098 4.098 9 C -0.145 4.145 10 C -0.015 4.015 11 C -0.117 4.117 12 C -0.136 4.136 13 C 0.305 3.695 14 O -0.402 6.402 15 O -0.277 6.277 16 C -0.005 4.005 17 C -0.146 4.146 18 C -0.013 4.013 19 C -0.559 4.559 20 H 0.075 0.925 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.724 3.276 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.779 -27.138 9.060 32.673 hybrid contribution -0.647 0.508 -0.753 1.115 sum 15.133 -26.630 8.307 31.735 Atomic orbital electron populations 1.23318 0.75553 1.03810 1.03055 1.86512 1.23856 1.32659 1.84418 1.21244 0.89143 0.81625 0.73419 1.90888 1.66868 1.35216 1.44661 1.18979 0.89112 0.94606 1.10027 1.21459 0.93983 0.97743 0.94619 1.21174 0.94314 0.98273 1.01891 1.21473 1.00486 0.92361 0.95480 1.21122 0.92491 0.99379 1.01533 1.19992 0.93967 0.93569 0.93928 1.20676 1.00760 0.93214 0.97094 1.21186 0.99808 0.93654 0.98974 1.23470 0.77861 0.85512 0.82621 1.90639 1.57101 1.63951 1.28539 1.86487 1.63319 1.41387 1.36528 1.23462 0.93776 0.82200 1.01030 1.21754 1.00174 0.99840 0.92866 1.19048 0.94510 0.90128 0.97634 1.21142 1.32548 1.09234 0.93020 0.92498 1.25035 0.96169 0.96705 0.96615 1.69960 1.38396 1.17916 1.27114 0.86598 0.78867 0.78119 0.84064 1.20200 1.21279 1.20185 0.91490 0.87957 0.91636 0.84425 0.85097 0.85161 0.84679 0.87449 0.90096 0.88313 0.87605 0.91618 0.91626 0.92204 0.92215 0.96250 0.96245 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.32 16 2 O -0.36 -3.27 9.83 -40.51 -0.40 -3.67 16 3 C 0.50 5.40 7.76 34.61 0.27 5.67 16 4 O -0.49 -6.55 11.38 -19.24 -0.22 -6.77 16 5 C -0.13 -1.17 5.87 -104.98 -0.62 -1.79 16 6 C -0.06 -0.42 9.62 -39.17 -0.38 -0.79 16 7 C -0.14 -0.77 10.03 -39.64 -0.40 -1.17 16 8 C -0.08 -0.45 10.04 -39.48 -0.40 -0.85 16 9 C -0.13 -0.91 9.66 -39.64 -0.38 -1.29 16 10 C -0.01 -0.13 5.17 -104.21 -0.54 -0.67 16 11 C -0.08 -0.91 3.90 -27.88 -0.11 -1.02 16 12 C -0.10 -1.22 5.32 -27.88 -0.15 -1.36 16 13 C 0.46 7.74 7.96 36.01 0.29 8.03 16 14 O -0.51 -9.92 15.73 -18.75 -0.29 -10.21 16 15 O -0.36 -6.60 10.22 -39.24 -0.40 -7.00 16 16 C 0.07 1.36 5.47 37.16 0.20 1.56 16 17 C -0.11 -2.37 5.53 -26.73 -0.15 -2.52 16 18 C 0.02 0.63 4.97 -27.88 -0.14 0.50 16 19 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 20 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -27.29 13.29 55.43 0.74 -26.55 16 23 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.14 0.76 7.63 -52.48 -0.40 0.36 16 31 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 32 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 33 H 0.14 0.76 8.04 -52.49 -0.42 0.33 16 34 H 0.11 1.47 5.92 -51.93 -0.31 1.16 16 35 H 0.08 0.87 7.98 -51.93 -0.41 0.45 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.11 1.32 6.57 -51.93 -0.34 0.98 16 38 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 39 H 0.07 1.30 8.13 -51.93 -0.42 0.87 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 LS Contribution 377.44 15.07 5.69 5.69 Total: -1.00 -34.49 377.44 -8.25 -42.73 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -6.50 Total: -2.93 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.84 Total: -8.17 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.74 Total: -26.55 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -1.31 Total: -27.65 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.49 -8.25 -42.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758919955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.839 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds