Wall clock time and date at job start Tue Mar 31 2020 12:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99728 * 2 1 4 4 O 1.42903 * 109.46878 * 134.99713 * 3 2 1 5 5 C 1.35644 * 116.99549 * 179.97438 * 4 3 2 6 6 C 1.38474 * 120.18768 * 359.72863 * 5 4 3 7 7 C 1.38713 * 119.90688 * 179.76725 * 6 5 4 8 8 O 1.35701 * 119.85664 * 180.20983 * 7 6 5 9 9 C 1.42901 * 117.00213 * 180.27403 * 8 7 6 10 10 C 1.39196 * 120.28737 * 0.48756 * 7 6 5 11 11 C 1.36519 * 120.37401 * 359.76528 * 10 7 6 12 12 C 1.39903 * 120.08707 * 0.02562 * 11 10 7 13 13 C 1.47150 * 120.14442 * 179.97438 * 12 11 10 14 14 O 1.21541 * 120.00159 * 180.02562 * 13 12 11 15 15 O 1.34792 * 119.99924 * 0.02562 * 13 12 11 16 16 C 1.45201 * 116.99847 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46690 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.46951 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47260 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99775 * 359.97438 * 19 18 17 21 21 C 1.37880 * 120.00356 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99310 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00222 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47182 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46766 * 119.99798 * 23 21 19 26 26 H 1.48494 * 109.47564 * 240.00065 * 23 21 19 27 27 H 1.07999 * 119.99510 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00340 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.00120 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47060 * 254.99843 * 3 2 1 31 31 H 1.09001 * 109.47380 * 14.99931 * 3 2 1 32 32 H 1.07990 * 120.04516 * 359.97438 * 6 5 4 33 33 H 1.09002 * 109.47093 * 59.99855 * 9 8 7 34 34 H 1.09003 * 109.47364 * 179.97438 * 9 8 7 35 35 H 1.09000 * 109.47141 * 300.00144 * 9 8 7 36 36 H 1.08003 * 119.81008 * 179.75049 * 10 7 6 37 37 H 1.08004 * 119.95827 * 179.97438 * 11 10 7 38 38 H 1.08997 * 109.47460 * 300.00128 * 16 15 13 39 39 H 1.09004 * 109.46859 * 60.00809 * 16 15 13 40 40 H 1.09002 * 109.47444 * 300.00286 * 17 16 15 41 41 H 1.08999 * 109.47022 * 60.00147 * 17 16 15 42 42 H 1.09002 * 109.47118 * 300.00288 * 18 17 16 43 43 H 1.08992 * 109.46972 * 59.99932 * 18 17 16 44 44 H 0.97003 * 119.99359 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9081 2.3430 1.0780 6 6 3.6646 3.4616 0.2990 7 6 4.4644 4.5867 0.4353 8 8 4.2222 5.6840 -0.3255 9 6 5.0870 6.8063 -0.1396 10 6 5.5179 4.5932 1.3451 11 6 5.7716 3.4949 2.1152 12 6 4.9721 2.3532 1.9937 13 6 5.2448 1.1684 2.8228 14 8 4.5489 0.1778 2.7147 15 8 6.2663 1.1818 3.7021 16 6 6.4763 -0.0216 4.4870 17 6 7.6703 0.1812 5.4219 18 6 7.8920 -1.0871 6.2485 19 6 9.0676 -0.8872 7.1698 20 1 9.6034 0.0506 7.1659 21 6 9.4600 -1.9017 8.0171 22 7 8.8078 -3.0438 8.0215 23 14 10.9176 -1.6541 9.1586 24 1 11.4744 -0.2915 8.9621 25 1 10.4748 -1.8089 10.5676 26 1 11.9621 -2.6647 8.8541 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 2.4755 1.4868 -0.9927 31 1 1.3855 2.1161 0.2660 32 1 2.8511 3.4593 -0.4112 33 1 6.1133 6.5152 -0.3636 34 1 4.7845 7.6128 -0.8075 35 1 5.0234 7.1467 0.8940 36 1 6.1382 5.4719 1.4421 37 1 6.5910 3.5070 2.8187 38 1 5.5843 -0.2305 5.0775 39 1 6.6752 -0.8604 3.8198 40 1 8.5625 0.3904 4.8317 41 1 7.4710 1.0199 6.0889 42 1 6.9998 -1.2967 6.8387 43 1 8.0914 -1.9254 5.5812 44 1 9.0840 -3.7577 8.6173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766809780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:49 Heat of formation + Delta-G solvation = -123.660821 kcal Electronic energy + Delta-G solvation = -25709.946478 eV Core-core repulsion = 21786.801187 eV Total energy + Delta-G solvation = -3923.145291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.07417 -39.78448 -39.31399 -36.97974 -36.09093 -34.32759 -33.90252 -31.79206 -31.24976 -30.25971 -27.92614 -27.13022 -26.75004 -24.18254 -23.09767 -22.34019 -20.96689 -20.30110 -20.08289 -19.08829 -17.67590 -17.21150 -16.81827 -16.54186 -16.37780 -16.09754 -15.99337 -15.83637 -15.34248 -14.72439 -14.44865 -14.32180 -13.93234 -13.58187 -13.44296 -12.93327 -12.90326 -12.72759 -12.45723 -12.10691 -12.08150 -11.86855 -11.78503 -11.44380 -11.31670 -11.04600 -10.94691 -10.59778 -10.55659 -10.26167 -10.16179 -9.83073 -9.64448 -9.45670 -9.10952 -9.01223 -8.46593 -8.35991 -6.00584 -4.03282 0.61024 1.06053 1.73212 2.66299 2.67667 3.00117 3.06988 3.31935 3.39219 3.43594 3.57835 4.32978 4.45299 4.45941 4.59935 4.62452 4.69132 4.72280 4.77182 4.90336 4.96002 4.98690 5.06596 5.13854 5.31230 5.35430 5.53119 5.68449 5.68580 5.76222 5.85662 5.97555 6.11491 6.12087 6.22382 6.28469 6.60369 6.61346 6.81632 6.95000 7.04336 7.08442 7.65039 7.76534 7.98354 8.15988 8.39974 9.03357 9.60750 11.10979 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013357 B = 0.002426 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.752147 B =11540.972740 C =13573.601004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.151 4.151 3 C 0.078 3.922 4 O -0.270 6.270 5 C 0.229 3.771 6 C -0.263 4.263 7 C 0.198 3.802 8 O -0.313 6.313 9 C 0.024 3.976 10 C -0.258 4.258 11 C 0.018 3.982 12 C -0.194 4.194 13 C 0.505 3.495 14 O -0.495 6.495 15 O -0.359 6.359 16 C 0.071 3.929 17 C -0.108 4.108 18 C 0.023 3.977 19 C -0.519 4.519 20 H 0.058 0.942 21 C 0.056 3.944 22 N -0.895 5.895 23 Si 0.895 3.105 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.138 0.862 37 H 0.151 0.849 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.555 18.258 -20.621 30.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.169 4.169 3 C 0.004 3.996 4 O -0.181 6.181 5 C 0.181 3.819 6 C -0.282 4.282 7 C 0.152 3.848 8 O -0.225 6.225 9 C -0.071 4.071 10 C -0.277 4.277 11 C 0.000 4.000 12 C -0.196 4.196 13 C 0.349 3.651 14 O -0.384 6.384 15 O -0.276 6.276 16 C -0.002 4.002 17 C -0.146 4.146 18 C -0.014 4.014 19 C -0.558 4.558 20 H 0.076 0.924 21 C -0.146 4.146 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.127 0.873 28 H 0.117 0.883 29 H 0.141 0.859 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.161 0.839 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.156 0.844 37 H 0.169 0.831 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.898 17.604 -20.590 30.447 hybrid contribution 0.840 0.155 0.637 1.066 sum -13.058 17.759 -19.953 29.733 Atomic orbital electron populations 1.23861 0.95340 1.02529 0.99276 1.22654 0.95624 0.97822 1.00778 1.22001 0.88006 0.97363 0.92253 1.86429 1.40890 1.33668 1.57094 1.18596 0.87917 0.85177 0.90238 1.20265 1.06878 0.92718 1.08380 1.18948 0.91739 0.86050 0.88102 1.86025 1.55079 1.22227 1.59156 1.23176 0.94257 0.86739 1.02909 1.20902 1.02207 1.01737 1.02834 1.20923 0.95420 0.89434 0.94204 1.18475 1.01244 0.95887 1.04031 1.20622 0.78700 0.87040 0.78698 1.90875 1.47540 1.33975 1.66003 1.86517 1.48288 1.43503 1.49338 1.23453 1.00451 0.83613 0.92676 1.21753 0.94270 1.02074 0.96481 1.19058 0.97274 0.90871 0.94195 1.21217 1.13934 0.99973 1.20646 0.92396 1.25039 0.96989 0.95211 0.97324 1.69983 1.40424 1.04391 1.38576 0.86495 0.82492 0.78190 0.80585 1.19689 1.20999 1.20997 0.87338 0.88338 0.85883 0.90636 0.91124 0.83852 0.92036 0.87947 0.92034 0.84415 0.83110 0.91593 0.91589 0.92203 0.92199 0.96225 0.96222 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 14.31 29.01 0.42 -0.86 16 2 C -0.15 -1.39 9.89 -36.03 -0.36 -1.75 16 3 C 0.08 0.74 5.15 36.01 0.19 0.92 16 4 O -0.27 -3.72 8.19 -40.54 -0.33 -4.05 16 5 C 0.23 2.99 6.70 -38.69 -0.26 2.73 16 6 C -0.26 -2.74 8.97 -39.32 -0.35 -3.09 16 7 C 0.20 1.94 6.69 -39.05 -0.26 1.67 16 8 O -0.31 -2.63 10.48 -18.81 -0.20 -2.83 16 9 C 0.02 0.11 9.80 101.05 0.99 1.10 16 10 C -0.26 -2.39 8.96 -39.85 -0.36 -2.74 16 11 C 0.02 0.21 9.55 -39.58 -0.38 -0.17 16 12 C -0.19 -2.76 5.89 -104.85 -0.62 -3.38 16 13 C 0.50 8.89 7.88 34.35 0.27 9.16 16 14 O -0.50 -10.02 14.95 -26.63 -0.40 -10.42 16 15 O -0.36 -6.44 9.46 -40.74 -0.39 -6.82 16 16 C 0.07 1.39 5.48 37.16 0.20 1.59 16 17 C -0.11 -2.30 5.53 -26.73 -0.15 -2.45 16 18 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 19 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 23 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H 0.11 0.68 8.06 -52.49 -0.42 0.25 16 28 H 0.10 0.59 7.90 -52.49 -0.41 0.17 16 29 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.08 0.57 7.65 -51.93 -0.40 0.18 16 31 H 0.07 0.54 7.40 -51.93 -0.38 0.16 16 32 H 0.14 1.19 6.31 -52.49 -0.33 0.86 16 33 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 34 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 36 H 0.14 0.89 6.26 -52.48 -0.33 0.56 16 37 H 0.15 1.56 7.60 -52.48 -0.40 1.16 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -34.34 379.12 -7.49 -41.84 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -6.39 Total: -3.33 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -1.21 Total: -10.41 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -1.31 Total: -24.12 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.34 -7.49 -41.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766809780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.824 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds