Wall clock time and date at job start Tue Mar 31 2020 12:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34708 * 117.00047 * 2 1 4 4 O 1.21472 * 120.00302 * 359.97438 * 3 2 1 5 5 C 1.47731 * 119.99804 * 180.02562 * 3 2 1 6 6 C 1.39647 * 120.14898 * 5.67693 * 5 3 2 7 7 C 1.37925 * 119.84476 * 180.32129 * 6 5 3 8 8 C 1.38389 * 120.15112 * 359.65725 * 7 6 5 9 9 C 1.38351 * 120.30296 * 359.97438 * 8 7 6 10 10 C 1.37971 * 120.14871 * 0.05191 * 9 8 7 11 11 C 1.50691 * 120.07513 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47271 * 98.60850 * 11 10 9 13 13 C 1.50704 * 109.47230 * 180.02562 * 12 11 10 14 14 O 1.20828 * 119.99787 * 359.97438 * 13 12 11 15 15 O 1.34223 * 119.99856 * 180.02562 * 13 12 11 16 16 C 1.45199 * 117.00096 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47446 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.47261 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47340 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99812 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00238 * 180.02562 * 19 18 17 22 22 N 1.31508 * 119.99805 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99968 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47403 * 59.99605 * 23 21 19 25 25 H 1.48497 * 109.46863 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46757 * 299.99613 * 23 21 19 27 27 H 1.09001 * 109.47047 * 60.00205 * 1 2 3 28 28 H 1.09002 * 109.47258 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46707 * 300.00326 * 1 2 3 30 30 H 1.08003 * 120.08061 * 359.97438 * 6 5 3 31 31 H 1.07995 * 119.92645 * 179.67581 * 7 6 5 32 32 H 1.07998 * 119.85112 * 180.02562 * 8 7 6 33 33 H 1.07993 * 119.92235 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.47523 * 218.60715 * 11 10 9 35 35 H 1.09007 * 109.47277 * 338.61041 * 11 10 9 36 36 H 1.08996 * 109.47189 * 300.00064 * 12 11 10 37 37 H 1.08998 * 109.46709 * 60.00095 * 12 11 10 38 38 H 1.08996 * 109.47508 * 300.00668 * 16 15 13 39 39 H 1.09004 * 109.46756 * 60.00358 * 16 15 13 40 40 H 1.08996 * 109.47683 * 300.01015 * 17 16 15 41 41 H 1.09004 * 109.46480 * 60.00642 * 17 16 15 42 42 H 1.08995 * 109.47310 * 300.00588 * 18 17 16 43 43 H 1.09004 * 109.46859 * 60.00862 * 18 17 16 44 44 H 0.97008 * 119.99805 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3021 0.1142 -0.1206 7 6 5.6791 0.1930 -0.1137 8 6 6.3045 1.4218 0.0046 9 6 5.5544 2.5790 0.1162 10 6 4.1762 2.5146 0.1112 11 6 3.3609 3.7759 0.2335 12 6 2.9020 4.2233 -1.1559 13 6 2.0871 5.4851 -1.0338 14 8 1.8929 5.9759 0.0531 15 8 1.5763 6.0631 -2.1322 16 6 0.8014 7.2758 -1.9393 17 6 0.3059 7.7854 -3.2942 18 6 -0.5101 9.0635 -3.0909 19 6 -0.9987 9.5651 -4.4253 20 1 -0.7523 9.0259 -5.3281 21 6 -1.7603 10.7124 -4.4938 22 7 -2.0608 11.3687 -3.3945 23 14 -2.3666 11.3337 -6.1478 24 1 -3.2203 10.2979 -6.7831 25 1 -3.1584 12.5744 -5.9505 26 1 -1.2034 11.6225 -7.0246 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8899 30 1 3.8153 -0.8455 -0.2129 31 1 6.2706 -0.7064 -0.2011 32 1 7.3830 1.4779 0.0090 33 1 6.0489 3.5347 0.2078 34 1 2.4895 3.5861 0.8601 35 1 3.9694 4.5596 0.6849 36 1 3.7733 4.4132 -1.7827 37 1 2.2936 3.4396 -1.6073 38 1 -0.0525 7.0629 -1.2963 39 1 1.4273 8.0363 -1.4723 40 1 1.1600 7.9983 -3.9369 41 1 -0.3198 7.0249 -3.7615 42 1 -1.3642 8.8510 -2.4481 43 1 0.1160 9.8238 -2.6238 44 1 -2.5969 12.1757 -3.4426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758919955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:14 Heat of formation + Delta-G solvation = -182.721529 kcal Electronic energy + Delta-G solvation = -25744.968376 eV Core-core repulsion = 21819.262021 eV Total energy + Delta-G solvation = -3925.706355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.94212 -41.41258 -39.86542 -38.00309 -37.57426 -35.95650 -35.01281 -33.70350 -32.51463 -31.17660 -29.08019 -28.63232 -26.47326 -25.10300 -24.62280 -22.81962 -22.20203 -21.96810 -21.31835 -19.04157 -18.79392 -18.47672 -17.99586 -17.85838 -17.54615 -17.17539 -16.56423 -16.50639 -16.42107 -15.74143 -15.54446 -14.87960 -14.75305 -14.52954 -14.23315 -14.19686 -14.02508 -13.82385 -13.64109 -13.59497 -13.07491 -12.94958 -12.80734 -12.67076 -12.54349 -12.40243 -12.32945 -12.09316 -12.01647 -11.83117 -11.74749 -11.45093 -11.43355 -11.26444 -11.13666 -10.58472 -10.02585 -9.80001 -8.22925 -6.35060 -0.32454 0.34730 1.15366 1.40186 1.44162 1.49957 1.51941 1.65748 1.70026 2.40544 2.77102 3.10496 3.49945 3.63492 3.81763 3.86733 3.95344 4.03250 4.03563 4.14112 4.21933 4.28614 4.30444 4.37115 4.42244 4.46334 4.49681 4.68061 4.75805 4.79935 4.84079 4.88400 4.99209 5.04422 5.08534 5.31793 5.32706 5.41141 5.49492 5.51193 5.56256 5.60431 5.77621 5.91410 6.17030 6.66336 6.68945 6.80375 7.34331 8.89202 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.019871 B = 0.002086 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.724561 B =13420.530363 C =14130.618823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.356 6.356 3 C 0.497 3.503 4 O -0.525 6.525 5 C -0.147 4.147 6 C -0.061 4.061 7 C -0.132 4.132 8 C -0.073 4.073 9 C -0.130 4.130 10 C -0.031 4.031 11 C -0.073 4.073 12 C -0.088 4.088 13 C 0.459 3.541 14 O -0.543 6.543 15 O -0.361 6.361 16 C 0.077 3.923 17 C -0.093 4.093 18 C 0.026 3.974 19 C -0.545 4.545 20 H 0.065 0.935 21 C -0.003 4.003 22 N -0.934 5.934 23 Si 0.972 3.028 24 H -0.266 1.266 25 H -0.283 1.283 26 H -0.264 1.264 27 H 0.058 0.942 28 H 0.136 0.864 29 H 0.057 0.943 30 H 0.150 0.850 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.064 0.936 42 H -0.006 1.006 43 H -0.002 1.002 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.401 -29.815 7.242 35.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.273 6.273 3 C 0.344 3.656 4 O -0.417 6.417 5 C -0.148 4.148 6 C -0.079 4.079 7 C -0.149 4.149 8 C -0.090 4.090 9 C -0.148 4.148 10 C -0.031 4.031 11 C -0.110 4.110 12 C -0.125 4.125 13 C 0.304 3.696 14 O -0.433 6.433 15 O -0.278 6.278 16 C 0.003 3.997 17 C -0.131 4.131 18 C -0.011 4.011 19 C -0.582 4.582 20 H 0.084 0.916 21 C -0.201 4.201 22 N -0.574 5.574 23 Si 0.796 3.204 24 H -0.191 1.191 25 H -0.208 1.208 26 H -0.189 1.189 27 H 0.077 0.923 28 H 0.154 0.846 29 H 0.076 0.924 30 H 0.168 0.832 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.167 0.833 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.147 0.853 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.013 0.987 43 H 0.016 0.984 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.986 -29.217 7.614 35.144 hybrid contribution -1.275 1.040 -0.226 1.660 sum 16.711 -28.178 7.388 33.583 Atomic orbital electron populations 1.23531 0.74627 1.05771 1.02316 1.86510 1.24825 1.31924 1.84002 1.21697 0.89991 0.81463 0.72416 1.90872 1.67784 1.36338 1.46659 1.19060 0.88272 0.95645 1.11785 1.21669 0.94767 0.97359 0.94096 1.21575 0.93773 0.99552 1.00022 1.21865 1.01988 0.91628 0.93543 1.21341 0.91518 1.00900 1.01064 1.19860 0.94756 0.92423 0.96072 1.20513 1.00040 0.94629 0.95841 1.21303 0.99938 0.90854 1.00406 1.24422 0.77302 0.86153 0.81683 1.90625 1.58224 1.64982 1.29493 1.86484 1.63241 1.40620 1.37422 1.23121 0.93798 0.83123 0.99622 1.21459 0.99862 0.97725 0.94018 1.18932 0.93888 0.91800 0.96482 1.21583 1.32900 1.09790 0.93967 0.91631 1.26052 0.96198 0.96878 1.00934 1.70102 1.39096 1.18441 1.29738 0.85401 0.78617 0.77602 0.78828 1.19064 1.20848 1.18900 0.92279 0.84614 0.92395 0.83207 0.82052 0.82094 0.83304 0.90391 0.89923 0.85256 0.87678 0.92518 0.91766 0.91225 0.91700 0.98713 0.98411 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.57 113.37 1.20 1.63 16 2 O -0.36 -6.49 9.83 -56.18 -0.55 -7.04 16 3 C 0.50 11.04 7.76 70.33 0.55 11.59 16 4 O -0.53 -14.98 11.38 19.93 0.23 -14.76 16 5 C -0.15 -2.63 5.87 -20.10 -0.12 -2.75 16 6 C -0.06 -0.72 9.62 22.54 0.22 -0.50 16 7 C -0.13 -0.98 10.03 22.23 0.22 -0.75 16 8 C -0.07 -0.54 10.04 22.33 0.22 -0.32 16 9 C -0.13 -1.55 9.66 22.23 0.21 -1.34 16 10 C -0.03 -0.55 5.17 -19.60 -0.10 -0.65 16 11 C -0.07 -1.69 3.90 29.85 0.12 -1.58 16 12 C -0.09 -2.15 5.32 29.85 0.16 -2.00 16 13 C 0.46 15.65 7.96 71.24 0.57 16.22 16 14 O -0.54 -21.72 15.73 21.96 0.35 -21.38 16 15 O -0.36 -13.28 10.22 -51.35 -0.52 -13.80 16 16 C 0.08 3.13 5.47 71.98 0.39 3.53 16 17 C -0.09 -4.10 5.53 30.59 0.17 -3.94 16 18 C 0.03 1.43 4.97 29.85 0.15 1.58 16 19 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 20 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 21 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 22 N -0.93 -57.98 13.29 21.45 0.28 -57.70 16 23 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.15 1.32 7.63 -2.91 -0.02 1.30 16 31 H 0.16 0.23 8.06 -2.91 -0.02 0.21 16 32 H 0.16 0.24 8.06 -2.91 -0.02 0.21 16 33 H 0.15 1.29 8.04 -2.91 -0.02 1.26 16 34 H 0.08 2.28 5.92 -2.39 -0.01 2.27 16 35 H 0.08 1.80 7.98 -2.38 -0.02 1.78 16 36 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.11 2.66 6.57 -2.39 -0.02 2.65 16 38 H 0.06 2.39 8.13 -2.39 -0.02 2.37 16 39 H 0.06 2.62 8.13 -2.38 -0.02 2.60 16 40 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.06 2.78 8.14 -2.38 -0.02 2.76 16 42 H -0.01 -0.33 8.14 -2.39 -0.02 -0.34 16 43 H 0.00 -0.15 8.14 -2.38 -0.02 -0.16 16 44 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -76.56 377.44 7.45 -69.11 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.99 Total: 9.15 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 4.65 Total: -10.37 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.28 Total: -57.70 kcal Atomic # 8 Polarization: -56.48 SS G_CDS: -0.51 Total: -56.98 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -76.56 7.45 -69.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758919955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.612 kcal (2) G-P(sol) polarization free energy of solvation -76.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds