Wall clock time and date at job start Tue Mar 31 2020 12:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35991 * 117.00454 * 2 1 4 4 C 1.38572 * 120.07067 * 0.02562 * 3 2 1 5 5 C 1.38245 * 120.00028 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.14489 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.92604 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47557 * 89.99394 * 7 6 5 9 9 O 1.20823 * 119.99533 * 0.02562 * 8 7 6 10 10 O 1.34224 * 120.00237 * 180.02562 * 8 7 6 11 11 C 1.45196 * 117.00254 * 184.98950 * 10 8 7 12 12 C 1.50700 * 112.84773 * 296.91750 * 11 10 8 13 13 H 1.08000 * 120.00148 * 113.93538 * 12 11 10 14 14 C 1.37881 * 120.00105 * 294.21318 * 12 11 10 15 15 N 1.31517 * 119.99751 * 6.27873 * 14 12 11 16 16 Si 1.86793 * 120.00219 * 186.27853 * 14 12 11 17 17 H 1.48502 * 109.46974 * 59.99748 * 16 14 12 18 18 H 1.48498 * 109.47491 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47269 * 300.00239 * 16 14 12 20 20 C 1.53783 * 113.69361 * 68.18346 * 11 10 8 21 21 C 1.53780 * 87.08003 * 89.13018 * 20 11 10 22 22 C 1.53772 * 87.08195 * 25.43278 * 21 20 11 23 23 C 1.38242 * 120.14802 * 0.23108 * 6 5 4 24 24 C 1.38563 * 119.99953 * 359.49365 * 23 6 5 25 25 O 1.35991 * 120.07436 * 180.25244 * 24 23 6 26 26 C 1.42895 * 117.00082 * 0.28101 * 25 24 23 27 27 H 1.08996 * 109.47309 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46741 * 299.99929 * 1 2 3 29 29 H 1.08995 * 109.47374 * 59.99480 * 1 2 3 30 30 H 1.08000 * 120.00019 * 359.97438 * 4 3 2 31 31 H 1.07995 * 119.92470 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.46881 * 329.99060 * 7 6 5 33 33 H 1.09000 * 109.46965 * 209.99831 * 7 6 5 34 34 H 0.96996 * 119.99838 * 185.01388 * 15 14 12 35 35 H 1.08991 * 113.61686 * 203.67774 * 20 11 10 36 36 H 1.09004 * 113.61020 * 334.58552 * 20 11 10 37 37 H 1.09004 * 113.61349 * 270.88779 * 21 20 11 38 38 H 1.08996 * 113.69254 * 139.99414 * 21 20 11 39 39 H 1.09003 * 113.61909 * 220.02161 * 22 21 20 40 40 H 1.09000 * 113.69352 * 89.12730 * 22 21 20 41 41 H 1.07997 * 120.00127 * 179.75023 * 23 6 5 42 42 H 1.09005 * 109.46969 * 299.99548 * 26 25 24 43 43 H 1.08998 * 109.47703 * 59.99747 * 26 25 24 44 44 H 1.09010 * 109.47285 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6057 0.0011 6 6 3.3030 3.6798 0.0005 7 6 3.9838 5.0243 0.0005 8 6 4.2112 5.4723 1.4213 9 8 3.8572 4.7715 2.3397 10 8 4.8070 6.6498 1.6665 11 6 5.0943 6.9670 3.0540 12 6 3.8506 7.0850 3.8969 13 1 3.6623 6.3705 4.6846 14 6 2.9503 8.1017 3.6587 15 7 3.1117 8.8932 2.6209 16 14 1.5013 8.3550 4.8101 17 1 2.0009 8.6319 6.1809 18 1 0.6891 9.5050 4.3381 19 1 0.6625 7.1297 4.8271 20 6 6.1801 6.0756 3.6796 21 6 7.2048 7.1060 3.1766 22 6 6.0702 8.1426 3.2279 23 6 4.0603 2.5233 -0.0054 24 6 3.4360 1.2863 -0.0001 25 8 4.1796 0.1476 -0.0007 26 6 5.6003 0.3006 -0.0006 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.2147 2.3197 0.0005 31 1 1.3343 4.5115 0.0011 32 1 3.3538 5.7505 -0.5131 33 1 4.9417 4.9464 -0.5137 34 1 2.5215 9.6524 2.4935 35 1 6.1211 6.0131 4.7662 36 1 6.2721 5.0997 3.2028 37 1 7.5673 6.9050 2.1685 38 1 8.0098 7.3045 3.8842 39 1 6.0733 8.8355 2.3865 40 1 5.9801 8.6461 4.1904 41 1 5.1386 2.5839 -0.0098 42 1 5.9066 0.8508 -0.8904 43 1 5.9066 0.8499 0.8896 44 1 6.0716 -0.6824 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788145533.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:01 Heat of formation + Delta-G solvation = -106.229644 kcal Electronic energy + Delta-G solvation = -27538.419402 eV Core-core repulsion = 23616.029984 eV Total energy + Delta-G solvation = -3922.389418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.51687 -39.35971 -38.38339 -37.51445 -36.45097 -33.99913 -32.33951 -31.89269 -30.23285 -28.40655 -27.25158 -26.64964 -26.05412 -24.57333 -22.78236 -22.10891 -21.68222 -20.05062 -18.34472 -18.13240 -17.08524 -16.96527 -16.66840 -16.04424 -15.55843 -15.22181 -15.09583 -14.82601 -14.69002 -14.53056 -14.38751 -14.06807 -13.81415 -13.23772 -13.09774 -12.59667 -12.25878 -12.06024 -11.99422 -11.59409 -11.53382 -11.34337 -11.17399 -11.15173 -11.07642 -10.98237 -10.83197 -10.75033 -10.49287 -10.09424 -9.98139 -9.93138 -9.24903 -8.75265 -8.58516 -8.48021 -8.35730 -7.64407 -6.07260 -4.17136 1.40482 1.56322 3.29096 3.30014 3.32280 3.33641 3.38766 3.51396 3.69461 4.21327 4.39513 4.80548 4.87913 5.01035 5.10540 5.11592 5.18697 5.20351 5.25032 5.37202 5.41087 5.49558 5.53103 5.64016 5.65489 5.70534 5.78792 5.82889 5.97780 6.13152 6.26823 6.38697 6.41710 6.46049 6.75336 6.76831 6.78639 6.82523 7.08548 7.16696 7.24897 7.53385 7.64355 7.82687 7.94984 8.36936 8.85582 9.24685 9.52236 10.97590 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.004028 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.543920 B = 6949.377120 C = 8231.291686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.093 3.907 4 C -0.170 4.170 5 C -0.096 4.096 6 C -0.054 4.054 7 C -0.080 4.080 8 C 0.460 3.540 9 O -0.499 6.499 10 O -0.338 6.338 11 C 0.235 3.765 12 C -0.517 4.517 13 H 0.064 0.936 14 C 0.076 3.924 15 N -0.866 5.866 16 Si 0.889 3.111 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.152 4.152 21 C -0.152 4.152 22 C -0.096 4.096 23 C -0.156 4.156 24 C 0.097 3.903 25 O -0.310 6.310 26 C 0.026 3.974 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.261 0.739 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.057 -11.926 -8.597 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.048 3.952 4 C -0.189 4.189 5 C -0.115 4.115 6 C -0.055 4.055 7 C -0.117 4.117 8 C 0.301 3.699 9 O -0.387 6.387 10 O -0.254 6.254 11 C 0.201 3.799 12 C -0.554 4.554 13 H 0.082 0.918 14 C -0.129 4.129 15 N -0.503 5.503 16 Si 0.716 3.284 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.190 4.190 21 C -0.190 4.190 22 C -0.134 4.134 23 C -0.174 4.174 24 C 0.052 3.948 25 O -0.224 6.224 26 C -0.069 4.069 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.151 0.849 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.878 -12.369 -8.418 14.987 hybrid contribution -0.959 0.572 0.737 1.338 sum -0.081 -11.796 -7.681 14.077 Atomic orbital electron populations 1.23023 0.78940 1.03587 1.01260 1.86130 1.20727 1.26165 1.89365 1.18178 0.89062 0.85026 1.02978 1.20978 0.99735 0.91388 1.06753 1.20759 0.93836 0.97260 0.99602 1.19074 0.93324 0.93377 0.99684 1.20309 1.02556 0.94379 0.94501 1.22691 0.76115 0.80476 0.90579 1.90595 1.46872 1.54858 1.46340 1.86395 1.69757 1.34778 1.34505 1.20579 0.92473 0.91004 0.75811 1.21201 1.05390 1.12688 1.16135 0.91770 1.25039 0.97305 0.96108 0.94498 1.70058 1.38729 1.15559 1.25934 0.86712 0.82653 0.77702 0.81358 1.20000 1.21198 1.20085 1.23442 0.97634 0.97023 1.00887 1.22991 0.96771 0.99281 0.99914 1.22723 0.92925 0.96290 1.01430 1.20859 1.00091 0.90542 1.05944 1.18094 0.88120 0.85845 1.02738 1.86126 1.18500 1.28368 1.89356 1.23046 0.78897 1.03537 1.01429 0.88516 0.92704 0.92868 0.84888 0.85398 0.87496 0.88179 0.92880 0.90135 0.93279 0.91390 0.92928 0.91895 0.89971 0.84943 0.92820 0.92541 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.50 10.28 -34.21 -0.35 -4.85 16 3 C 0.09 1.45 6.70 -39.12 -0.26 1.19 16 4 C -0.17 -2.47 9.04 -39.46 -0.36 -2.83 16 5 C -0.10 -1.53 9.69 -39.57 -0.38 -1.91 16 6 C -0.05 -0.89 4.37 -104.61 -0.46 -1.35 16 7 C -0.08 -1.34 5.94 -29.03 -0.17 -1.51 16 8 C 0.46 10.40 7.34 36.01 0.26 10.66 16 9 O -0.50 -12.71 14.26 -18.75 -0.27 -12.98 16 10 O -0.34 -8.35 9.86 -39.24 -0.39 -8.73 16 11 C 0.24 5.89 0.33 -90.96 -0.03 5.86 16 12 C -0.52 -14.39 7.17 -34.44 -0.25 -14.64 16 13 H 0.06 1.86 7.82 -52.49 -0.41 1.45 16 14 C 0.08 2.08 5.36 -17.82 -0.10 1.99 16 15 N -0.87 -24.28 12.80 55.43 0.71 -23.57 16 16 Si 0.89 21.46 29.55 -169.99 -5.02 16.44 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C -0.15 -3.34 6.96 -25.92 -0.18 -3.52 16 21 C -0.15 -2.93 8.03 -25.92 -0.21 -3.14 16 22 C -0.10 -2.17 7.04 -25.92 -0.18 -2.35 16 23 C -0.16 -2.41 8.69 -39.46 -0.34 -2.75 16 24 C 0.10 1.55 6.70 -39.12 -0.26 1.29 16 25 O -0.31 -4.62 10.28 -34.21 -0.35 -4.97 16 26 C 0.03 0.28 9.81 101.05 0.99 1.27 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 29 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.13 1.56 6.30 -52.49 -0.33 1.23 16 31 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 32 H 0.11 1.67 8.08 -51.93 -0.42 1.25 16 33 H 0.10 1.38 8.08 -51.93 -0.42 0.96 16 34 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 35 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 36 H 0.05 1.07 7.55 -51.93 -0.39 0.67 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.08 1.86 8.09 -51.93 -0.42 1.44 16 41 H 0.13 1.78 6.30 -52.49 -0.33 1.45 16 42 H 0.05 0.48 7.65 -51.93 -0.40 0.09 16 43 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 44 H 0.10 0.78 8.14 -51.92 -0.42 0.35 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -33.66 369.40 -7.44 -41.10 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.41 Total: 2.49 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -0.93 Total: -10.49 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.71 Total: -23.57 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -1.36 Total: -31.53 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.66 -7.44 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788145533.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.129 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds